Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30258 * 125.61867 * 2 1 4 4 C 1.34474 * 108.70072 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16658 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.67029 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.44432 * 180.25867 * 6 4 3 8 8 N 1.46907 * 109.46873 * 89.71000 * 7 6 4 9 9 C 1.46894 * 111.00104 * 293.95617 * 8 7 6 10 10 C 1.46901 * 110.99622 * 169.99713 * 8 7 6 11 11 C 1.53006 * 109.46814 * 190.00291 * 10 8 7 12 12 N 1.46494 * 109.46760 * 180.02562 * 11 10 8 13 13 C 1.46506 * 120.00165 * 269.99452 * 12 11 10 14 14 C 1.34783 * 120.00322 * 90.00438 * 12 11 10 15 15 O 1.21275 * 119.99667 * 359.97438 * 14 12 11 16 16 C 1.50699 * 120.00144 * 179.97438 * 14 12 11 17 17 S 1.80995 * 109.46989 * 179.97438 * 16 14 12 18 18 C 1.76196 * 100.00116 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00247 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00372 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99793 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00207 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47245 * 90.00121 * 22 20 18 24 24 H 1.48497 * 109.47188 * 210.00114 * 22 20 18 25 25 H 1.48504 * 109.47350 * 330.00355 * 22 20 18 26 26 O 1.33964 * 125.61941 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46932 * 269.97510 * 1 2 3 28 28 H 1.08994 * 109.47103 * 29.97476 * 1 2 3 29 29 H 1.09002 * 109.47223 * 149.98071 * 1 2 3 30 30 H 1.08997 * 109.47862 * 269.98311 * 5 4 3 31 31 H 1.09010 * 109.47022 * 29.98255 * 5 4 3 32 32 H 1.08995 * 109.47218 * 149.97465 * 5 4 3 33 33 H 1.08995 * 109.47419 * 209.71053 * 7 6 4 34 34 H 1.09002 * 109.47246 * 329.71470 * 7 6 4 35 35 H 1.09000 * 109.47409 * 59.99857 * 9 8 7 36 36 H 1.09005 * 109.46837 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47274 * 299.99661 * 9 8 7 38 38 H 1.09000 * 109.47634 * 310.00182 * 10 8 7 39 39 H 1.09006 * 109.47163 * 70.00737 * 10 8 7 40 40 H 1.09000 * 109.46931 * 300.00322 * 11 10 8 41 41 H 1.08997 * 109.47086 * 60.00252 * 11 10 8 42 42 H 1.09001 * 109.46644 * 90.00503 * 13 12 11 43 43 H 1.08997 * 109.47236 * 210.00415 * 13 12 11 44 44 H 1.08993 * 109.46995 * 330.00828 * 13 12 11 45 45 H 1.08999 * 109.47241 * 299.99477 * 16 14 12 46 46 H 1.08997 * 109.47140 * 59.99849 * 16 14 12 47 47 H 0.96996 * 120.00453 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 6 3.5698 -0.6756 -0.0015 7 6 4.7937 -1.5548 0.0031 8 7 5.1895 -1.8359 1.3896 9 6 5.6359 -0.6118 2.0681 10 6 6.2271 -2.8745 1.4406 11 6 6.4349 -3.3170 2.8905 12 7 7.4701 -4.3523 2.9414 13 6 7.1001 -5.7648 2.8210 14 6 8.7629 -4.0055 3.0991 15 8 9.0693 -2.8363 3.1984 16 6 9.8278 -5.0706 3.1520 17 16 11.4480 -4.2935 3.3685 18 6 12.4731 -5.7263 3.3971 19 1 12.0331 -6.7073 3.2946 20 6 13.8464 -5.5943 3.5504 21 7 14.3828 -4.3988 3.6748 22 14 14.9330 -7.1133 3.5815 23 1 15.3688 -7.4387 2.1995 24 1 16.1250 -6.8521 4.4277 25 1 14.1692 -8.2570 4.1417 26 8 2.2872 -1.0890 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 5.0476 1.7915 -1.0277 31 1 4.5130 2.5023 0.5141 32 1 5.5820 1.0792 0.5134 33 1 4.5703 -2.4913 -0.5079 34 1 5.6088 -1.0457 -0.5113 35 1 4.8240 0.1154 2.0769 36 1 5.9235 -0.8485 3.0925 37 1 6.4920 -0.1942 1.5381 38 1 5.9152 -3.7295 0.8409 39 1 7.1611 -2.4747 1.0454 40 1 6.7468 -2.4619 3.4902 41 1 5.5010 -3.7167 3.2857 42 1 7.1171 -6.0565 1.7709 43 1 7.8099 -6.3751 3.3793 44 1 6.0980 -5.9134 3.2232 45 1 9.6308 -5.7400 3.9894 46 1 9.8193 -5.6394 2.2223 47 1 15.3423 -4.3064 3.7823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496657826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = -2.674694 kcal Electronic energy + Delta-G solvation = -26823.569458 eV Core-core repulsion = 22941.985082 eV Total energy + Delta-G solvation = -3881.584377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.62547 -39.63980 -38.01229 -35.50520 -35.26448 -33.28852 -32.44935 -31.00203 -29.69436 -29.22381 -28.20308 -26.79390 -25.77178 -25.43535 -23.77160 -21.99472 -21.67336 -20.61591 -19.21175 -17.71213 -17.31194 -16.91015 -16.68816 -16.25138 -15.73686 -15.55869 -15.15668 -14.92976 -14.82211 -14.47022 -13.92936 -13.77608 -13.62325 -13.59204 -13.38662 -13.28160 -13.01386 -12.95914 -12.80736 -12.64460 -12.57261 -12.32873 -12.14030 -12.04263 -11.81696 -11.65906 -11.14396 -11.08208 -11.04495 -10.96141 -10.76924 -10.73477 -9.82716 -9.42434 -9.08571 -8.96655 -8.74416 -8.49348 -8.25219 -6.52584 -6.23665 -3.94444 1.11500 2.29896 2.37998 2.86809 3.00956 3.20659 3.23504 3.28467 3.51644 3.67484 3.83738 4.18392 4.39475 4.50580 4.62268 4.71426 4.84990 4.93020 4.94774 4.97563 5.07607 5.10657 5.11941 5.14635 5.22988 5.26481 5.32016 5.40158 5.41950 5.42051 5.48460 5.53658 5.66554 5.72319 5.73116 5.77399 5.81209 5.86956 5.93532 6.09052 6.10872 6.47067 6.60095 6.75643 7.47706 7.48569 7.57641 8.33107 8.51136 9.21668 10.83768 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028226 B = 0.001811 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.750560 B =15456.595090 C =16039.390832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.187 3.813 3 N -0.483 5.483 4 C -0.005 4.005 5 C -0.084 4.084 6 C -0.035 4.035 7 C 0.139 3.861 8 N -0.537 5.537 9 C 0.012 3.988 10 C 0.040 3.960 11 C 0.122 3.878 12 N -0.625 5.625 13 C 0.081 3.919 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 O -0.193 6.193 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.896 4.467 -7.684 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 N -0.214 5.214 4 C -0.126 4.126 5 C -0.141 4.141 6 C -0.088 4.088 7 C 0.011 3.989 8 N -0.262 5.262 9 C -0.136 4.136 10 C -0.088 4.088 11 C -0.001 4.001 12 N -0.361 5.361 13 C -0.063 4.063 14 C 0.321 3.679 15 O -0.389 6.389 16 C -0.301 4.301 17 S 0.164 5.836 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 O -0.080 6.080 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.922 6.677 -7.249 28.669 hybrid contribution 1.201 -2.800 -0.577 3.101 sum -25.721 3.877 -7.825 27.163 Atomic orbital electron populations 1.20242 0.81352 1.04999 1.04710 1.26212 0.96402 0.78762 1.00580 1.70348 1.01635 1.30380 1.19010 1.21511 0.93386 0.92117 1.05575 1.20391 0.92203 0.98363 1.03129 1.22908 0.83508 0.94374 1.08059 1.20388 0.89444 0.98308 0.90745 1.61894 1.40296 1.09875 1.14100 1.22726 0.99297 0.91530 1.00023 1.22528 0.93120 0.94396 0.98781 1.21321 0.90818 0.92307 0.95694 1.47848 1.06514 1.07051 1.74682 1.21791 1.01473 0.81329 1.01684 1.20381 0.82316 0.90163 0.75075 1.90687 1.80893 1.19551 1.47778 1.23559 1.00889 1.00846 1.04792 1.85385 0.91514 1.11433 1.95220 1.22859 0.94038 0.93377 1.58090 0.90937 1.24991 0.97085 0.96964 0.94522 1.70013 1.12241 1.21871 1.46134 0.86170 0.79470 0.81639 0.78233 1.20275 1.20734 1.19685 1.84381 1.16491 1.37461 1.69667 0.88914 0.88212 0.89377 0.90714 0.90376 0.90073 0.88743 0.90912 0.91067 0.90365 0.94456 0.90467 0.93405 0.89681 0.90023 0.92810 0.90578 0.91256 0.89199 0.89272 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.19 1.86 8.34 -12.95 -0.11 1.75 16 3 N -0.48 -5.70 11.29 -7.36 -0.08 -5.79 16 4 C -0.01 -0.06 6.18 -82.81 -0.51 -0.57 16 5 C -0.08 -0.73 9.50 36.01 0.34 -0.38 16 6 C -0.03 -0.38 6.28 -35.69 -0.22 -0.60 16 7 C 0.14 1.29 5.19 -4.97 -0.03 1.26 16 8 N -0.54 -5.52 4.75 -244.36 -1.16 -6.68 16 9 C 0.01 0.12 7.78 60.06 0.47 0.59 16 10 C 0.04 0.44 5.28 -3.82 -0.02 0.42 16 11 C 0.12 1.45 5.38 -4.04 -0.02 1.43 16 12 N -0.62 -8.49 2.87 -181.57 -0.52 -9.01 16 13 C 0.08 0.80 10.29 59.85 0.62 1.42 16 14 C 0.53 9.86 7.69 -10.98 -0.08 9.77 16 15 O -0.52 -11.40 15.44 5.56 0.09 -11.31 16 16 C -0.15 -3.00 4.71 36.01 0.17 -2.83 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 22 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 O -0.19 -2.15 10.78 5.36 0.06 -2.10 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.08 0.65 4.63 -51.93 -0.24 0.41 16 33 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 34 H 0.07 0.61 7.78 -51.93 -0.40 0.21 16 35 H 0.07 0.73 5.65 -51.93 -0.29 0.43 16 36 H 0.08 0.84 6.30 -51.93 -0.33 0.51 16 37 H 0.04 0.38 7.08 -51.93 -0.37 0.02 16 38 H 0.08 0.75 7.93 -51.93 -0.41 0.33 16 39 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 40 H 0.08 1.16 5.75 -51.93 -0.30 0.87 16 41 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 44 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 45 H 0.09 1.66 7.40 -51.92 -0.38 1.28 16 46 H 0.09 1.65 8.11 -51.92 -0.42 1.23 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -36.03 395.80 -8.20 -44.23 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.22 Total: -1.91 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 1.18 Total: -0.47 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -1.03 Total: -46.73 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.14 Total: -13.41 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.03 -8.20 -44.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496657826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.552 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds