Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 110.28659 * 2 1 4 4 C 1.34781 * 119.99634 * 59.29873 * 3 2 1 5 5 O 1.21274 * 120.00344 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99423 * 179.97438 * 4 3 2 7 7 S 1.81001 * 109.46896 * 180.02562 * 6 4 3 8 8 C 1.76201 * 99.99894 * 180.02562 * 7 6 4 9 9 H 1.07991 * 120.00323 * 359.97438 * 8 7 6 10 10 C 1.38805 * 119.99766 * 179.97438 * 8 7 6 11 11 N 1.31633 * 120.00034 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99929 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46807 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.46906 * 300.00462 * 12 10 8 15 15 H 1.48498 * 109.47018 * 60.00200 * 12 10 8 16 16 C 1.54262 * 110.32325 * 122.12625 * 2 1 3 17 17 C 1.54608 * 104.94698 * 119.02266 * 16 2 1 18 18 N 1.48562 * 104.63657 * 23.78160 * 17 16 2 19 19 C 1.46897 * 111.00238 * 200.99386 * 18 17 16 20 20 C 1.50698 * 109.47032 * 285.41721 * 19 18 17 21 21 O 1.21277 * 120.00459 * 0.02562 * 20 19 18 22 22 N 1.34780 * 119.99909 * 179.97438 * 20 19 18 23 23 C 1.46499 * 119.99931 * 180.02562 * 22 20 19 24 24 C 1.53000 * 117.49886 * 223.62095 * 23 22 20 25 25 C 1.52997 * 60.00148 * 252.51107 * 24 23 22 26 26 C 1.48559 * 104.22257 * 320.55178 * 18 17 16 27 27 H 1.09004 * 109.47350 * 60.70009 * 1 2 3 28 28 H 1.08995 * 109.47327 * 180.69664 * 1 2 3 29 29 H 1.08998 * 109.47179 * 300.70320 * 1 2 3 30 30 H 0.96994 * 119.99836 * 239.29993 * 3 2 1 31 31 H 1.09001 * 109.47454 * 60.00304 * 6 4 3 32 32 H 1.09003 * 109.47322 * 299.99933 * 6 4 3 33 33 H 0.97001 * 119.99662 * 179.97438 * 11 10 8 34 34 H 1.08995 * 110.32654 * 237.89333 * 16 2 1 35 35 H 1.09001 * 110.32256 * 0.10407 * 16 2 1 36 36 H 1.08998 * 110.36326 * 265.00512 * 17 16 2 37 37 H 1.09004 * 110.52557 * 142.63588 * 17 16 2 38 38 H 1.09004 * 109.47181 * 45.41748 * 19 18 17 39 39 H 1.09003 * 109.46902 * 165.41655 * 19 18 17 40 40 H 0.96996 * 119.99834 * 0.02562 * 22 20 19 41 41 H 1.08999 * 115.55289 * 9.33092 * 23 22 20 42 42 H 1.09002 * 117.49852 * 0.02562 * 24 23 22 43 43 H 1.08998 * 117.50368 * 145.02175 * 24 23 22 44 44 H 1.09002 * 117.49968 * 252.50913 * 25 24 23 45 45 H 1.08998 * 117.50188 * 107.48746 * 25 24 23 46 46 H 1.09000 * 110.41390 * 280.70894 * 26 18 17 47 47 H 1.09001 * 110.41334 * 158.25942 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3742 0.0000 4 6 1.7126 2.2128 1.0037 5 8 0.9990 1.8301 1.9065 6 6 2.2356 3.6262 1.0039 7 16 1.6280 4.4940 2.4716 8 6 2.3693 6.0729 2.2221 9 1 2.9850 6.2491 1.3526 10 6 2.1620 7.0902 3.1434 11 7 1.4120 6.8753 4.2036 12 14 2.9485 8.7639 2.8794 13 1 2.5745 9.6682 3.9963 14 1 4.4253 8.6153 2.8351 15 1 2.4702 9.3387 1.5964 16 6 2.0658 -0.7693 1.2251 17 6 2.8839 -1.9405 0.6340 18 7 3.2708 -1.4802 -0.7245 19 6 3.6091 -2.6182 -1.5895 20 6 4.9599 -3.1611 -1.2000 21 8 5.5795 -2.6506 -0.2910 22 7 5.4789 -4.2146 -1.8612 23 6 6.7918 -4.7427 -1.4822 24 6 7.7633 -5.0967 -2.6099 25 6 7.0845 -6.2087 -1.8079 26 6 2.0662 -0.7699 -1.2260 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3634 -1.0275 0.0125 29 1 -0.3633 0.5247 0.8836 30 1 2.6084 1.6803 -0.7223 31 1 1.8903 4.1416 0.1077 32 1 3.3254 3.6103 1.0168 33 1 1.2674 7.5862 4.8475 34 1 2.7067 -0.1246 1.8264 35 1 1.2387 -1.1484 1.8254 36 1 2.2692 -2.8384 0.5704 37 1 3.7712 -2.1301 1.2381 38 1 2.8568 -3.3986 -1.4741 39 1 3.6354 -2.2896 -2.6285 40 1 4.9832 -4.6232 -2.5880 41 1 7.2139 -4.3375 -0.5625 42 1 7.4258 -4.9362 -3.6339 43 1 8.8249 -4.9243 -2.4325 44 1 7.6994 -6.7679 -1.1027 45 1 6.3001 -6.7803 -2.3041 46 1 1.3235 -1.4846 -1.5806 47 1 2.3377 -0.0760 -2.0216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484030037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = -31.513068 kcal Electronic energy + Delta-G solvation = -26935.855807 eV Core-core repulsion = 23053.020905 eV Total energy + Delta-G solvation = -3882.834902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58803 -39.81520 -38.17683 -37.28319 -34.50401 -33.27625 -32.37804 -31.84033 -29.91534 -28.44770 -28.00356 -25.44556 -25.11154 -22.91298 -22.66725 -21.60081 -21.07250 -20.85615 -19.28531 -17.84208 -17.53068 -17.01861 -16.57644 -16.19807 -15.74397 -15.47316 -15.06153 -14.77461 -14.75342 -14.69721 -14.15424 -13.96191 -13.64906 -13.20152 -13.14991 -13.01453 -12.85717 -12.63655 -12.45171 -12.17639 -12.09212 -11.97312 -11.82823 -11.69691 -11.29460 -11.05517 -11.02369 -10.99601 -10.96454 -10.78657 -10.71548 -10.13463 -9.76689 -9.20797 -9.15613 -9.01282 -8.85332 -8.70009 -8.17716 -6.43554 -6.16712 -3.86392 2.25360 2.51171 3.10166 3.19766 3.27332 3.31135 3.35800 3.41228 3.68402 3.79030 4.24463 4.25497 4.27113 4.28366 4.42654 4.47677 4.65011 4.74437 4.88246 4.97528 5.05281 5.09520 5.18299 5.18786 5.21532 5.30012 5.37202 5.43678 5.46380 5.54212 5.63910 5.74189 5.78476 5.85342 5.97535 6.01310 6.07392 6.22633 6.27732 6.32789 6.53248 6.54373 6.86336 7.07151 7.64439 7.86138 7.89862 8.40198 8.74158 9.28594 10.90638 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.001956 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.919753 B =14313.155813 C =15311.017276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.178 3.822 3 N -0.724 5.724 4 C 0.535 3.465 5 O -0.515 6.515 6 C -0.154 4.154 7 S -0.059 6.059 8 C -0.535 4.535 9 H 0.072 0.928 10 C 0.073 3.927 11 N -0.868 5.868 12 Si 0.918 3.082 13 H -0.283 1.283 14 H -0.274 1.274 15 H -0.274 1.274 16 C -0.122 4.122 17 C 0.034 3.966 18 N -0.489 5.489 19 C 0.026 3.974 20 C 0.517 3.483 21 O -0.510 6.510 22 N -0.709 5.709 23 C 0.082 3.918 24 C -0.194 4.194 25 C -0.191 4.191 26 C 0.032 3.968 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.399 0.601 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.268 0.732 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.400 0.600 41 H 0.138 0.862 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.060 0.940 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.632 -27.134 -18.137 33.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.091 3.909 3 N -0.379 5.379 4 C 0.322 3.678 5 O -0.390 6.390 6 C -0.305 4.305 7 S 0.167 5.833 8 C -0.683 4.683 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.504 5.504 12 Si 0.744 3.256 13 H -0.208 1.208 14 H -0.199 1.199 15 H -0.200 1.200 16 C -0.161 4.161 17 C -0.094 4.094 18 N -0.213 5.213 19 C -0.106 4.106 20 C 0.303 3.697 21 O -0.383 6.383 22 N -0.361 5.361 23 C -0.024 4.024 24 C -0.233 4.233 25 C -0.229 4.229 26 C -0.096 4.096 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.233 0.767 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.234 0.766 41 H 0.156 0.844 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.115 0.885 46 H 0.078 0.922 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.270 -26.947 -15.758 31.658 hybrid contribution 0.789 0.786 -2.178 2.446 sum 6.059 -26.161 -17.936 32.292 Atomic orbital electron populations 1.22236 0.93544 1.01989 1.04138 1.20840 0.93774 0.82134 0.94160 1.46108 1.53612 1.11216 1.26930 1.20216 0.79866 0.86646 0.81113 1.90654 1.36071 1.76997 1.35250 1.23543 1.04383 0.95197 1.07330 1.85336 1.66121 1.08435 1.23369 1.22841 1.36193 0.97326 1.11981 0.91023 1.24984 0.95128 0.98987 0.94478 1.70012 1.36034 1.33563 1.10755 0.86236 0.79543 0.81888 0.77908 1.20844 1.19939 1.19985 1.22746 0.99753 0.96363 0.97230 1.23306 0.99560 0.96330 0.90176 1.65182 1.33024 1.21067 1.02042 1.22135 0.94358 0.94486 0.99640 1.20554 0.87728 0.79201 0.82223 1.90742 1.61215 1.57442 1.28867 1.45387 1.19384 1.33519 1.37833 1.21584 0.85092 0.95905 0.99827 1.23426 0.99284 1.03216 0.97344 1.23379 1.03733 0.91745 1.04035 1.23438 0.91213 0.97695 0.97270 0.92539 0.92268 0.89393 0.76701 0.89408 0.89284 0.92192 0.89858 0.90310 0.94109 0.88950 0.91447 0.87719 0.76625 0.84419 0.88510 0.87938 0.87845 0.88520 0.92196 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.15 37.16 0.30 -1.62 16 2 C 0.18 2.15 1.01 -130.43 -0.13 2.01 16 3 N -0.72 -10.12 5.09 -46.32 -0.24 -10.36 16 4 C 0.54 10.05 7.03 -10.98 -0.08 9.97 16 5 O -0.52 -11.33 13.15 5.56 0.07 -11.25 16 6 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 7 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 8 C -0.54 -15.52 9.50 30.94 0.29 -15.22 16 9 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 10 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 11 N -0.87 -26.52 13.22 55.49 0.73 -25.79 16 12 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 C -0.12 -1.61 5.55 -25.23 -0.14 -1.75 16 17 C 0.03 0.38 5.93 -2.06 -0.01 0.37 16 18 N -0.49 -4.97 4.98 -231.26 -1.15 -6.12 16 19 C 0.03 0.18 5.32 -4.98 -0.03 0.15 16 20 C 0.52 4.79 7.68 -10.98 -0.08 4.71 16 21 O -0.51 -7.17 14.79 5.56 0.08 -7.08 16 22 N -0.71 -4.39 5.57 -53.81 -0.30 -4.69 16 23 C 0.08 0.54 6.43 -67.93 -0.44 0.11 16 24 C -0.19 -0.95 10.46 -26.73 -0.28 -1.22 16 25 C -0.19 -0.84 10.45 -26.73 -0.28 -1.12 16 26 C 0.03 0.28 5.65 -2.18 -0.01 0.27 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.36 6.17 -51.93 -0.32 1.04 16 30 H 0.40 4.67 8.27 -40.82 -0.34 4.33 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 33 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.08 1.36 7.40 -51.93 -0.38 0.98 16 35 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 36 H 0.04 0.38 7.75 -51.93 -0.40 -0.02 16 37 H 0.09 1.22 7.23 -51.93 -0.38 0.84 16 38 H 0.07 0.34 7.77 -51.93 -0.40 -0.06 16 39 H 0.10 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.40 1.23 8.83 -40.82 -0.36 0.87 16 41 H 0.14 1.18 7.40 -51.93 -0.38 0.80 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.42 7.72 -51.93 -0.40 0.02 16 47 H 0.09 0.70 7.76 -51.93 -0.40 0.30 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -36.92 396.38 -10.33 -47.26 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.52 Total: 3.43 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.76 Total: -4.27 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.95 Total: -46.96 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.16 Total: -18.34 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.92 -10.33 -47.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484030037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.743 kcal (2) G-P(sol) polarization free energy of solvation -36.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds