Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 110.88795 * 2 1 4 4 N 1.46905 * 109.46651 * 303.87728 * 3 2 1 5 5 C 1.46900 * 110.99682 * 179.97438 * 4 3 2 6 6 H 1.09006 * 110.43665 * 34.30244 * 5 4 3 7 7 C 1.54632 * 110.48625 * 156.83686 * 5 4 3 8 8 C 1.54480 * 101.76267 * 93.88223 * 7 5 4 9 9 N 1.46763 * 105.47618 * 25.41633 * 8 7 5 10 10 C 1.34750 * 111.34950 * 343.01969 * 9 8 7 11 11 O 1.21275 * 125.12430 * 180.38316 * 10 9 8 12 12 C 1.55158 * 110.99987 * 123.87686 * 2 1 3 13 13 C 1.54318 * 102.94194 * 82.61245 * 12 2 1 14 14 N 1.47021 * 107.27468 * 22.19014 * 13 12 2 15 15 C 1.34774 * 125.65194 * 181.02225 * 14 13 12 16 16 O 1.21281 * 120.00138 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99738 * 0.02562 * 15 14 13 18 18 S 1.80996 * 109.47055 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00259 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00080 * 0.28240 * 19 18 17 21 21 C 1.38805 * 120.00285 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99709 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99953 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47228 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46793 * 120.00367 * 23 21 19 26 26 H 1.48500 * 109.47000 * 240.00460 * 23 21 19 27 27 C 1.47429 * 108.69859 * 1.28731 * 14 13 12 28 28 H 1.08999 * 109.47345 * 296.12934 * 1 2 3 29 29 H 1.09001 * 109.46653 * 56.12453 * 1 2 3 30 30 H 1.08995 * 109.46991 * 176.11748 * 1 2 3 31 31 H 1.08999 * 109.47706 * 63.87221 * 3 2 1 32 32 H 1.08997 * 109.47283 * 183.88080 * 3 2 1 33 33 H 1.00897 * 111.00139 * 56.05172 * 4 3 2 34 34 H 1.08997 * 110.97617 * 211.99903 * 7 5 4 35 35 H 1.08999 * 110.97044 * 335.76902 * 7 5 4 36 36 H 1.08997 * 110.24788 * 144.41938 * 8 7 5 37 37 H 1.09000 * 110.24583 * 266.42022 * 8 7 5 38 38 H 0.97003 * 124.35451 * 162.97887 * 9 8 7 39 39 H 1.09003 * 110.72223 * 324.24330 * 12 2 1 40 40 H 1.08999 * 110.87117 * 201.04836 * 12 2 1 41 41 H 1.09004 * 109.88307 * 262.77502 * 13 12 2 42 42 H 1.09004 * 109.88116 * 141.61204 * 13 12 2 43 43 H 1.09005 * 109.46991 * 60.00046 * 17 15 14 44 44 H 1.08994 * 109.47632 * 300.00284 * 17 15 14 45 45 H 0.97000 * 119.99481 * 179.97438 * 22 21 19 46 46 H 1.09006 * 110.36519 * 94.48212 * 27 14 13 47 47 H 1.08997 * 110.36452 * 216.80060 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5288 2.1621 -1.1499 5 6 2.0314 3.5421 -1.1822 6 1 3.0555 3.5829 -0.8109 7 6 1.9529 4.1133 -2.6170 8 6 0.5853 4.8314 -2.5956 9 7 0.3400 5.1648 -1.1876 10 6 1.1367 4.4507 -0.3683 11 8 1.1374 4.5236 0.8422 12 6 2.0861 -0.8074 1.2026 13 6 2.0294 -2.2642 0.6967 14 7 2.0153 -2.2158 -0.7727 15 6 1.9494 -3.2830 -1.5932 16 8 1.9446 -3.1241 -2.7955 17 6 1.8816 -4.6737 -1.0166 18 16 1.8016 -5.8814 -2.3623 19 6 1.7332 -7.3747 -1.4296 20 1 1.7431 -7.3382 -0.3502 21 6 1.6600 -8.5977 -2.0819 22 7 1.6423 -8.6420 -3.3973 23 14 1.5867 -10.1808 -1.0929 24 1 1.6202 -9.8609 0.3568 25 1 0.3298 -10.9051 -1.4107 26 1 2.7513 -11.0349 -1.4388 27 6 2.0917 -0.8069 -1.1999 28 1 -0.3634 0.4526 0.9226 29 1 -0.3633 0.5728 -0.8533 30 1 -0.3633 -1.0253 -0.0696 31 1 1.7823 1.9303 0.9226 32 1 3.1630 1.4034 -0.0696 33 1 0.5200 2.1452 -1.1430 34 1 2.7619 4.8204 -2.8003 35 1 1.9615 3.3127 -3.3566 36 1 0.6268 5.7397 -3.1966 37 1 -0.1952 4.1675 -2.9674 38 1 -0.3117 5.8164 -0.8848 39 1 1.4519 -0.6788 2.0798 40 1 3.1126 -0.5159 1.4247 41 1 1.1228 -2.7479 1.0603 42 1 2.9073 -2.8107 1.0412 43 1 0.9922 -4.7655 -0.3931 44 1 2.7694 -4.8603 -0.4126 45 1 1.5915 -9.4967 -3.8531 46 1 3.1261 -0.5260 -1.3980 47 1 1.4776 -0.6453 -2.0859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500317991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = -96.256995 kcal Electronic energy + Delta-G solvation = -27347.813122 eV Core-core repulsion = 23462.170712 eV Total energy + Delta-G solvation = -3885.642410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.60376 -41.11642 -39.16317 -37.57760 -36.27494 -34.58978 -33.78585 -31.28654 -30.84316 -30.13270 -28.09739 -27.78199 -27.34715 -25.60226 -23.63890 -22.64722 -21.47813 -20.69753 -20.18408 -19.45826 -18.44293 -17.98677 -17.44429 -17.37060 -16.95898 -16.88624 -16.44898 -15.92600 -15.56530 -15.45330 -15.23036 -14.92607 -14.78452 -14.56346 -14.47509 -14.41863 -13.89189 -13.72710 -13.57630 -13.36002 -13.22960 -13.14786 -12.92683 -12.84965 -12.69467 -12.60175 -12.38797 -12.14980 -11.85271 -11.70421 -11.58001 -11.54300 -11.36174 -11.15948 -10.93373 -10.28006 -10.10094 -9.63542 -9.43965 -8.67862 -8.34920 -6.13326 1.25047 1.39683 1.41460 1.45529 1.57477 1.59279 2.13719 2.27228 2.39357 2.98098 2.99083 3.24903 3.35205 3.49326 3.56778 3.67731 3.79197 3.91602 4.10942 4.18510 4.20504 4.24858 4.27381 4.33945 4.44889 4.57936 4.66141 4.68115 4.70160 4.80754 4.82573 4.91703 4.92996 5.04179 5.08700 5.14001 5.17068 5.21467 5.33334 5.41719 5.44630 5.77191 5.84292 5.97459 6.18792 6.19901 6.43573 7.06186 7.14869 7.16557 8.74673 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028540 B = 0.001962 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.831815 B =14271.168224 C =14858.744870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 C 0.078 3.922 4 N -0.658 5.658 5 C 0.056 3.944 6 H 0.113 0.887 7 C -0.121 4.121 8 C 0.096 3.904 9 N -0.722 5.722 10 C 0.480 3.520 11 O -0.580 6.580 12 C -0.112 4.112 13 C 0.092 3.908 14 N -0.616 5.616 15 C 0.545 3.455 16 O -0.567 6.567 17 C -0.119 4.119 18 S -0.150 6.150 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.273 1.273 27 C 0.128 3.872 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.345 0.655 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.413 0.587 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.271 0.729 46 H 0.069 0.931 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 29.740 8.522 30.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.061 4.061 3 C -0.052 4.052 4 N -0.291 5.291 5 C -0.057 4.057 6 H 0.131 0.869 7 C -0.159 4.159 8 C -0.028 4.028 9 N -0.377 5.377 10 C 0.265 3.735 11 O -0.459 6.459 12 C -0.150 4.150 13 C -0.030 4.030 14 N -0.351 5.351 15 C 0.333 3.667 16 O -0.446 6.446 17 C -0.271 4.271 18 S 0.077 5.923 19 C -0.693 4.693 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.822 3.178 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.198 1.198 27 C 0.006 3.994 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.165 0.835 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.252 0.748 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.311 29.541 6.689 30.291 hybrid contribution -0.957 -0.612 2.303 2.568 sum -1.268 28.930 8.992 30.321 Atomic orbital electron populations 1.21742 0.93420 1.01907 1.02335 1.21697 0.96069 0.93988 0.94345 1.21949 1.00360 0.91061 0.91782 1.60863 1.14271 1.10435 1.43524 1.22467 0.99235 0.87020 0.96985 0.86894 1.22736 0.97328 1.00998 0.94822 1.22360 0.97915 1.01863 0.80613 1.46442 1.40112 1.42234 1.08909 1.22451 0.82501 0.81472 0.87107 1.90732 1.71228 1.68765 1.15218 1.22744 1.03533 0.91242 0.97490 1.22302 1.02809 0.99582 0.78289 1.48458 1.72712 1.05979 1.07926 1.19724 0.75557 0.85614 0.85782 1.90681 1.51273 1.86269 1.16365 1.23299 1.06124 0.94384 1.03245 1.85563 1.96715 0.99004 1.11002 1.23216 1.58655 0.92234 0.95162 0.90011 1.26150 0.93753 1.03006 0.96322 1.70191 1.47915 1.27447 1.09168 0.84888 0.78121 0.76326 0.78497 1.18047 1.19871 1.19843 1.22283 1.00882 0.78482 0.97756 0.91201 0.91990 0.93409 0.93874 0.89369 0.83536 0.88083 0.87457 0.87700 0.90021 0.74770 0.87941 0.88708 0.90770 0.90353 0.87840 0.87736 0.91959 0.91240 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.26 71.98 0.59 -1.64 16 2 C -0.06 -0.95 0.73 -50.71 -0.04 -0.99 16 3 C 0.08 1.08 4.59 86.30 0.40 1.47 16 4 N -0.66 -8.51 6.10 -491.59 -3.00 -11.51 16 5 C 0.06 0.63 3.24 44.91 0.15 0.78 16 6 H 0.11 1.27 7.85 -2.38 -0.02 1.25 16 7 C -0.12 -0.69 6.89 31.65 0.22 -0.47 16 8 C 0.10 0.40 7.78 86.83 0.68 1.07 16 9 N -0.72 -6.68 6.25 -459.37 -2.87 -9.55 16 10 C 0.48 7.61 7.78 87.85 0.68 8.29 16 11 O -0.58 -14.61 17.83 -3.01 -0.05 -14.67 16 12 C -0.11 -1.53 5.91 31.78 0.19 -1.34 16 13 C 0.09 1.83 6.17 86.73 0.53 2.37 16 14 N -0.62 -17.60 3.31 -811.36 -2.69 -20.29 16 15 C 0.55 21.74 7.87 87.66 0.69 22.43 16 16 O -0.57 -27.81 16.12 -3.03 -0.05 -27.86 16 17 C -0.12 -5.01 5.35 71.24 0.38 -4.62 16 18 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 19 C -0.54 -31.59 9.50 67.96 0.65 -30.94 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 23 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 C 0.13 3.03 5.71 86.93 0.50 3.53 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.98 6.46 -2.39 -0.02 0.96 16 30 H 0.05 0.96 7.91 -2.39 -0.02 0.94 16 31 H 0.04 0.68 7.95 -2.39 -0.02 0.66 16 32 H 0.09 1.13 8.01 -2.39 -0.02 1.11 16 33 H 0.34 4.54 6.42 -89.70 -0.58 3.97 16 34 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.11 0.68 8.08 -2.39 -0.02 0.66 16 36 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.41 3.02 8.96 -92.71 -0.83 2.19 16 39 H 0.10 1.08 8.05 -2.39 -0.02 1.06 16 40 H 0.09 1.06 8.04 -2.39 -0.02 1.04 16 41 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 44 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.07 1.61 7.99 -2.38 -0.02 1.60 16 47 H 0.06 1.73 7.95 -2.39 -0.02 1.71 16 Total: -1.00 -83.86 394.46 -1.86 -85.72 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -0.42 Total: 16.90 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 6.08 Total: 1.11 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -8.27 Total: -97.49 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.10 Total: -42.52 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -83.86 -1.86 -85.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500317991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.538 kcal (2) G-P(sol) polarization free energy of solvation -83.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds