Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30258 * 125.61867 * 2 1 4 4 C 1.34474 * 108.70072 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16658 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.67029 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.44432 * 180.25867 * 6 4 3 8 8 N 1.46907 * 109.46873 * 89.71000 * 7 6 4 9 9 C 1.46894 * 111.00104 * 293.95617 * 8 7 6 10 10 C 1.46901 * 110.99622 * 169.99713 * 8 7 6 11 11 C 1.53006 * 109.46814 * 190.00291 * 10 8 7 12 12 N 1.46494 * 109.46760 * 180.02562 * 11 10 8 13 13 C 1.46506 * 120.00165 * 269.99452 * 12 11 10 14 14 C 1.34783 * 120.00322 * 90.00438 * 12 11 10 15 15 O 1.21275 * 119.99667 * 359.97438 * 14 12 11 16 16 C 1.50699 * 120.00144 * 179.97438 * 14 12 11 17 17 S 1.80995 * 109.46989 * 179.97438 * 16 14 12 18 18 C 1.76196 * 100.00116 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00247 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00372 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99793 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00207 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47245 * 90.00121 * 22 20 18 24 24 H 1.48497 * 109.47188 * 210.00114 * 22 20 18 25 25 H 1.48504 * 109.47350 * 330.00355 * 22 20 18 26 26 O 1.33964 * 125.61941 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46932 * 269.97510 * 1 2 3 28 28 H 1.08994 * 109.47103 * 29.97476 * 1 2 3 29 29 H 1.09002 * 109.47223 * 149.98071 * 1 2 3 30 30 H 1.08997 * 109.47862 * 269.98311 * 5 4 3 31 31 H 1.09010 * 109.47022 * 29.98255 * 5 4 3 32 32 H 1.08995 * 109.47218 * 149.97465 * 5 4 3 33 33 H 1.08995 * 109.47419 * 209.71053 * 7 6 4 34 34 H 1.09002 * 109.47246 * 329.71470 * 7 6 4 35 35 H 1.09000 * 109.47409 * 59.99857 * 9 8 7 36 36 H 1.09005 * 109.46837 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47274 * 299.99661 * 9 8 7 38 38 H 1.09000 * 109.47634 * 310.00182 * 10 8 7 39 39 H 1.09006 * 109.47163 * 70.00737 * 10 8 7 40 40 H 1.09000 * 109.46931 * 300.00322 * 11 10 8 41 41 H 1.08997 * 109.47086 * 60.00252 * 11 10 8 42 42 H 1.09001 * 109.46644 * 90.00503 * 13 12 11 43 43 H 1.08997 * 109.47236 * 210.00415 * 13 12 11 44 44 H 1.08993 * 109.46995 * 330.00828 * 13 12 11 45 45 H 1.08999 * 109.47241 * 299.99477 * 16 14 12 46 46 H 1.08997 * 109.47140 * 59.99849 * 16 14 12 47 47 H 0.96996 * 120.00453 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 6 3.5698 -0.6756 -0.0015 7 6 4.7937 -1.5548 0.0031 8 7 5.1895 -1.8359 1.3896 9 6 5.6359 -0.6118 2.0681 10 6 6.2271 -2.8745 1.4406 11 6 6.4349 -3.3170 2.8905 12 7 7.4701 -4.3523 2.9414 13 6 7.1001 -5.7648 2.8210 14 6 8.7629 -4.0055 3.0991 15 8 9.0693 -2.8363 3.1984 16 6 9.8278 -5.0706 3.1520 17 16 11.4480 -4.2935 3.3685 18 6 12.4731 -5.7263 3.3971 19 1 12.0331 -6.7073 3.2946 20 6 13.8464 -5.5943 3.5504 21 7 14.3828 -4.3988 3.6748 22 14 14.9330 -7.1133 3.5815 23 1 15.3688 -7.4387 2.1995 24 1 16.1250 -6.8521 4.4277 25 1 14.1692 -8.2570 4.1417 26 8 2.2872 -1.0890 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 5.0476 1.7915 -1.0277 31 1 4.5130 2.5023 0.5141 32 1 5.5820 1.0792 0.5134 33 1 4.5703 -2.4913 -0.5079 34 1 5.6088 -1.0457 -0.5113 35 1 4.8240 0.1154 2.0769 36 1 5.9235 -0.8485 3.0925 37 1 6.4920 -0.1942 1.5381 38 1 5.9152 -3.7295 0.8409 39 1 7.1611 -2.4747 1.0454 40 1 6.7468 -2.4619 3.4902 41 1 5.5010 -3.7167 3.2857 42 1 7.1171 -6.0565 1.7709 43 1 7.8099 -6.3751 3.3793 44 1 6.0980 -5.9134 3.2232 45 1 9.6308 -5.7400 3.9894 46 1 9.8193 -5.6394 2.2223 47 1 15.3423 -4.3064 3.7823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496657826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = -29.861015 kcal Electronic energy + Delta-G solvation = -26824.748345 eV Core-core repulsion = 22941.985082 eV Total energy + Delta-G solvation = -3882.763264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.38914 -40.92862 -38.93770 -36.61491 -36.15606 -34.58478 -34.01693 -32.05291 -30.45393 -30.13740 -29.24474 -27.70729 -27.66446 -26.56466 -24.65044 -22.75152 -22.58601 -21.37680 -20.60932 -19.53464 -18.25048 -17.93523 -17.65969 -17.35671 -16.87977 -16.81613 -16.45219 -16.29082 -15.91990 -15.60596 -15.21308 -14.66759 -14.63281 -14.42304 -14.25878 -14.24281 -14.12787 -13.81959 -13.65243 -13.57712 -13.49610 -13.29627 -13.17794 -13.10412 -12.89770 -12.83032 -12.79530 -12.60322 -12.48498 -11.93362 -11.88542 -11.69682 -11.53401 -11.14175 -10.91252 -10.26480 -9.80267 -9.74544 -9.38868 -8.67133 -8.34635 -6.12796 0.35351 1.25767 1.42487 1.45424 1.52813 1.57373 1.58297 1.67359 2.08730 2.27624 2.92130 2.99621 3.06329 3.27633 3.66948 3.70920 3.77654 3.86637 4.03112 4.07860 4.21759 4.22337 4.33925 4.38647 4.42227 4.46578 4.49324 4.54109 4.62107 4.63332 4.66256 4.69427 4.73870 4.76612 4.88388 4.90432 4.95956 4.98478 5.04072 5.15313 5.39941 5.41852 5.48565 5.78102 5.83832 6.19660 6.26671 6.71572 7.06709 7.13928 8.74546 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028226 B = 0.001811 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.750560 B =15456.595090 C =16039.390832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.189 3.811 3 N -0.517 5.517 4 C -0.019 4.019 5 C -0.082 4.082 6 C -0.047 4.047 7 C 0.141 3.859 8 N -0.536 5.536 9 C 0.017 3.983 10 C 0.051 3.949 11 C 0.122 3.878 12 N -0.610 5.610 13 C 0.071 3.929 14 C 0.530 3.470 15 O -0.563 6.563 16 C -0.124 4.124 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.257 1.257 26 O -0.204 6.204 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.098 0.902 39 H 0.022 0.978 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.915 1.943 -8.281 30.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.018 4.018 3 N -0.248 5.248 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.100 4.100 7 C 0.013 3.987 8 N -0.261 5.261 9 C -0.131 4.131 10 C -0.078 4.078 11 C -0.001 4.001 12 N -0.344 5.344 13 C -0.071 4.071 14 C 0.318 3.682 15 O -0.441 6.441 16 C -0.275 4.275 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.181 1.181 26 O -0.092 6.092 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.116 0.884 39 H 0.040 0.960 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.997 4.127 -7.856 30.324 hybrid contribution 1.614 -1.992 -0.409 2.596 sum -27.383 2.135 -8.266 28.683 Atomic orbital electron populations 1.20530 0.78157 1.06488 1.06083 1.27229 0.97967 0.78096 0.98514 1.70369 1.02246 1.31477 1.20680 1.21855 0.93796 0.92741 1.05476 1.20417 0.91647 0.98034 1.03752 1.23082 0.83819 0.94476 1.08670 1.20445 0.89140 0.98937 0.90137 1.61890 1.39682 1.09617 1.14903 1.22653 0.99103 0.91734 0.99609 1.22395 0.92223 0.95093 0.98087 1.21442 0.90947 0.91409 0.96268 1.47817 1.04895 1.09246 1.72421 1.22133 1.03194 0.78565 1.03214 1.20164 0.83746 0.88965 0.75341 1.90674 1.81932 1.21078 1.50426 1.23380 0.96838 1.00922 1.06341 1.85572 0.97081 1.14321 1.95644 1.23200 0.94629 0.93564 1.57950 0.89874 1.26124 0.98744 1.00505 0.93750 1.70180 1.12677 1.24594 1.47321 0.84960 0.77130 0.77320 0.78614 1.19307 1.20372 1.18119 1.84382 1.16753 1.38037 1.69994 0.87415 0.87171 0.87382 0.89784 0.90443 0.89794 0.87344 0.90279 0.91048 0.91129 0.94830 0.88402 0.95986 0.91932 0.87174 0.90974 0.90676 0.88051 0.87412 0.87435 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 71.24 0.75 0.31 16 2 C 0.19 3.55 8.34 88.34 0.74 4.28 16 3 N -0.52 -12.01 11.29 -291.98 -3.30 -15.31 16 4 C -0.02 -0.41 6.18 41.26 0.25 -0.15 16 5 C -0.08 -1.42 9.50 71.24 0.68 -0.74 16 6 C -0.05 -0.98 6.28 24.79 0.16 -0.82 16 7 C 0.14 2.45 5.19 85.55 0.44 2.89 16 8 N -0.54 -10.45 4.75 -927.02 -4.41 -14.86 16 9 C 0.02 0.35 7.78 127.69 0.99 1.34 16 10 C 0.05 1.03 5.28 86.31 0.46 1.49 16 11 C 0.12 2.71 5.38 86.38 0.46 3.18 16 12 N -0.61 -15.38 2.87 -846.76 -2.43 -17.81 16 13 C 0.07 1.14 10.29 127.77 1.31 2.45 16 14 C 0.53 19.47 7.69 87.66 0.67 20.14 16 15 O -0.56 -25.74 15.44 -3.02 -0.05 -25.79 16 16 C -0.12 -4.86 4.71 71.24 0.34 -4.52 16 17 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 18 C -0.55 -30.92 9.50 67.96 0.65 -30.27 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.77 5.49 84.86 0.47 1.23 16 21 N -0.91 -55.79 13.22 21.65 0.29 -55.51 16 22 Si 1.00 43.21 29.55 68.60 2.03 45.24 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 26 O -0.20 -4.32 10.78 -3.73 -0.04 -4.36 16 27 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.08 1.38 4.63 -2.39 -0.01 1.37 16 33 H 0.11 1.57 7.93 -2.39 -0.02 1.55 16 34 H 0.08 1.27 7.78 -2.39 -0.02 1.25 16 35 H 0.07 1.47 5.65 -2.39 -0.01 1.46 16 36 H 0.07 1.56 6.30 -2.38 -0.02 1.55 16 37 H 0.03 0.71 7.08 -2.39 -0.02 0.70 16 38 H 0.10 1.60 7.93 -2.39 -0.02 1.58 16 39 H 0.02 0.57 8.12 -2.38 -0.02 0.55 16 40 H 0.06 1.71 5.75 -2.39 -0.01 1.70 16 41 H 0.11 1.86 7.89 -2.39 -0.02 1.84 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.27 6.44 -2.39 -0.02 1.25 16 44 H 0.10 1.05 7.89 -2.39 -0.02 1.03 16 45 H 0.11 3.83 7.40 -2.40 -0.02 3.81 16 46 H 0.11 3.81 8.11 -2.40 -0.02 3.79 16 47 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -81.25 395.80 0.27 -80.98 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.97 Total: 16.25 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 8.37 Total: 0.80 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -9.85 Total: -103.49 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.09 Total: -30.15 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -81.25 0.27 -80.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496657826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.118 kcal (2) G-P(sol) polarization free energy of solvation -81.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds