Wall clock time and date at job start Sat Apr 11 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 110.88795 * 2 1 4 4 N 1.46905 * 109.46651 * 303.87728 * 3 2 1 5 5 C 1.46900 * 110.99682 * 179.97438 * 4 3 2 6 6 H 1.09006 * 110.43665 * 34.30244 * 5 4 3 7 7 C 1.54632 * 110.48625 * 156.83686 * 5 4 3 8 8 C 1.54480 * 101.76267 * 93.88223 * 7 5 4 9 9 N 1.46763 * 105.47618 * 25.41633 * 8 7 5 10 10 C 1.34750 * 111.34950 * 343.01969 * 9 8 7 11 11 O 1.21275 * 125.12430 * 180.38316 * 10 9 8 12 12 C 1.55158 * 110.99987 * 123.87686 * 2 1 3 13 13 C 1.54318 * 102.94194 * 82.61245 * 12 2 1 14 14 N 1.47021 * 107.27468 * 22.19014 * 13 12 2 15 15 C 1.34774 * 125.65194 * 181.02225 * 14 13 12 16 16 O 1.21281 * 120.00138 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99738 * 0.02562 * 15 14 13 18 18 S 1.80996 * 109.47055 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00259 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00080 * 0.28240 * 19 18 17 21 21 C 1.38805 * 120.00285 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99709 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99953 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47228 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46793 * 120.00367 * 23 21 19 26 26 H 1.48500 * 109.47000 * 240.00460 * 23 21 19 27 27 C 1.47429 * 108.69859 * 1.28731 * 14 13 12 28 28 H 1.08999 * 109.47345 * 296.12934 * 1 2 3 29 29 H 1.09001 * 109.46653 * 56.12453 * 1 2 3 30 30 H 1.08995 * 109.46991 * 176.11748 * 1 2 3 31 31 H 1.08999 * 109.47706 * 63.87221 * 3 2 1 32 32 H 1.08997 * 109.47283 * 183.88080 * 3 2 1 33 33 H 1.00897 * 111.00139 * 56.05172 * 4 3 2 34 34 H 1.08997 * 110.97617 * 211.99903 * 7 5 4 35 35 H 1.08999 * 110.97044 * 335.76902 * 7 5 4 36 36 H 1.08997 * 110.24788 * 144.41938 * 8 7 5 37 37 H 1.09000 * 110.24583 * 266.42022 * 8 7 5 38 38 H 0.97003 * 124.35451 * 162.97887 * 9 8 7 39 39 H 1.09003 * 110.72223 * 324.24330 * 12 2 1 40 40 H 1.08999 * 110.87117 * 201.04836 * 12 2 1 41 41 H 1.09004 * 109.88307 * 262.77502 * 13 12 2 42 42 H 1.09004 * 109.88116 * 141.61204 * 13 12 2 43 43 H 1.09005 * 109.46991 * 60.00046 * 17 15 14 44 44 H 1.08994 * 109.47632 * 300.00284 * 17 15 14 45 45 H 0.97000 * 119.99481 * 179.97438 * 22 21 19 46 46 H 1.09006 * 110.36519 * 94.48212 * 27 14 13 47 47 H 1.08997 * 110.36452 * 216.80060 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5288 2.1621 -1.1499 5 6 2.0314 3.5421 -1.1822 6 1 3.0555 3.5829 -0.8109 7 6 1.9529 4.1133 -2.6170 8 6 0.5853 4.8314 -2.5956 9 7 0.3400 5.1648 -1.1876 10 6 1.1367 4.4507 -0.3683 11 8 1.1374 4.5236 0.8422 12 6 2.0861 -0.8074 1.2026 13 6 2.0294 -2.2642 0.6967 14 7 2.0153 -2.2158 -0.7727 15 6 1.9494 -3.2830 -1.5932 16 8 1.9446 -3.1241 -2.7955 17 6 1.8816 -4.6737 -1.0166 18 16 1.8016 -5.8814 -2.3623 19 6 1.7332 -7.3747 -1.4296 20 1 1.7431 -7.3382 -0.3502 21 6 1.6600 -8.5977 -2.0819 22 7 1.6423 -8.6420 -3.3973 23 14 1.5867 -10.1808 -1.0929 24 1 1.6202 -9.8609 0.3568 25 1 0.3298 -10.9051 -1.4107 26 1 2.7513 -11.0349 -1.4388 27 6 2.0917 -0.8069 -1.1999 28 1 -0.3634 0.4526 0.9226 29 1 -0.3633 0.5728 -0.8533 30 1 -0.3633 -1.0253 -0.0696 31 1 1.7823 1.9303 0.9226 32 1 3.1630 1.4034 -0.0696 33 1 0.5200 2.1452 -1.1430 34 1 2.7619 4.8204 -2.8003 35 1 1.9615 3.3127 -3.3566 36 1 0.6268 5.7397 -3.1966 37 1 -0.1952 4.1675 -2.9674 38 1 -0.3117 5.8164 -0.8848 39 1 1.4519 -0.6788 2.0798 40 1 3.1126 -0.5159 1.4247 41 1 1.1228 -2.7479 1.0603 42 1 2.9073 -2.8107 1.0412 43 1 0.9922 -4.7655 -0.3931 44 1 2.7694 -4.8603 -0.4126 45 1 1.5915 -9.4967 -3.8531 46 1 3.1261 -0.5260 -1.3980 47 1 1.4776 -0.6453 -2.0859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500317991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:16 Heat of formation + Delta-G solvation = -67.402657 kcal Electronic energy + Delta-G solvation = -27346.561904 eV Core-core repulsion = 23462.170712 eV Total energy + Delta-G solvation = -3884.391192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.98904 -40.03934 -37.90672 -36.91938 -35.49138 -32.84580 -32.40795 -30.54430 -29.57798 -29.22629 -27.48870 -26.63986 -25.49244 -24.67557 -22.74303 -22.24744 -20.93872 -19.34647 -19.22943 -17.89542 -17.60060 -16.94744 -16.62214 -16.35684 -16.11203 -15.09525 -14.86331 -14.78889 -14.71729 -14.49071 -14.28595 -14.05184 -13.83717 -13.69579 -13.62168 -13.22565 -12.89811 -12.61917 -12.45988 -12.40798 -12.26205 -11.97859 -11.90686 -11.71575 -11.64830 -11.06143 -11.04802 -10.99059 -10.88724 -10.83491 -10.73283 -10.65829 -9.77933 -9.63400 -9.33102 -9.05410 -8.84479 -8.39010 -8.19638 -6.47318 -6.19730 -3.89759 2.01425 2.83412 2.99349 3.14343 3.22828 3.28359 3.33039 3.55744 3.68313 3.83265 4.04695 4.22021 4.26875 4.39989 4.43625 4.50447 4.61067 4.92463 4.96352 5.01499 5.07130 5.08791 5.11274 5.15481 5.34335 5.37710 5.44005 5.46479 5.52902 5.57514 5.66820 5.73484 5.76888 5.82208 5.83277 5.98823 6.04150 6.12614 6.18756 6.23270 6.38711 6.47062 6.54002 6.76586 7.61967 7.71340 7.77178 8.37623 8.64273 9.25680 10.87776 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028540 B = 0.001962 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.831815 B =14271.168224 C =14858.744870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 C 0.070 3.930 4 N -0.657 5.657 5 C 0.056 3.944 6 H 0.113 0.887 7 C -0.127 4.127 8 C 0.097 3.903 9 N -0.732 5.732 10 C 0.487 3.513 11 O -0.530 6.530 12 C -0.121 4.121 13 C 0.104 3.896 14 N -0.627 5.627 15 C 0.548 3.452 16 O -0.516 6.516 17 C -0.146 4.146 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.130 3.870 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.345 0.655 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.408 0.592 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.267 0.733 46 H 0.065 0.935 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 28.762 6.612 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 C -0.059 4.059 4 N -0.290 5.290 5 C -0.058 4.058 6 H 0.131 0.869 7 C -0.165 4.165 8 C -0.027 4.027 9 N -0.389 5.389 10 C 0.270 3.730 11 O -0.405 6.405 12 C -0.160 4.160 13 C -0.020 4.020 14 N -0.364 5.364 15 C 0.336 3.664 16 O -0.391 6.391 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.007 3.993 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.105 0.895 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.247 0.753 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.409 28.504 4.768 28.903 hybrid contribution -0.906 -0.472 2.898 3.073 sum -1.315 28.032 7.667 29.091 Atomic orbital electron populations 1.21762 0.93476 1.02909 1.01473 1.21787 0.96164 0.93697 0.95747 1.22041 1.00046 0.92078 0.91721 1.60802 1.14271 1.09901 1.43989 1.22400 0.99753 0.87862 0.95790 0.86932 1.22722 0.96406 1.00778 0.96644 1.22172 0.98141 1.00634 0.81784 1.46376 1.41074 1.43205 1.08216 1.22104 0.82070 0.81202 0.87577 1.90766 1.69570 1.66997 1.13123 1.22715 1.02053 0.93739 0.97463 1.21953 1.01997 0.97150 0.80903 1.48515 1.75322 1.06144 1.06439 1.19975 0.75273 0.85015 0.86094 1.90705 1.48420 1.85631 1.14311 1.23503 1.04667 0.95543 1.05980 1.85385 1.96380 0.95959 1.05784 1.22904 1.58515 0.91931 0.94821 0.90920 1.24997 0.94612 0.98892 0.95150 1.70031 1.46936 1.26249 1.07065 0.86118 0.77889 0.81752 0.79745 1.19628 1.20589 1.20570 1.22132 1.00716 0.79573 0.96852 0.92532 0.92212 0.91629 0.93402 0.90041 0.83462 0.89535 0.87466 0.90086 0.90643 0.75349 0.89973 0.90309 0.91412 0.91341 0.89447 0.89405 0.92266 0.91670 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.26 37.16 0.31 -0.93 16 2 C -0.07 -0.64 0.73 -152.24 -0.11 -0.76 16 3 C 0.07 0.55 4.59 -3.82 -0.02 0.53 16 4 N -0.66 -4.67 6.10 -106.73 -0.65 -5.32 16 5 C 0.06 0.35 3.24 -67.72 -0.22 0.13 16 6 H 0.11 0.71 7.85 -51.93 -0.41 0.30 16 7 C -0.13 -0.49 6.89 -25.10 -0.17 -0.67 16 8 C 0.10 0.31 7.78 -3.12 -0.02 0.29 16 9 N -0.73 -3.94 6.25 -59.12 -0.37 -4.30 16 10 C 0.49 4.07 7.78 -10.71 -0.08 3.99 16 11 O -0.53 -6.70 17.83 5.56 0.10 -6.60 16 12 C -0.12 -1.01 5.91 -24.90 -0.15 -1.15 16 13 C 0.10 1.15 6.17 -3.07 -0.02 1.13 16 14 N -0.63 -9.21 3.31 -170.38 -0.56 -9.77 16 15 C 0.55 10.82 7.87 -10.99 -0.09 10.74 16 16 O -0.52 -12.21 16.12 5.56 0.09 -12.12 16 17 C -0.15 -3.07 5.35 36.01 0.19 -2.88 16 18 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 23 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.13 1.59 5.71 -2.41 -0.01 1.57 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 6.46 -51.93 -0.34 0.17 16 30 H 0.06 0.69 7.91 -51.93 -0.41 0.28 16 31 H 0.05 0.42 7.95 -51.93 -0.41 0.01 16 32 H 0.08 0.61 8.01 -51.93 -0.42 0.19 16 33 H 0.35 2.48 6.42 -39.29 -0.25 2.23 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.11 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.41 1.76 8.96 -40.82 -0.37 1.40 16 39 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 40 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.07 0.79 7.99 -51.93 -0.41 0.38 16 47 H 0.08 1.13 7.95 -51.93 -0.41 0.71 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -37.02 394.46 -9.76 -46.78 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.61 Total: -0.55 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -0.20 Total: -1.07 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.85 Total: -45.00 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.19 Total: -18.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.02 -9.76 -46.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500317991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.621 kcal (2) G-P(sol) polarization free energy of solvation -37.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds