Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30255 * 125.62079 * 2 1 4 4 C 1.34479 * 108.70248 * 179.97438 * 3 2 1 5 5 C 1.50690 * 126.16445 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47106 * 90.02566 * 5 4 3 7 7 C 1.46904 * 110.99779 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47039 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47217 * 305.00455 * 8 7 6 10 10 C 1.53008 * 109.46816 * 65.00174 * 8 7 6 11 11 C 1.52996 * 109.47336 * 184.99857 * 8 7 6 12 12 N 1.46498 * 109.47059 * 175.00083 * 11 8 7 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 8 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46850 * 90.00589 * 21 19 17 23 23 H 1.48498 * 109.47329 * 210.00016 * 21 19 17 24 24 H 1.48499 * 109.47220 * 330.01003 * 21 19 17 25 25 C 1.34332 * 107.66633 * 0.26038 * 4 3 2 26 26 C 1.50692 * 126.44151 * 179.73309 * 25 4 3 27 27 O 1.33971 * 125.61879 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47034 * 89.99860 * 1 2 3 29 29 H 1.09002 * 109.47219 * 209.99787 * 1 2 3 30 30 H 1.08997 * 109.47320 * 329.99765 * 1 2 3 31 31 H 1.09003 * 109.47278 * 330.02402 * 5 4 3 32 32 H 1.09004 * 109.47079 * 210.02573 * 5 4 3 33 33 H 1.00897 * 111.00127 * 56.04230 * 6 5 4 34 34 H 1.09005 * 109.47147 * 60.00369 * 7 6 5 35 35 H 1.08996 * 109.47325 * 299.99917 * 7 6 5 36 36 H 1.09000 * 109.46973 * 59.99593 * 10 8 7 37 37 H 1.08995 * 109.47053 * 180.02562 * 10 8 7 38 38 H 1.09001 * 109.46930 * 299.99894 * 10 8 7 39 39 H 1.09004 * 109.47066 * 55.00351 * 11 8 7 40 40 H 1.08994 * 109.46974 * 295.00498 * 11 8 7 41 41 H 0.97001 * 120.00384 * 0.02562 * 12 11 8 42 42 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 43 43 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 44 44 H 0.96991 * 119.99795 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.47005 * 90.00388 * 26 25 4 46 46 H 1.09003 * 109.47414 * 210.00314 * 26 25 4 47 47 H 1.09001 * 109.47545 * 330.00552 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5726 0.0013 6 7 5.1482 1.8660 1.3865 7 6 6.3226 2.7476 1.4264 8 6 6.6988 3.0305 2.8823 9 1 5.8341 3.4342 3.4091 10 6 7.1451 1.7309 3.5554 11 6 7.8423 4.0460 2.9255 12 7 8.1225 4.4069 4.3174 13 6 9.1014 5.2888 4.6009 14 8 9.7471 5.7874 3.7035 15 6 9.3939 5.6554 6.0331 16 16 10.7506 6.8524 6.0846 17 6 10.8766 7.0973 7.8249 18 1 10.2154 6.5669 8.4942 19 6 11.8264 7.9711 8.3358 20 7 12.6326 8.6172 7.5202 21 14 11.9596 8.2313 10.1808 22 1 12.9173 7.2501 10.7512 23 1 12.4418 9.6092 10.4529 24 1 10.6256 8.0412 10.8051 25 6 3.5698 -0.6757 -0.0049 26 6 4.7936 -1.5549 -0.0121 27 8 2.2872 -1.0891 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 4.5131 2.5027 -0.5121 32 1 5.5822 1.0796 -0.5126 33 1 5.3171 1.0155 1.9024 34 1 6.0899 3.6859 0.9228 35 1 7.1585 2.2623 0.9226 36 1 8.0096 1.3272 3.0286 37 1 7.4126 1.9324 4.5927 38 1 6.3304 1.0075 3.5246 39 1 7.5566 4.9388 2.3691 40 1 8.7341 3.6083 2.4771 41 1 7.6063 4.0080 5.0353 42 1 8.5045 6.0951 6.4845 43 1 9.6774 4.7603 6.5867 44 1 13.2960 9.2281 7.8772 45 1 5.0917 -1.7711 1.0138 46 1 4.5680 -2.4876 -0.5290 47 1 5.6065 -1.0420 -0.5262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495624198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = -60.675041 kcal Electronic energy + Delta-G solvation = -25715.036729 eV Core-core repulsion = 21830.937269 eV Total energy + Delta-G solvation = -3884.099460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.35277 -40.68760 -38.67337 -36.72516 -35.50316 -34.58166 -34.37407 -33.00997 -30.97099 -30.83315 -28.45697 -27.77717 -27.33049 -25.63828 -24.42796 -22.73550 -21.79451 -21.56282 -21.10974 -19.79156 -17.99425 -17.93747 -17.65773 -17.36833 -16.87566 -16.82479 -16.58464 -15.94100 -15.70909 -15.52972 -15.42474 -14.87310 -14.69294 -14.57200 -14.37692 -14.26359 -14.00375 -13.68699 -13.60908 -13.54715 -13.34320 -13.29750 -13.15908 -13.05519 -12.89475 -12.87569 -12.61732 -12.18904 -12.00101 -11.84493 -11.76310 -11.70360 -11.46007 -11.13670 -10.95211 -10.27105 -10.09686 -9.59359 -9.37618 -8.66139 -8.34107 -6.12252 0.41314 1.27682 1.43017 1.47551 1.56101 1.59267 1.62795 1.72331 2.26645 2.31128 3.00073 3.01975 3.28542 3.34581 3.74493 3.79412 3.86221 3.92176 3.99682 4.06519 4.16821 4.30683 4.35182 4.45647 4.51626 4.52591 4.58263 4.61375 4.62924 4.66362 4.73082 4.79821 4.84520 4.89313 4.96643 5.01479 5.08253 5.18840 5.25408 5.34658 5.37186 5.42422 5.48875 5.94441 6.20405 6.38395 6.51922 6.77475 7.07202 7.25790 8.75179 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.001405 C = 0.001389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.724992 B =19927.530730 C =20148.129935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.177 3.823 3 N -0.506 5.506 4 C -0.029 4.029 5 C 0.145 3.855 6 N -0.688 5.688 7 C 0.071 3.929 8 C -0.087 4.087 9 H 0.085 0.915 10 C -0.149 4.149 11 C 0.127 3.873 12 N -0.710 5.710 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.130 4.130 16 S -0.152 6.152 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.258 1.258 25 C -0.048 4.048 26 C -0.070 4.070 27 O -0.213 6.213 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.346 0.654 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.415 0.585 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.271 0.729 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.598 -25.644 -14.806 37.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.029 4.029 3 N -0.236 5.236 4 C -0.148 4.148 5 C 0.016 3.984 6 N -0.321 5.321 7 C -0.058 4.058 8 C -0.106 4.106 9 H 0.104 0.896 10 C -0.206 4.206 11 C 0.003 3.997 12 N -0.364 5.364 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.281 4.281 16 S 0.075 5.925 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.182 1.182 25 C -0.101 4.101 26 C -0.126 4.126 27 O -0.101 6.101 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.166 0.834 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.252 0.748 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.108 0.892 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.111 -23.621 -16.274 36.836 hybrid contribution 0.295 -1.312 1.854 2.290 sum -22.816 -24.933 -14.420 36.744 Atomic orbital electron populations 1.20481 0.78578 1.06223 1.05967 1.27111 0.97855 0.78079 0.99887 1.70332 1.02689 1.31442 1.19167 1.21552 0.93232 0.92374 1.07680 1.20081 0.90706 0.97171 0.90424 1.60351 1.37739 1.21229 1.12826 1.21830 0.90942 0.97507 0.95514 1.21213 0.96764 0.95602 0.97019 0.89618 1.21884 1.01614 0.96245 1.00899 1.21363 0.98329 0.98101 0.81944 1.45734 1.36168 1.44631 1.09897 1.20061 0.79616 0.78552 0.89940 1.90690 1.50683 1.54148 1.49061 1.23377 1.03853 1.04141 0.96742 1.85571 1.42201 1.53947 1.10759 1.23218 1.23326 1.31256 0.91740 0.89900 1.26125 0.94029 0.94199 1.04719 1.70184 1.20107 1.27077 1.37410 0.84951 0.79147 0.77760 0.76100 1.19247 1.20304 1.18238 1.23848 0.84603 0.95278 1.06406 1.20500 0.88660 0.98361 1.05092 1.84394 1.17066 1.38192 1.70482 0.87393 0.87532 0.87713 0.90497 0.91213 0.83372 0.91023 0.93378 0.92250 0.92173 0.91096 0.92575 0.92080 0.74778 0.87331 0.87122 0.91993 0.88326 0.89223 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.18 2.98 8.34 88.34 0.74 3.72 16 3 N -0.51 -10.99 11.29 -291.98 -3.30 -14.28 16 4 C -0.03 -0.52 6.62 41.26 0.27 -0.25 16 5 C 0.15 2.11 6.02 85.55 0.51 2.63 16 6 N -0.69 -9.80 6.49 -517.92 -3.36 -13.16 16 7 C 0.07 0.97 5.14 86.30 0.44 1.41 16 8 C -0.09 -1.26 2.63 -10.79 -0.03 -1.29 16 9 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 10 C -0.15 -1.76 8.84 71.98 0.64 -1.12 16 11 C 0.13 2.74 5.06 86.38 0.44 3.18 16 12 N -0.71 -17.77 5.28 -463.07 -2.45 -20.21 16 13 C 0.53 19.75 7.85 87.66 0.69 20.44 16 14 O -0.57 -26.56 15.86 -3.04 -0.05 -26.61 16 15 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 16 S -0.15 -8.50 20.57 -56.49 -1.16 -9.67 16 17 C -0.55 -31.44 9.50 67.96 0.65 -30.80 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.25 13.22 21.65 0.29 -55.96 16 21 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 C -0.05 -0.70 7.39 24.79 0.18 -0.52 16 26 C -0.07 -0.42 10.22 71.23 0.73 0.30 16 27 O -0.21 -3.64 10.78 -3.75 -0.04 -3.68 16 28 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 0.68 7.16 -2.38 -0.02 0.66 16 33 H 0.35 4.09 6.97 -89.70 -0.63 3.46 16 34 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.74 7.18 -2.39 -0.02 0.72 16 38 H 0.07 0.67 6.68 -2.39 -0.02 0.65 16 39 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.41 7.65 7.65 -92.71 -0.71 6.94 16 42 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 43 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 44 H 0.27 15.51 8.31 -92.72 -0.77 14.74 16 45 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.10 0.33 7.16 -2.39 -0.02 0.32 16 Total: -1.00 -83.90 407.05 -1.48 -85.38 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.35 Total: 17.87 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 6.91 Total: -5.40 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -8.82 Total: -103.62 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.09 Total: -30.28 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.67 kcal Total: -83.90 -1.48 -85.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495624198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.704 kcal (2) G-P(sol) polarization free energy of solvation -83.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds