Wall clock time and date at job start Sat Apr 11 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34473 * 126.16487 * 2 1 4 4 C 1.30257 * 108.70227 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.62056 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46772 * 89.99914 * 5 4 3 7 7 C 1.46899 * 110.99513 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47400 * 35.00135 * 7 6 5 9 9 C 1.53006 * 109.47295 * 275.00016 * 7 6 5 10 10 C 1.53009 * 109.47045 * 155.00441 * 7 6 5 11 11 C 1.53001 * 109.46390 * 295.00001 * 10 7 6 12 12 N 1.46509 * 109.46769 * 180.02562 * 11 10 7 13 13 C 1.34768 * 120.00006 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00205 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99890 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47363 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00031 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99871 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99451 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99315 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00222 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46853 * 89.99797 * 21 19 17 23 23 H 1.48497 * 109.46797 * 209.99609 * 21 19 17 24 24 H 1.48499 * 109.47194 * 330.00063 * 21 19 17 25 25 O 1.33965 * 108.75920 * 359.97438 * 4 3 2 26 26 C 1.34326 * 126.16334 * 179.68365 * 2 1 3 27 27 C 1.50694 * 126.44554 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.46953 * 90.02759 * 1 2 3 29 29 H 1.09000 * 109.47318 * 210.02356 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.02987 * 1 2 3 31 31 H 1.08999 * 109.47031 * 209.99938 * 5 4 3 32 32 H 1.08998 * 109.46952 * 330.00286 * 5 4 3 33 33 H 1.00898 * 111.00075 * 303.95663 * 6 5 4 34 34 H 1.08995 * 109.46919 * 60.00376 * 9 7 6 35 35 H 1.08993 * 109.47109 * 180.02562 * 9 7 6 36 36 H 1.09000 * 109.46994 * 300.00367 * 9 7 6 37 37 H 1.09004 * 109.46913 * 54.99782 * 10 7 6 38 38 H 1.08997 * 109.46760 * 174.99835 * 10 7 6 39 39 H 1.09004 * 109.46969 * 299.99179 * 11 10 7 40 40 H 1.08997 * 109.47773 * 59.99918 * 11 10 7 41 41 H 0.97007 * 119.99260 * 359.97438 * 12 11 10 42 42 H 1.09004 * 109.46776 * 300.00041 * 15 13 12 43 43 H 1.08997 * 109.47103 * 59.99684 * 15 13 12 44 44 H 0.96999 * 119.99582 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.47018 * 90.00120 * 27 26 2 46 46 H 1.08997 * 109.47255 * 209.99722 * 27 26 2 47 47 H 1.08999 * 109.47287 * 330.00359 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7480 1.5999 0.0002 6 7 5.1391 1.8950 1.3851 7 6 6.3128 2.7776 1.4239 8 1 6.2669 3.4800 0.5917 9 6 7.5867 1.9374 1.3125 10 6 6.3259 3.5510 2.7441 11 6 5.1151 4.4847 2.7999 12 7 5.1279 5.2258 4.0637 13 6 4.1509 6.1138 4.3341 14 8 3.2613 6.2999 3.5310 15 6 4.1638 6.8757 5.6343 16 16 2.7324 7.9816 5.6998 17 6 2.9910 8.7235 7.2769 18 1 3.8456 8.4403 7.8733 19 6 2.0967 9.6727 7.7523 20 7 2.2901 10.2273 8.9303 21 14 0.6188 10.1629 6.7204 22 1 -0.5288 9.2793 7.0482 23 1 0.2570 11.5732 7.0126 24 1 0.9533 10.0259 5.2801 25 8 3.5735 -0.6446 0.0015 26 6 2.2997 -1.0844 0.0060 27 6 1.8493 -2.5225 0.0145 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 5.5732 1.1063 -0.5131 32 1 4.5040 2.5294 -0.5143 33 1 4.3694 2.2944 1.9009 34 1 7.5774 1.3864 0.3721 35 1 8.4575 2.5922 1.3418 36 1 7.6325 1.2349 2.1447 37 1 6.2821 2.8490 3.5769 38 1 7.2414 4.1385 2.8118 39 1 5.1590 5.1867 1.9672 40 1 4.1996 3.8972 2.7321 41 1 5.8397 5.0772 4.7058 42 1 4.1195 6.1738 6.4671 43 1 5.0796 7.4628 5.7023 44 1 1.6650 10.8904 9.2627 45 1 1.7403 -2.8752 -1.0112 46 1 2.5902 -3.1322 0.5315 47 1 0.8916 -2.6002 0.5290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491986108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:58 Heat of formation + Delta-G solvation = -29.852475 kcal Electronic energy + Delta-G solvation = -26145.290126 eV Core-core repulsion = 22262.527233 eV Total energy + Delta-G solvation = -3882.762894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.62808 -39.42421 -38.12807 -35.46427 -34.98888 -33.68530 -32.42983 -31.96237 -30.21836 -29.49554 -28.26516 -27.45888 -25.60826 -24.55522 -23.29329 -21.93053 -21.05604 -20.93238 -20.28586 -17.86774 -17.23442 -17.17408 -16.43098 -16.34848 -16.10150 -15.63153 -15.26192 -15.06455 -14.93943 -14.37545 -13.99567 -13.92520 -13.79784 -13.67340 -13.49367 -13.43510 -13.23254 -12.94848 -12.78642 -12.70800 -12.64831 -12.35447 -12.24776 -12.05885 -11.57368 -11.53128 -11.26900 -11.20732 -11.18406 -10.99726 -10.76278 -10.58967 -9.84844 -9.52509 -9.11886 -9.00136 -8.93879 -8.80351 -8.48961 -6.90849 -6.28160 -3.99746 1.08784 2.26411 2.35631 2.76740 2.98085 3.30285 3.34946 3.50227 3.51803 3.65232 3.86565 4.34033 4.34993 4.42998 4.47240 4.50483 4.63884 4.73918 4.77807 4.83278 4.92003 4.94084 5.04906 5.10912 5.13438 5.15202 5.26962 5.28219 5.36469 5.38108 5.40762 5.44039 5.54931 5.67501 5.70650 5.77910 5.78831 5.82737 5.90757 6.01937 6.04951 6.44331 6.50532 6.82264 7.46859 7.60063 7.94970 8.42374 8.49273 9.18077 10.81026 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.002000 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.762529 B =13995.566317 C =15791.017560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.015 4.015 3 N -0.471 5.471 4 C 0.194 3.806 5 C 0.156 3.844 6 N -0.685 5.685 7 C 0.089 3.911 8 H 0.054 0.946 9 C -0.141 4.141 10 C -0.135 4.135 11 C 0.117 3.883 12 N -0.736 5.736 13 C 0.529 3.471 14 O -0.518 6.518 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 O -0.193 6.193 26 C -0.051 4.051 27 C -0.066 4.066 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.354 0.646 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 -25.747 -19.808 33.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.135 4.135 3 N -0.201 5.201 4 C -0.013 4.013 5 C 0.027 3.973 6 N -0.321 5.321 7 C -0.020 4.020 8 H 0.072 0.928 9 C -0.199 4.199 10 C -0.173 4.173 11 C -0.008 4.008 12 N -0.391 5.391 13 C 0.315 3.685 14 O -0.393 6.393 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 O -0.080 6.080 26 C -0.105 4.105 27 C -0.123 4.123 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.175 0.825 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.345 -25.268 -20.948 33.429 hybrid contribution 0.526 0.212 0.872 1.040 sum 6.871 -25.056 -20.075 32.833 Atomic orbital electron populations 1.20135 0.86428 1.03536 1.02824 1.21548 0.98033 0.87614 1.06289 1.70377 1.00501 1.31555 1.17678 1.25907 0.94992 0.79207 1.01224 1.20245 0.90134 0.94951 0.92017 1.60595 1.09688 1.50173 1.11629 1.21475 0.90913 0.92579 0.97061 0.92753 1.21810 0.95525 1.00033 1.02516 1.22013 0.98709 0.98313 0.98289 1.21327 0.98136 0.94240 0.87048 1.45917 1.28960 1.43333 1.20859 1.20303 0.81042 0.78928 0.88218 1.90710 1.35381 1.64450 1.48738 1.23278 1.05323 1.01883 0.96974 1.84805 1.31095 1.48536 1.27132 1.22320 1.15477 1.27534 1.01559 0.89383 1.24721 0.97544 0.94480 0.94609 1.69943 1.37131 1.27151 1.17460 0.86729 0.83252 0.78651 0.83197 1.19201 1.19943 1.15919 1.84382 1.29971 1.23960 1.69677 1.23206 0.80872 0.98280 1.08112 1.20266 1.02014 0.86375 1.03649 0.90738 0.90741 0.90339 0.88067 0.90405 0.82505 0.92606 0.92086 0.91681 0.89983 0.89921 0.91626 0.91829 0.76576 0.88484 0.88452 0.91954 0.89876 0.90304 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.22 36.01 0.37 -0.19 16 2 C -0.01 -0.16 7.11 -82.81 -0.59 -0.75 16 3 N -0.47 -6.00 11.29 -7.36 -0.08 -6.08 16 4 C 0.19 2.14 7.86 -12.95 -0.10 2.04 16 5 C 0.16 1.27 6.11 -4.97 -0.03 1.23 16 6 N -0.68 -5.72 6.30 -107.98 -0.68 -6.40 16 7 C 0.09 0.60 2.65 -67.71 -0.18 0.42 16 8 H 0.05 0.35 7.80 -51.93 -0.40 -0.05 16 9 C -0.14 -0.81 9.42 37.16 0.35 -0.46 16 10 C -0.14 -0.96 4.92 -26.73 -0.13 -1.09 16 11 C 0.12 1.25 5.50 -4.04 -0.02 1.23 16 12 N -0.74 -9.19 5.56 -60.29 -0.33 -9.53 16 13 C 0.53 9.48 7.85 -10.99 -0.09 9.40 16 14 O -0.52 -11.41 15.86 5.55 0.09 -11.32 16 15 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 16 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 17 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 21 Si 0.86 22.00 27.74 -169.99 -4.72 17.29 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 25 O -0.19 -2.13 10.78 5.35 0.06 -2.08 16 26 C -0.05 -0.49 7.39 -35.69 -0.26 -0.76 16 27 C -0.07 -0.34 10.22 36.00 0.37 0.03 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.40 7.16 -51.93 -0.37 0.03 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.64 7.44 -51.93 -0.39 0.25 16 32 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 33 H 0.35 3.47 6.46 -39.29 -0.25 3.21 16 34 H 0.05 0.30 7.45 -51.93 -0.39 -0.08 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 41 H 0.40 3.78 8.47 -40.82 -0.35 3.44 16 42 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 43 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.08 0.31 8.14 -51.92 -0.42 -0.12 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.32 7.16 -51.93 -0.37 -0.05 16 LS Contribution 404.24 15.07 6.09 6.09 Total: -1.00 -36.92 404.24 -8.18 -45.09 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.50 Total: 1.70 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 0.12 Total: -3.20 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.32 Total: -47.93 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.15 Total: -13.40 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.92 -8.18 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491986108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.239 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds