Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34473 * 126.16487 * 2 1 4 4 C 1.30257 * 108.70227 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.62056 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46772 * 89.99914 * 5 4 3 7 7 C 1.46899 * 110.99513 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47400 * 35.00135 * 7 6 5 9 9 C 1.53006 * 109.47295 * 275.00016 * 7 6 5 10 10 C 1.53009 * 109.47045 * 155.00441 * 7 6 5 11 11 C 1.53001 * 109.46390 * 295.00001 * 10 7 6 12 12 N 1.46509 * 109.46769 * 180.02562 * 11 10 7 13 13 C 1.34768 * 120.00006 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00205 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99890 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47363 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00031 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99871 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99451 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99315 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00222 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46853 * 89.99797 * 21 19 17 23 23 H 1.48497 * 109.46797 * 209.99609 * 21 19 17 24 24 H 1.48499 * 109.47194 * 330.00063 * 21 19 17 25 25 O 1.33965 * 108.75920 * 359.97438 * 4 3 2 26 26 C 1.34326 * 126.16334 * 179.68365 * 2 1 3 27 27 C 1.50694 * 126.44554 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.46953 * 90.02759 * 1 2 3 29 29 H 1.09000 * 109.47318 * 210.02356 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.02987 * 1 2 3 31 31 H 1.08999 * 109.47031 * 209.99938 * 5 4 3 32 32 H 1.08998 * 109.46952 * 330.00286 * 5 4 3 33 33 H 1.00898 * 111.00075 * 303.95663 * 6 5 4 34 34 H 1.08995 * 109.46919 * 60.00376 * 9 7 6 35 35 H 1.08993 * 109.47109 * 180.02562 * 9 7 6 36 36 H 1.09000 * 109.46994 * 300.00367 * 9 7 6 37 37 H 1.09004 * 109.46913 * 54.99782 * 10 7 6 38 38 H 1.08997 * 109.46760 * 174.99835 * 10 7 6 39 39 H 1.09004 * 109.46969 * 299.99179 * 11 10 7 40 40 H 1.08997 * 109.47773 * 59.99918 * 11 10 7 41 41 H 0.97007 * 119.99260 * 359.97438 * 12 11 10 42 42 H 1.09004 * 109.46776 * 300.00041 * 15 13 12 43 43 H 1.08997 * 109.47103 * 59.99684 * 15 13 12 44 44 H 0.96999 * 119.99582 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.47018 * 90.00120 * 27 26 2 46 46 H 1.08997 * 109.47255 * 209.99722 * 27 26 2 47 47 H 1.08999 * 109.47287 * 330.00359 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7480 1.5999 0.0002 6 7 5.1391 1.8950 1.3851 7 6 6.3128 2.7776 1.4239 8 1 6.2669 3.4800 0.5917 9 6 7.5867 1.9374 1.3125 10 6 6.3259 3.5510 2.7441 11 6 5.1151 4.4847 2.7999 12 7 5.1279 5.2258 4.0637 13 6 4.1509 6.1138 4.3341 14 8 3.2613 6.2999 3.5310 15 6 4.1638 6.8757 5.6343 16 16 2.7324 7.9816 5.6998 17 6 2.9910 8.7235 7.2769 18 1 3.8456 8.4403 7.8733 19 6 2.0967 9.6727 7.7523 20 7 2.2901 10.2273 8.9303 21 14 0.6188 10.1629 6.7204 22 1 -0.5288 9.2793 7.0482 23 1 0.2570 11.5732 7.0126 24 1 0.9533 10.0259 5.2801 25 8 3.5735 -0.6446 0.0015 26 6 2.2997 -1.0844 0.0060 27 6 1.8493 -2.5225 0.0145 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 5.5732 1.1063 -0.5131 32 1 4.5040 2.5294 -0.5143 33 1 4.3694 2.2944 1.9009 34 1 7.5774 1.3864 0.3721 35 1 8.4575 2.5922 1.3418 36 1 7.6325 1.2349 2.1447 37 1 6.2821 2.8490 3.5769 38 1 7.2414 4.1385 2.8118 39 1 5.1590 5.1867 1.9672 40 1 4.1996 3.8972 2.7321 41 1 5.8397 5.0772 4.7058 42 1 4.1195 6.1738 6.4671 43 1 5.0796 7.4628 5.7023 44 1 1.6650 10.8904 9.2627 45 1 1.7403 -2.8752 -1.0112 46 1 2.5902 -3.1322 0.5315 47 1 0.8916 -2.6002 0.5290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491986108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = -59.490572 kcal Electronic energy + Delta-G solvation = -26146.575331 eV Core-core repulsion = 22262.527233 eV Total energy + Delta-G solvation = -3884.048098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.38273 -40.72657 -38.87175 -36.23685 -36.03475 -34.68078 -34.43652 -32.71872 -31.38767 -30.06847 -29.24413 -28.11662 -27.84470 -25.20083 -24.10932 -22.69587 -22.01841 -21.67400 -21.26035 -19.88293 -18.05738 -17.97956 -17.67998 -17.39303 -17.08587 -17.00737 -16.58059 -16.28043 -15.81262 -15.63179 -15.05438 -14.94459 -14.87796 -14.73492 -14.46059 -14.25382 -14.02525 -13.83675 -13.63338 -13.54365 -13.35814 -13.25526 -13.15700 -13.02850 -12.96002 -12.71808 -12.61359 -12.31113 -12.20963 -11.97957 -11.88817 -11.78588 -11.55566 -11.18109 -11.01792 -10.54484 -10.18691 -9.68255 -9.48248 -9.00954 -8.52471 -6.23305 0.35706 0.97873 1.30397 1.45927 1.51986 1.54186 1.54966 1.66085 2.20431 2.25379 2.71008 2.85626 2.86007 3.22147 3.72675 3.75468 3.79652 3.85001 3.97339 4.07927 4.14376 4.22333 4.23172 4.37714 4.45546 4.46627 4.52731 4.59089 4.60187 4.64146 4.72847 4.84574 4.94883 4.95599 4.98807 5.01930 5.05254 5.15043 5.16072 5.38679 5.39399 5.45879 5.70036 5.86684 6.10602 6.11811 6.45298 6.70598 6.92756 7.17851 8.59809 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.002000 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.762529 B =13995.566317 C =15791.017560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.046 4.046 3 N -0.508 5.508 4 C 0.184 3.816 5 C 0.159 3.841 6 N -0.690 5.690 7 C 0.090 3.910 8 H 0.060 0.940 9 C -0.136 4.136 10 C -0.122 4.122 11 C 0.117 3.883 12 N -0.710 5.710 13 C 0.532 3.468 14 O -0.565 6.565 15 C -0.111 4.111 16 S -0.179 6.179 17 C -0.528 4.528 18 H 0.064 0.936 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.238 1.238 25 O -0.205 6.205 26 C -0.051 4.051 27 C -0.066 4.066 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.342 0.658 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.419 0.581 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.277 0.723 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.674 -27.497 -20.915 35.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.165 4.165 3 N -0.240 5.240 4 C -0.023 4.023 5 C 0.029 3.971 6 N -0.325 5.325 7 C -0.019 4.019 8 H 0.078 0.922 9 C -0.194 4.194 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.364 5.364 13 C 0.318 3.682 14 O -0.444 6.444 15 C -0.262 4.262 16 S 0.047 5.953 17 C -0.676 4.676 18 H 0.082 0.918 19 C -0.160 4.160 20 N -0.553 5.553 21 Si 0.736 3.264 22 H -0.188 1.188 23 H -0.182 1.182 24 H -0.162 1.162 25 O -0.092 6.092 26 C -0.104 4.104 27 C -0.122 4.122 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.256 0.744 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.086 0.914 45 H 0.119 0.881 46 H 0.104 0.896 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.405 -27.052 -22.044 35.673 hybrid contribution 0.339 0.621 1.205 1.398 sum 7.745 -26.431 -20.838 34.537 Atomic orbital electron populations 1.20216 0.84805 1.03977 1.03634 1.22087 0.99379 0.87689 1.07393 1.70356 1.01656 1.33031 1.18910 1.26418 0.95366 0.79573 1.00965 1.20371 0.89871 0.94714 0.92125 1.60663 1.09699 1.50538 1.11594 1.21553 0.90784 0.92645 0.96958 0.92211 1.21777 0.95191 0.99969 1.02460 1.21951 0.97572 0.97705 0.98733 1.21459 0.99452 0.94230 0.85559 1.45692 1.27636 1.41266 1.21781 1.20017 0.81582 0.79549 0.87099 1.90701 1.37507 1.66276 1.49874 1.23271 1.02786 1.01274 0.98826 1.84759 1.35232 1.50357 1.24944 1.22454 1.14629 1.27700 1.02798 0.91825 1.25562 1.00175 0.94587 0.95691 1.70016 1.38470 1.27991 1.18870 0.85873 0.79991 0.79115 0.81430 1.18782 1.18220 1.16197 1.84386 1.30895 1.24039 1.69846 1.24009 0.80135 0.99895 1.06410 1.20504 1.02918 0.83620 1.05141 0.89712 0.88208 0.91931 0.86134 0.90291 0.83762 0.92249 0.90664 0.92292 0.89568 0.87851 0.92304 0.93255 0.74377 0.86818 0.86578 0.91355 0.88101 0.89584 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.22 71.24 0.73 -0.32 16 2 C -0.05 -1.00 7.11 41.26 0.29 -0.71 16 3 N -0.51 -13.35 11.29 -291.98 -3.30 -16.65 16 4 C 0.18 4.09 7.86 88.34 0.69 4.78 16 5 C 0.16 2.49 6.11 85.56 0.52 3.01 16 6 N -0.69 -10.92 6.30 -495.55 -3.12 -14.04 16 7 C 0.09 1.02 2.65 44.92 0.12 1.14 16 8 H 0.06 0.64 7.80 -2.39 -0.02 0.63 16 9 C -0.14 -1.20 9.42 71.98 0.68 -0.52 16 10 C -0.12 -1.42 4.92 30.60 0.15 -1.27 16 11 C 0.12 2.33 5.50 86.38 0.48 2.80 16 12 N -0.71 -16.28 5.56 -463.04 -2.57 -18.85 16 13 C 0.53 18.46 7.85 87.66 0.69 19.15 16 14 O -0.57 -24.82 15.86 -3.04 -0.05 -24.87 16 15 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 16 S -0.18 -9.20 18.55 -56.49 -1.05 -10.25 16 17 C -0.53 -30.98 10.04 67.96 0.68 -30.30 16 18 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 19 C 0.05 2.68 5.50 84.86 0.47 3.15 16 20 N -0.92 -56.00 13.97 21.65 0.30 -55.70 16 21 Si 0.91 45.57 27.74 68.60 1.90 47.47 16 22 H -0.26 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.24 -11.90 6.74 99.48 0.67 -11.23 16 25 O -0.20 -4.46 10.78 -3.77 -0.04 -4.50 16 26 C -0.05 -0.95 7.39 24.79 0.18 -0.76 16 27 C -0.07 -0.54 10.22 71.23 0.73 0.19 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 0.91 7.16 -2.39 -0.02 0.90 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.12 1.36 7.44 -2.39 -0.02 1.34 16 32 H 0.08 1.19 8.05 -2.39 -0.02 1.17 16 33 H 0.34 6.69 6.46 -89.70 -0.58 6.11 16 34 H 0.06 0.50 7.45 -2.39 -0.02 0.48 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.05 1.17 6.43 -2.39 -0.02 1.15 16 41 H 0.42 6.63 8.47 -92.70 -0.79 5.84 16 42 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 43 H 0.12 3.97 8.14 -2.40 -0.02 3.95 16 44 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 45 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 46 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.11 0.49 7.16 -2.39 -0.02 0.47 16 Total: -1.00 -81.91 404.24 -1.49 -83.40 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.41 Total: 17.37 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 6.85 Total: -3.38 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -8.69 Total: -105.24 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.09 Total: -29.38 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.05 Total: -10.25 kcal Total: -81.91 -1.49 -83.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491986108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.908 kcal (2) G-P(sol) polarization free energy of solvation -81.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds