Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 110.29244 * 2 1 4 4 N 1.46904 * 109.47548 * 60.67461 * 3 2 1 5 5 C 1.46901 * 111.00153 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.43127 * 36.09172 * 5 4 3 7 7 C 1.54628 * 110.48380 * 158.77439 * 5 4 3 8 8 C 1.54479 * 101.76467 * 143.47695 * 7 5 4 9 9 N 1.46769 * 105.47281 * 334.58277 * 8 7 5 10 10 C 1.34416 * 111.29916 * 17.01807 * 9 8 7 11 11 O 1.21277 * 124.94195 * 179.63068 * 10 9 8 12 12 C 1.54617 * 110.41611 * 237.80038 * 2 1 3 13 13 C 1.54593 * 102.91463 * 262.76776 * 12 2 1 14 14 N 1.48116 * 103.42143 * 322.86573 * 13 12 2 15 15 C 1.34775 * 127.03668 * 219.28455 * 14 13 12 16 16 O 1.21282 * 120.00577 * 179.68534 * 15 14 13 17 17 C 1.50703 * 119.99768 * 359.69117 * 15 14 13 18 18 S 1.81000 * 109.47038 * 179.97438 * 17 15 14 19 19 C 1.76209 * 99.99875 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99972 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99599 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99397 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00627 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00578 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00328 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00039 * 23 21 19 27 27 C 1.47490 * 105.93488 * 39.02536 * 14 13 12 28 28 H 1.08995 * 109.47383 * 299.32358 * 1 2 3 29 29 H 1.08998 * 109.46794 * 59.32271 * 1 2 3 30 30 H 1.08998 * 109.47360 * 179.31581 * 1 2 3 31 31 H 1.09001 * 109.47386 * 180.67664 * 3 2 1 32 32 H 1.09001 * 109.47057 * 300.67535 * 3 2 1 33 33 H 1.00896 * 111.00074 * 303.96089 * 4 3 2 34 34 H 1.08999 * 110.96713 * 261.59792 * 7 5 4 35 35 H 1.09001 * 110.96778 * 25.35716 * 7 5 4 36 36 H 1.09002 * 110.24360 * 215.58417 * 8 7 5 37 37 H 1.09002 * 110.24658 * 93.58506 * 8 7 5 38 38 H 0.96999 * 124.34582 * 197.04059 * 9 8 7 39 39 H 1.09003 * 110.73926 * 21.25693 * 12 2 1 40 40 H 1.09006 * 110.74021 * 144.39448 * 12 2 1 41 41 H 1.08994 * 110.61889 * 204.35536 * 13 12 2 42 42 H 1.08994 * 110.54648 * 81.34714 * 13 12 2 43 43 H 1.09000 * 109.47235 * 59.99532 * 17 15 14 44 44 H 1.09005 * 109.46867 * 299.99572 * 17 15 14 45 45 H 0.97005 * 119.99723 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.91164 * 94.13618 * 27 14 13 47 47 H 1.09002 * 109.91548 * 215.41780 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 7 1.5942 2.1296 1.2075 5 6 2.0851 3.5138 1.2413 6 1 2.1066 3.9345 0.2361 7 6 1.2046 4.3775 2.1739 8 6 2.2509 5.3161 2.8147 9 7 3.5229 4.5869 2.7496 10 6 3.4600 3.5729 1.8696 11 8 4.3724 2.8150 1.6166 12 6 2.0694 -0.7722 -1.2262 13 6 2.3677 -2.1744 -0.6476 14 7 2.8824 -1.8836 0.7104 15 6 3.8945 -2.5069 1.3457 16 8 4.2158 -2.1588 2.4621 17 6 4.6272 -3.6364 0.6685 18 16 5.9218 -4.2610 1.7685 19 6 6.5961 -5.5349 0.7550 20 1 6.1863 -5.7171 -0.2275 21 6 7.6532 -6.3050 1.2197 22 7 8.1573 -7.2563 0.4623 23 14 8.3616 -5.9904 2.9193 24 1 9.4565 -4.9920 2.8223 25 1 7.2947 -5.4700 3.8116 26 1 8.8966 -7.2593 3.4752 27 6 2.0649 -0.7681 1.2230 28 1 -0.3634 0.5033 0.8959 29 1 -0.3633 0.5243 -0.8838 30 1 -0.3634 -1.0276 -0.0123 31 1 3.1504 1.4194 -0.0121 32 1 1.6949 1.9576 -0.8839 33 1 0.5879 2.1013 1.2750 34 1 0.4701 4.9446 1.6020 35 1 0.7172 3.7623 2.9303 36 1 1.9871 5.5226 3.8520 37 1 2.3197 6.2458 2.2499 38 1 4.3080 4.8082 3.2746 39 1 1.3136 -0.8288 -2.0097 40 1 2.9808 -0.3086 -1.6039 41 1 3.1243 -2.6830 -1.2449 42 1 1.4552 -2.7681 -0.5942 43 1 5.0790 -3.2745 -0.2550 44 1 3.9258 -4.4389 0.4398 45 1 8.8964 -7.7942 0.7869 46 1 1.2330 -1.1568 1.8102 47 1 2.6793 -0.1086 1.8360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500317993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = -62.472715 kcal Electronic energy + Delta-G solvation = -27725.943111 eV Core-core repulsion = 23841.765698 eV Total energy + Delta-G solvation = -3884.177413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74352 -39.96968 -37.93858 -36.66068 -35.55957 -32.97206 -32.36778 -30.42530 -29.57511 -29.27441 -27.40913 -26.32719 -25.55053 -24.80835 -22.83793 -22.49219 -20.37505 -19.31076 -19.18267 -17.70699 -17.50388 -17.15948 -16.61356 -16.09883 -15.68877 -15.46375 -15.08452 -14.83342 -14.64885 -14.40444 -14.07681 -13.93719 -13.77687 -13.61888 -13.49630 -13.03541 -12.96273 -12.86167 -12.73401 -12.38447 -12.23068 -12.06704 -11.89956 -11.68595 -11.56690 -11.19659 -11.03048 -10.94078 -10.82279 -10.72882 -10.49725 -10.19128 -9.78387 -9.43592 -9.33685 -8.93214 -8.78490 -8.43353 -8.39539 -6.82899 -6.22319 -3.92843 2.36878 2.82025 3.00698 3.13148 3.32225 3.40311 3.57966 3.68735 3.70472 3.87740 4.01325 4.31925 4.40521 4.43622 4.45198 4.55178 4.63355 4.80338 4.83489 4.99901 5.01661 5.04977 5.14876 5.16977 5.19137 5.24620 5.30087 5.39808 5.46218 5.59106 5.63648 5.65690 5.71916 5.80068 5.85074 5.96840 6.10976 6.11665 6.21154 6.41731 6.50880 6.56798 6.72380 6.95929 7.81019 8.00977 8.04956 8.48173 8.63409 9.24324 10.86919 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.002583 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.724269 B =10836.618305 C =12192.654365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 C 0.071 3.929 4 N -0.667 5.667 5 C 0.054 3.946 6 H 0.081 0.919 7 C -0.136 4.136 8 C 0.105 3.895 9 N -0.737 5.737 10 C 0.525 3.475 11 O -0.510 6.510 12 C -0.125 4.125 13 C 0.100 3.900 14 N -0.627 5.627 15 C 0.549 3.451 16 O -0.516 6.516 17 C -0.116 4.116 18 S -0.143 6.143 19 C -0.519 4.519 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.882 5.882 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.235 1.235 26 H -0.275 1.275 27 C 0.124 3.876 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.034 0.966 33 H 0.347 0.653 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.411 0.589 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.270 0.730 46 H 0.059 0.941 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.963 27.079 -2.222 34.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 C -0.058 4.058 4 N -0.301 5.301 5 C -0.060 4.060 6 H 0.099 0.901 7 C -0.174 4.174 8 C -0.020 4.020 9 N -0.395 5.395 10 C 0.309 3.691 11 O -0.382 6.382 12 C -0.164 4.164 13 C -0.023 4.023 14 N -0.364 5.364 15 C 0.337 3.663 16 O -0.390 6.390 17 C -0.267 4.267 18 S 0.084 5.916 19 C -0.666 4.666 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.519 5.519 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.159 1.159 26 H -0.200 1.200 27 C 0.001 3.999 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.168 0.832 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.250 0.750 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.370 26.695 -0.341 33.581 hybrid contribution -0.199 0.114 -1.202 1.224 sum -20.569 26.809 -1.543 33.825 Atomic orbital electron populations 1.21892 0.93646 1.02545 1.01609 1.21484 0.95669 0.94444 0.95744 1.22185 1.01904 0.92371 0.89347 1.60224 1.16280 1.12300 1.41342 1.22158 0.94205 0.90414 0.99191 0.90119 1.22834 0.97404 0.97778 0.99417 1.21977 0.83123 0.94906 1.01988 1.46151 1.15794 1.33103 1.44443 1.20720 0.89662 0.79530 0.79148 1.90810 1.42715 1.41860 1.62859 1.22757 1.01782 0.95319 0.96549 1.22426 0.99520 0.96766 0.83622 1.48768 1.34226 1.35842 1.17545 1.19908 0.78153 0.82562 0.85646 1.90711 1.64595 1.64812 1.18914 1.23243 1.01593 0.98374 1.03456 1.84814 1.38641 1.43562 1.24614 1.22324 1.21140 1.18477 1.04682 0.89430 1.24708 0.95163 0.93695 0.97775 1.69947 1.24954 1.20011 1.36966 0.86732 0.81618 0.78614 0.84904 1.19207 1.15874 1.20003 1.21969 0.94618 0.88090 0.95200 0.92141 0.92460 0.91890 0.89227 0.94786 0.83225 0.89111 0.88771 0.90078 0.91084 0.75007 0.89967 0.90459 0.89782 0.91068 0.88712 0.88681 0.92018 0.92229 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 7.88 37.16 0.29 -0.58 16 2 C -0.07 -0.66 0.76 -153.14 -0.12 -0.77 16 3 C 0.07 0.65 4.19 -3.83 -0.02 0.64 16 4 N -0.67 -5.46 5.72 -106.74 -0.61 -6.07 16 5 C 0.05 0.39 3.24 -67.72 -0.22 0.17 16 6 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 7 C -0.14 -0.49 6.62 -25.10 -0.17 -0.66 16 8 C 0.11 0.39 7.78 -3.12 -0.02 0.36 16 9 N -0.74 -5.59 6.24 -59.20 -0.37 -5.96 16 10 C 0.53 5.93 8.05 -10.86 -0.09 5.84 16 11 O -0.51 -8.61 16.95 5.56 0.09 -8.52 16 12 C -0.13 -1.12 6.16 -25.04 -0.15 -1.27 16 13 C 0.10 1.13 6.93 -2.32 -0.02 1.12 16 14 N -0.63 -9.84 3.29 -169.98 -0.56 -10.40 16 15 C 0.55 11.33 7.91 -10.98 -0.09 11.24 16 16 O -0.52 -12.75 16.20 5.56 0.09 -12.66 16 17 C -0.12 -2.48 5.09 36.01 0.18 -2.30 16 18 S -0.14 -3.86 18.55 -107.50 -1.99 -5.86 16 19 C -0.52 -15.53 10.04 30.94 0.31 -15.22 16 20 H 0.09 2.72 8.03 -52.49 -0.42 2.29 16 21 C 0.09 2.87 5.50 -17.43 -0.10 2.78 16 22 N -0.88 -27.33 13.97 55.49 0.78 -26.55 16 23 Si 0.86 22.66 27.74 -169.99 -4.72 17.95 16 24 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.23 -6.23 6.74 56.52 0.38 -5.85 16 26 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.12 1.67 6.06 -2.97 -0.02 1.65 16 28 H 0.06 0.34 6.69 -51.93 -0.35 -0.01 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 1.17 7.12 -51.93 -0.37 0.80 16 32 H 0.03 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.35 1.97 6.62 -39.29 -0.26 1.71 16 34 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 35 H 0.09 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 38 H 0.41 2.81 8.96 -40.82 -0.37 2.44 16 39 H 0.08 0.54 7.86 -51.93 -0.41 0.13 16 40 H 0.08 0.75 7.86 -51.93 -0.41 0.35 16 41 H 0.08 0.96 7.23 -51.93 -0.38 0.58 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.91 7.90 -51.92 -0.41 1.50 16 44 H 0.09 1.89 8.14 -51.91 -0.42 1.46 16 45 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.06 0.76 7.68 -51.93 -0.40 0.37 16 47 H 0.09 1.51 7.32 -51.93 -0.38 1.13 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -39.70 388.42 -9.16 -48.86 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.51 Total: 0.36 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.21 Total: 3.00 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.76 Total: -48.98 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.18 Total: -21.18 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.72 Total: 17.95 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -1.99 Total: -5.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.70 -9.16 -48.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500317993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.613 kcal (2) G-P(sol) polarization free energy of solvation -39.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds