Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 110.28659 * 2 1 4 4 C 1.34781 * 119.99634 * 59.29873 * 3 2 1 5 5 O 1.21274 * 120.00344 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99423 * 179.97438 * 4 3 2 7 7 S 1.81001 * 109.46896 * 180.02562 * 6 4 3 8 8 C 1.76201 * 99.99894 * 180.02562 * 7 6 4 9 9 H 1.07991 * 120.00323 * 359.97438 * 8 7 6 10 10 C 1.38805 * 119.99766 * 179.97438 * 8 7 6 11 11 N 1.31633 * 120.00034 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99929 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46807 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.46906 * 300.00462 * 12 10 8 15 15 H 1.48498 * 109.47018 * 60.00200 * 12 10 8 16 16 C 1.54262 * 110.32325 * 122.12625 * 2 1 3 17 17 C 1.54608 * 104.94698 * 119.02266 * 16 2 1 18 18 N 1.48562 * 104.63657 * 23.78160 * 17 16 2 19 19 C 1.46897 * 111.00238 * 200.99386 * 18 17 16 20 20 C 1.50698 * 109.47032 * 285.41721 * 19 18 17 21 21 O 1.21277 * 120.00459 * 0.02562 * 20 19 18 22 22 N 1.34780 * 119.99909 * 179.97438 * 20 19 18 23 23 C 1.46499 * 119.99931 * 180.02562 * 22 20 19 24 24 C 1.53000 * 117.49886 * 223.62095 * 23 22 20 25 25 C 1.52997 * 60.00148 * 252.51107 * 24 23 22 26 26 C 1.48559 * 104.22257 * 320.55178 * 18 17 16 27 27 H 1.09004 * 109.47350 * 60.70009 * 1 2 3 28 28 H 1.08995 * 109.47327 * 180.69664 * 1 2 3 29 29 H 1.08998 * 109.47179 * 300.70320 * 1 2 3 30 30 H 0.96994 * 119.99836 * 239.29993 * 3 2 1 31 31 H 1.09001 * 109.47454 * 60.00304 * 6 4 3 32 32 H 1.09003 * 109.47322 * 299.99933 * 6 4 3 33 33 H 0.97001 * 119.99662 * 179.97438 * 11 10 8 34 34 H 1.08995 * 110.32654 * 237.89333 * 16 2 1 35 35 H 1.09001 * 110.32256 * 0.10407 * 16 2 1 36 36 H 1.08998 * 110.36326 * 265.00512 * 17 16 2 37 37 H 1.09004 * 110.52557 * 142.63588 * 17 16 2 38 38 H 1.09004 * 109.47181 * 45.41748 * 19 18 17 39 39 H 1.09003 * 109.46902 * 165.41655 * 19 18 17 40 40 H 0.96996 * 119.99834 * 0.02562 * 22 20 19 41 41 H 1.08999 * 115.55289 * 9.33092 * 23 22 20 42 42 H 1.09002 * 117.49852 * 0.02562 * 24 23 22 43 43 H 1.08998 * 117.50368 * 145.02175 * 24 23 22 44 44 H 1.09002 * 117.49968 * 252.50913 * 25 24 23 45 45 H 1.08998 * 117.50188 * 107.48746 * 25 24 23 46 46 H 1.09000 * 110.41390 * 280.70894 * 26 18 17 47 47 H 1.09001 * 110.41334 * 158.25942 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3742 0.0000 4 6 1.7126 2.2128 1.0037 5 8 0.9990 1.8301 1.9065 6 6 2.2356 3.6262 1.0039 7 16 1.6280 4.4940 2.4716 8 6 2.3693 6.0729 2.2221 9 1 2.9850 6.2491 1.3526 10 6 2.1620 7.0902 3.1434 11 7 1.4120 6.8753 4.2036 12 14 2.9485 8.7639 2.8794 13 1 2.5745 9.6682 3.9963 14 1 4.4253 8.6153 2.8351 15 1 2.4702 9.3387 1.5964 16 6 2.0658 -0.7693 1.2251 17 6 2.8839 -1.9405 0.6340 18 7 3.2708 -1.4802 -0.7245 19 6 3.6091 -2.6182 -1.5895 20 6 4.9599 -3.1611 -1.2000 21 8 5.5795 -2.6506 -0.2910 22 7 5.4789 -4.2146 -1.8612 23 6 6.7918 -4.7427 -1.4822 24 6 7.7633 -5.0967 -2.6099 25 6 7.0845 -6.2087 -1.8079 26 6 2.0662 -0.7699 -1.2260 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3634 -1.0275 0.0125 29 1 -0.3633 0.5247 0.8836 30 1 2.6084 1.6803 -0.7223 31 1 1.8903 4.1416 0.1077 32 1 3.3254 3.6103 1.0168 33 1 1.2674 7.5862 4.8475 34 1 2.7067 -0.1246 1.8264 35 1 1.2387 -1.1484 1.8254 36 1 2.2692 -2.8384 0.5704 37 1 3.7712 -2.1301 1.2381 38 1 2.8568 -3.3986 -1.4741 39 1 3.6354 -2.2896 -2.6285 40 1 4.9832 -4.6232 -2.5880 41 1 7.2139 -4.3375 -0.5625 42 1 7.4258 -4.9362 -3.6339 43 1 8.8249 -4.9243 -2.4325 44 1 7.6994 -6.7679 -1.1027 45 1 6.3001 -6.7803 -2.3041 46 1 1.3235 -1.4846 -1.5806 47 1 2.3377 -0.0760 -2.0216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484030037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = -60.996936 kcal Electronic energy + Delta-G solvation = -26937.134323 eV Core-core repulsion = 23053.020905 eV Total energy + Delta-G solvation = -3884.113419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51704 -40.71144 -39.22752 -37.92255 -35.59263 -34.58171 -33.90966 -32.99811 -30.94807 -29.85121 -28.72740 -27.65144 -25.96863 -23.34409 -23.26488 -22.47044 -22.13407 -21.51631 -20.47846 -19.80924 -18.24850 -17.77155 -17.60826 -17.45695 -16.87761 -16.44676 -16.41361 -16.20259 -16.03639 -15.57712 -15.29618 -14.81955 -14.75214 -14.60992 -14.29965 -14.10056 -13.82387 -13.63778 -13.40537 -13.16438 -13.15273 -12.98667 -12.87155 -12.82666 -12.59613 -12.47601 -12.33258 -12.19351 -11.96988 -11.81737 -11.73253 -11.47077 -11.12861 -10.88485 -10.65326 -10.27237 -10.04814 -9.72806 -9.43540 -8.65169 -8.34341 -6.11855 1.27524 1.43404 1.46653 1.57221 1.62551 1.69309 1.99196 2.27023 2.34919 2.99313 2.99354 3.01251 3.32138 3.42464 3.63623 3.81003 3.88825 4.00092 4.03350 4.06327 4.08103 4.19004 4.29687 4.32898 4.35391 4.45014 4.51764 4.63031 4.66607 4.76652 4.76854 4.80619 4.84776 4.87329 5.02832 5.07223 5.20101 5.20787 5.34502 5.41439 5.54830 5.63290 5.79968 5.88189 6.19685 6.59620 6.61266 7.06629 7.33207 7.34256 8.74604 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.001956 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.919753 B =14313.155813 C =15311.017276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 N -0.703 5.703 4 C 0.536 3.464 5 O -0.554 6.554 6 C -0.131 4.131 7 S -0.146 6.146 8 C -0.549 4.549 9 H 0.080 0.920 10 C 0.013 3.987 11 N -0.911 5.911 12 Si 0.998 3.002 13 H -0.277 1.277 14 H -0.264 1.264 15 H -0.261 1.261 16 C -0.123 4.123 17 C 0.046 3.954 18 N -0.513 5.513 19 C 0.029 3.971 20 C 0.511 3.489 21 O -0.571 6.571 22 N -0.692 5.692 23 C 0.052 3.948 24 C -0.186 4.186 25 C -0.172 4.172 26 C 0.044 3.956 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.413 0.587 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.271 0.729 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.418 0.582 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.933 -28.501 -22.169 36.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.085 3.915 3 N -0.357 5.357 4 C 0.322 3.678 5 O -0.431 6.431 6 C -0.283 4.283 7 S 0.081 5.919 8 C -0.697 4.697 9 H 0.099 0.901 10 C -0.191 4.191 11 N -0.547 5.547 12 Si 0.819 3.181 13 H -0.202 1.202 14 H -0.189 1.189 15 H -0.185 1.185 16 C -0.162 4.162 17 C -0.082 4.082 18 N -0.238 5.238 19 C -0.102 4.102 20 C 0.298 3.702 21 O -0.449 6.449 22 N -0.344 5.344 23 C -0.054 4.054 24 C -0.225 4.225 25 C -0.210 4.210 26 C -0.083 4.083 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.250 0.750 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.154 0.846 40 H 0.255 0.745 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.112 0.888 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.581 -28.379 -19.881 35.097 hybrid contribution 0.744 1.047 -0.976 1.613 sum 6.325 -27.332 -20.857 34.958 Atomic orbital electron populations 1.22166 0.93144 1.03332 1.02714 1.21113 0.94117 0.80767 0.95524 1.45931 1.52599 1.11568 1.25587 1.19908 0.79702 0.86407 0.81802 1.90652 1.37990 1.77476 1.37019 1.23393 1.04706 0.95980 1.04174 1.85485 1.67546 1.10154 1.28691 1.23184 1.36369 0.97625 1.12496 0.90139 1.26129 0.95486 1.03622 0.93905 1.70179 1.37573 1.35090 1.11870 0.85013 0.78694 0.75990 0.78353 1.20238 1.18859 1.18541 1.22667 0.99166 0.96862 0.97510 1.23080 0.98151 0.96152 0.90784 1.65075 1.33878 1.22950 1.01872 1.22250 0.93338 0.94333 1.00272 1.21109 0.88400 0.79220 0.81479 1.90730 1.62957 1.59538 1.31633 1.45227 1.19106 1.32501 1.37575 1.21534 0.85978 0.98028 0.99889 1.23481 0.98910 1.02784 0.97288 1.23447 1.03640 0.90542 1.03399 1.23428 0.91385 0.98046 0.95451 0.91176 0.89508 0.93559 0.75043 0.87373 0.88207 0.91991 0.94130 0.90779 0.91609 0.91949 0.88363 0.84562 0.74463 0.87451 0.87257 0.88013 0.87532 0.86758 0.88800 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.15 71.98 0.59 -2.87 16 2 C 0.17 3.86 1.01 4.50 0.00 3.86 16 3 N -0.70 -19.01 5.09 -418.86 -2.13 -21.14 16 4 C 0.54 20.50 7.03 87.66 0.62 21.12 16 5 O -0.55 -25.56 13.15 -3.01 -0.04 -25.60 16 6 C -0.13 -5.49 6.16 71.24 0.44 -5.05 16 7 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 8 C -0.55 -32.30 9.50 67.96 0.65 -31.65 16 9 H 0.08 4.42 7.80 -2.92 -0.02 4.39 16 10 C 0.01 0.78 5.49 84.86 0.47 1.25 16 11 N -0.91 -57.08 13.22 21.65 0.29 -56.79 16 12 Si 1.00 44.70 29.55 68.60 2.03 46.73 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 16 C -0.12 -3.31 5.55 31.57 0.18 -3.14 16 17 C 0.05 1.00 5.93 86.53 0.51 1.51 16 18 N -0.51 -9.16 4.98 -885.56 -4.41 -13.56 16 19 C 0.03 0.30 5.32 85.56 0.46 0.75 16 20 C 0.51 8.76 7.68 87.66 0.67 9.43 16 21 O -0.57 -16.55 14.79 -3.02 -0.04 -16.59 16 22 N -0.69 -7.22 5.57 -442.53 -2.46 -9.69 16 23 C 0.05 0.66 6.43 44.99 0.29 0.94 16 24 C -0.19 -1.50 10.46 30.59 0.32 -1.18 16 25 C -0.17 -1.17 10.45 30.59 0.32 -0.85 16 26 C 0.04 0.61 5.65 86.45 0.49 1.09 16 27 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.45 6.17 -2.39 -0.01 1.44 16 30 H 0.41 8.80 8.27 -92.71 -0.77 8.03 16 31 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 32 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 33 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 34 H 0.04 1.42 7.40 -2.39 -0.02 1.41 16 35 H 0.07 2.00 7.71 -2.39 -0.02 1.98 16 36 H 0.07 1.07 7.75 -2.39 -0.02 1.05 16 37 H 0.06 1.74 7.23 -2.38 -0.02 1.72 16 38 H 0.10 0.47 7.77 -2.39 -0.02 0.45 16 39 H 0.14 0.59 8.08 -2.39 -0.02 0.57 16 40 H 0.42 1.15 8.83 -92.71 -0.82 0.33 16 41 H 0.11 2.02 7.40 -2.39 -0.02 2.01 16 42 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.09 0.73 7.72 -2.39 -0.02 0.71 16 47 H 0.11 1.15 7.76 -2.39 -0.02 1.13 16 Total: -1.00 -87.28 396.38 -2.54 -89.82 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.59 Total: 21.09 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.99 Total: -4.76 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -8.72 Total: -101.19 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.08 Total: -42.19 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -87.28 -2.54 -89.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484030037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.820 kcal (2) G-P(sol) polarization free energy of solvation -87.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds