Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30255 * 125.62079 * 2 1 4 4 C 1.34479 * 108.70248 * 179.97438 * 3 2 1 5 5 C 1.50690 * 126.16445 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47106 * 90.02566 * 5 4 3 7 7 C 1.46904 * 110.99779 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47039 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47217 * 305.00455 * 8 7 6 10 10 C 1.53008 * 109.46816 * 65.00174 * 8 7 6 11 11 C 1.52996 * 109.47336 * 184.99857 * 8 7 6 12 12 N 1.46498 * 109.47059 * 175.00083 * 11 8 7 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 8 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46850 * 90.00589 * 21 19 17 23 23 H 1.48498 * 109.47329 * 210.00016 * 21 19 17 24 24 H 1.48499 * 109.47220 * 330.01003 * 21 19 17 25 25 C 1.34332 * 107.66633 * 0.26038 * 4 3 2 26 26 C 1.50692 * 126.44151 * 179.73309 * 25 4 3 27 27 O 1.33971 * 125.61879 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47034 * 89.99860 * 1 2 3 29 29 H 1.09002 * 109.47219 * 209.99787 * 1 2 3 30 30 H 1.08997 * 109.47320 * 329.99765 * 1 2 3 31 31 H 1.09003 * 109.47278 * 330.02402 * 5 4 3 32 32 H 1.09004 * 109.47079 * 210.02573 * 5 4 3 33 33 H 1.00897 * 111.00127 * 56.04230 * 6 5 4 34 34 H 1.09005 * 109.47147 * 60.00369 * 7 6 5 35 35 H 1.08996 * 109.47325 * 299.99917 * 7 6 5 36 36 H 1.09000 * 109.46973 * 59.99593 * 10 8 7 37 37 H 1.08995 * 109.47053 * 180.02562 * 10 8 7 38 38 H 1.09001 * 109.46930 * 299.99894 * 10 8 7 39 39 H 1.09004 * 109.47066 * 55.00351 * 11 8 7 40 40 H 1.08994 * 109.46974 * 295.00498 * 11 8 7 41 41 H 0.97001 * 120.00384 * 0.02562 * 12 11 8 42 42 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 43 43 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 44 44 H 0.96991 * 119.99795 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.47005 * 90.00388 * 26 25 4 46 46 H 1.09003 * 109.47414 * 210.00314 * 26 25 4 47 47 H 1.09001 * 109.47545 * 330.00552 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5726 0.0013 6 7 5.1482 1.8660 1.3865 7 6 6.3226 2.7476 1.4264 8 6 6.6988 3.0305 2.8823 9 1 5.8341 3.4342 3.4091 10 6 7.1451 1.7309 3.5554 11 6 7.8423 4.0460 2.9255 12 7 8.1225 4.4069 4.3174 13 6 9.1014 5.2888 4.6009 14 8 9.7471 5.7874 3.7035 15 6 9.3939 5.6554 6.0331 16 16 10.7506 6.8524 6.0846 17 6 10.8766 7.0973 7.8249 18 1 10.2154 6.5669 8.4942 19 6 11.8264 7.9711 8.3358 20 7 12.6326 8.6172 7.5202 21 14 11.9596 8.2313 10.1808 22 1 12.9173 7.2501 10.7512 23 1 12.4418 9.6092 10.4529 24 1 10.6256 8.0412 10.8051 25 6 3.5698 -0.6757 -0.0049 26 6 4.7936 -1.5549 -0.0121 27 8 2.2872 -1.0891 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 4.5131 2.5027 -0.5121 32 1 5.5822 1.0796 -0.5126 33 1 5.3171 1.0155 1.9024 34 1 6.0899 3.6859 0.9228 35 1 7.1585 2.2623 0.9226 36 1 8.0096 1.3272 3.0286 37 1 7.4126 1.9324 4.5927 38 1 6.3304 1.0075 3.5246 39 1 7.5566 4.9388 2.3691 40 1 8.7341 3.6083 2.4771 41 1 7.6063 4.0080 5.0353 42 1 8.5045 6.0951 6.4845 43 1 9.6774 4.7603 6.5867 44 1 13.2960 9.2281 7.8772 45 1 5.0917 -1.7711 1.0138 46 1 4.5680 -2.4876 -0.5290 47 1 5.6065 -1.0420 -0.5262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495624198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = -30.926831 kcal Electronic energy + Delta-G solvation = -25713.746750 eV Core-core repulsion = 21830.937269 eV Total energy + Delta-G solvation = -3882.809481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.75967 -39.32507 -37.86389 -35.90416 -34.73100 -33.65140 -32.41478 -32.13619 -30.62669 -29.37811 -27.87983 -26.62721 -25.48898 -25.00885 -23.69770 -22.13172 -20.98436 -20.56367 -20.15084 -17.83035 -17.33174 -17.25600 -16.42019 -16.28162 -15.91157 -15.44740 -15.09121 -14.82281 -14.78317 -14.68639 -14.26207 -14.02958 -13.99514 -13.80965 -13.30024 -13.26946 -13.23585 -13.07095 -12.92197 -12.82190 -12.61513 -12.50532 -12.31262 -11.80217 -11.53630 -11.26903 -11.13590 -11.05989 -11.03925 -11.00774 -10.82337 -10.74219 -9.79886 -9.37614 -9.05519 -9.03791 -8.85436 -8.79154 -8.21590 -6.48105 -6.20173 -3.90530 0.98058 2.18711 2.21998 3.05575 3.13973 3.23431 3.29017 3.33235 3.51365 3.70497 3.96262 4.22022 4.22204 4.36338 4.52036 4.60314 4.63070 4.64354 4.77249 4.82915 4.87280 4.96969 5.06133 5.14962 5.17965 5.18530 5.19451 5.26686 5.36191 5.39215 5.53386 5.57722 5.61996 5.62577 5.69170 5.75956 5.88105 5.91705 5.98951 6.06018 6.16572 6.52673 6.67388 6.91819 7.37251 7.61094 7.74873 8.36768 8.65373 9.25155 10.87289 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.001405 C = 0.001389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.724992 B =19927.530730 C =20148.129935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.185 3.815 3 N -0.465 5.465 4 C -0.004 4.004 5 C 0.141 3.859 6 N -0.681 5.681 7 C 0.067 3.933 8 C -0.102 4.102 9 H 0.088 0.912 10 C -0.151 4.151 11 C 0.127 3.873 12 N -0.737 5.737 13 C 0.531 3.469 14 O -0.519 6.519 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.047 4.047 26 C -0.070 4.070 27 O -0.203 6.203 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.340 0.660 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.229 -23.414 -16.005 36.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.022 4.022 3 N -0.194 5.194 4 C -0.124 4.124 5 C 0.012 3.988 6 N -0.313 5.313 7 C -0.063 4.063 8 C -0.121 4.121 9 H 0.106 0.894 10 C -0.209 4.209 11 C 0.003 3.997 12 N -0.392 5.392 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.101 4.101 26 C -0.127 4.127 27 O -0.091 6.091 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.159 0.841 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.695 -21.343 -17.477 35.095 hybrid contribution -0.016 -1.915 2.320 3.008 sum -21.711 -23.258 -15.157 35.242 Atomic orbital electron populations 1.20256 0.81231 1.05204 1.04649 1.26270 0.96440 0.78519 1.01001 1.70352 1.01533 1.30044 1.17505 1.21283 0.93267 0.91450 1.06445 1.20115 0.90437 0.97792 0.90498 1.60420 1.37701 1.20782 1.12434 1.21917 0.90552 0.97643 0.96140 1.21362 0.98408 0.96010 0.96284 0.89387 1.21893 1.00984 0.96752 1.01232 1.21231 0.97242 0.97627 0.83647 1.45982 1.38188 1.46799 1.08217 1.20298 0.78891 0.77934 0.91167 1.90700 1.48503 1.51938 1.48174 1.23531 1.06379 1.05559 0.94938 1.85391 1.37812 1.50506 1.09689 1.22877 1.22894 1.30916 0.91714 0.90933 1.24989 0.94700 0.94803 0.99061 1.70019 1.19247 1.26233 1.34806 0.86171 0.78502 0.77685 0.83154 1.20289 1.20746 1.19702 1.23202 0.84030 0.95073 1.07787 1.20306 0.89993 0.98459 1.03929 1.84377 1.16484 1.37891 1.70310 0.88972 0.89402 0.87977 0.89020 0.93362 0.84093 0.90178 0.94525 0.92491 0.92035 0.92511 0.91504 0.91679 0.76829 0.89231 0.89284 0.92198 0.89649 0.90160 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.18 1.59 8.34 -12.95 -0.11 1.48 16 3 N -0.46 -5.04 11.29 -7.36 -0.08 -5.12 16 4 C 0.00 -0.04 6.62 -82.82 -0.55 -0.59 16 5 C 0.14 1.08 6.02 -4.98 -0.03 1.05 16 6 N -0.68 -5.35 6.49 -115.05 -0.75 -6.09 16 7 C 0.07 0.50 5.14 -3.82 -0.02 0.48 16 8 C -0.10 -0.84 2.63 -90.62 -0.24 -1.07 16 9 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 10 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 11 C 0.13 1.45 5.06 -4.04 -0.02 1.43 16 12 N -0.74 -9.83 5.28 -60.30 -0.32 -10.15 16 13 C 0.53 10.01 7.85 -10.98 -0.09 9.92 16 14 O -0.52 -11.93 15.86 5.55 0.09 -11.84 16 15 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 21 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.05 -0.37 7.39 -35.69 -0.26 -0.64 16 26 C -0.07 -0.29 10.22 36.00 0.37 0.08 16 27 O -0.20 -1.81 10.78 5.36 0.06 -1.75 16 28 H 0.09 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.28 7.16 -51.93 -0.37 -0.09 16 33 H 0.34 2.37 6.97 -39.29 -0.27 2.10 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.47 7.18 -51.93 -0.37 0.10 16 38 H 0.06 0.35 6.68 -51.93 -0.35 0.01 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.40 4.20 7.65 -40.82 -0.31 3.89 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.26 7.16 -51.93 -0.37 -0.11 16 LS Contribution 407.05 15.07 6.13 6.13 Total: -1.00 -37.41 407.05 -8.70 -46.11 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.51 Total: 0.10 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 0.18 Total: -4.43 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.41 Total: -46.93 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.15 Total: -13.59 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.41 -8.70 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495624198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.185 kcal (2) G-P(sol) polarization free energy of solvation -37.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds