Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 110.29244 * 2 1 4 4 N 1.46904 * 109.47548 * 60.67461 * 3 2 1 5 5 C 1.46901 * 111.00153 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.43127 * 36.09172 * 5 4 3 7 7 C 1.54628 * 110.48380 * 158.77439 * 5 4 3 8 8 C 1.54479 * 101.76467 * 143.47695 * 7 5 4 9 9 N 1.46769 * 105.47281 * 334.58277 * 8 7 5 10 10 C 1.34416 * 111.29916 * 17.01807 * 9 8 7 11 11 O 1.21277 * 124.94195 * 179.63068 * 10 9 8 12 12 C 1.54617 * 110.41611 * 237.80038 * 2 1 3 13 13 C 1.54593 * 102.91463 * 262.76776 * 12 2 1 14 14 N 1.48116 * 103.42143 * 322.86573 * 13 12 2 15 15 C 1.34775 * 127.03668 * 219.28455 * 14 13 12 16 16 O 1.21282 * 120.00577 * 179.68534 * 15 14 13 17 17 C 1.50703 * 119.99768 * 359.69117 * 15 14 13 18 18 S 1.81000 * 109.47038 * 179.97438 * 17 15 14 19 19 C 1.76209 * 99.99875 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99972 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99599 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99397 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00627 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00578 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00328 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00039 * 23 21 19 27 27 C 1.47490 * 105.93488 * 39.02536 * 14 13 12 28 28 H 1.08995 * 109.47383 * 299.32358 * 1 2 3 29 29 H 1.08998 * 109.46794 * 59.32271 * 1 2 3 30 30 H 1.08998 * 109.47360 * 179.31581 * 1 2 3 31 31 H 1.09001 * 109.47386 * 180.67664 * 3 2 1 32 32 H 1.09001 * 109.47057 * 300.67535 * 3 2 1 33 33 H 1.00896 * 111.00074 * 303.96089 * 4 3 2 34 34 H 1.08999 * 110.96713 * 261.59792 * 7 5 4 35 35 H 1.09001 * 110.96778 * 25.35716 * 7 5 4 36 36 H 1.09002 * 110.24360 * 215.58417 * 8 7 5 37 37 H 1.09002 * 110.24658 * 93.58506 * 8 7 5 38 38 H 0.96999 * 124.34582 * 197.04059 * 9 8 7 39 39 H 1.09003 * 110.73926 * 21.25693 * 12 2 1 40 40 H 1.09006 * 110.74021 * 144.39448 * 12 2 1 41 41 H 1.08994 * 110.61889 * 204.35536 * 13 12 2 42 42 H 1.08994 * 110.54648 * 81.34714 * 13 12 2 43 43 H 1.09000 * 109.47235 * 59.99532 * 17 15 14 44 44 H 1.09005 * 109.46867 * 299.99572 * 17 15 14 45 45 H 0.97005 * 119.99723 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.91164 * 94.13618 * 27 14 13 47 47 H 1.09002 * 109.91548 * 215.41780 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 7 1.5942 2.1296 1.2075 5 6 2.0851 3.5138 1.2413 6 1 2.1066 3.9345 0.2361 7 6 1.2046 4.3775 2.1739 8 6 2.2509 5.3161 2.8147 9 7 3.5229 4.5869 2.7496 10 6 3.4600 3.5729 1.8696 11 8 4.3724 2.8150 1.6166 12 6 2.0694 -0.7722 -1.2262 13 6 2.3677 -2.1744 -0.6476 14 7 2.8824 -1.8836 0.7104 15 6 3.8945 -2.5069 1.3457 16 8 4.2158 -2.1588 2.4621 17 6 4.6272 -3.6364 0.6685 18 16 5.9218 -4.2610 1.7685 19 6 6.5961 -5.5349 0.7550 20 1 6.1863 -5.7171 -0.2275 21 6 7.6532 -6.3050 1.2197 22 7 8.1573 -7.2563 0.4623 23 14 8.3616 -5.9904 2.9193 24 1 9.4565 -4.9920 2.8223 25 1 7.2947 -5.4700 3.8116 26 1 8.8966 -7.2593 3.4752 27 6 2.0649 -0.7681 1.2230 28 1 -0.3634 0.5033 0.8959 29 1 -0.3633 0.5243 -0.8838 30 1 -0.3634 -1.0276 -0.0123 31 1 3.1504 1.4194 -0.0121 32 1 1.6949 1.9576 -0.8839 33 1 0.5879 2.1013 1.2750 34 1 0.4701 4.9446 1.6020 35 1 0.7172 3.7623 2.9303 36 1 1.9871 5.5226 3.8520 37 1 2.3197 6.2458 2.2499 38 1 4.3080 4.8082 3.2746 39 1 1.3136 -0.8288 -2.0097 40 1 2.9808 -0.3086 -1.6039 41 1 3.1243 -2.6830 -1.2449 42 1 1.4552 -2.7681 -0.5942 43 1 5.0790 -3.2745 -0.2550 44 1 3.9258 -4.4389 0.4398 45 1 8.8964 -7.7942 0.7869 46 1 1.2330 -1.1568 1.8102 47 1 2.6793 -0.1086 1.8360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500317993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = -95.171768 kcal Electronic energy + Delta-G solvation = -27727.361049 eV Core-core repulsion = 23841.765698 eV Total energy + Delta-G solvation = -3885.595351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.50643 -41.06447 -39.25252 -37.49395 -36.41620 -34.70296 -33.94458 -31.29778 -30.91465 -30.10866 -27.95267 -27.92763 -27.13177 -25.82960 -23.74137 -22.90658 -21.11055 -20.78284 -20.05951 -19.51897 -18.39107 -18.09828 -17.71001 -17.24775 -17.15163 -16.60367 -16.39296 -16.15268 -15.80159 -15.64070 -15.12169 -14.93275 -14.86387 -14.68109 -14.55918 -14.31118 -14.00903 -13.62938 -13.58244 -13.39577 -13.38019 -13.15927 -13.05076 -12.90123 -12.69973 -12.64997 -12.56012 -12.10019 -11.91093 -11.78849 -11.51969 -11.43820 -11.20193 -11.04251 -10.99247 -10.57112 -10.06457 -9.75808 -9.39595 -9.04862 -8.54473 -6.25938 0.92393 1.28478 1.42608 1.50035 1.51311 1.57460 2.06199 2.22945 2.43440 2.65804 2.83380 3.10620 3.39643 3.45302 3.58913 3.63214 3.78117 3.87043 4.11836 4.13380 4.22010 4.26247 4.29731 4.35191 4.36526 4.47780 4.64906 4.67887 4.73592 4.76874 4.82641 4.92153 4.98863 5.04137 5.06404 5.12523 5.20526 5.26523 5.32550 5.54588 5.68388 5.84597 5.94504 6.03848 6.08000 6.41314 6.51302 6.90626 7.06332 7.29346 8.57936 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.002583 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.724269 B =10836.618305 C =12192.654365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.061 4.061 3 C 0.078 3.922 4 N -0.682 5.682 5 C 0.057 3.943 6 H 0.094 0.906 7 C -0.123 4.123 8 C 0.099 3.901 9 N -0.733 5.733 10 C 0.505 3.495 11 O -0.585 6.585 12 C -0.118 4.118 13 C 0.089 3.911 14 N -0.621 5.621 15 C 0.544 3.456 16 O -0.570 6.570 17 C -0.098 4.098 18 S -0.181 6.181 19 C -0.526 4.526 20 H 0.064 0.936 21 C 0.048 3.952 22 N -0.914 5.914 23 Si 0.912 3.088 24 H -0.264 1.264 25 H -0.240 1.240 26 H -0.254 1.254 27 C 0.123 3.877 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.364 0.636 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.410 0.590 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.278 0.722 46 H 0.069 0.931 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.587 29.194 -2.942 38.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.062 4.062 3 C -0.051 4.051 4 N -0.318 5.318 5 C -0.057 4.057 6 H 0.112 0.888 7 C -0.161 4.161 8 C -0.025 4.025 9 N -0.388 5.388 10 C 0.291 3.709 11 O -0.464 6.464 12 C -0.157 4.157 13 C -0.032 4.032 14 N -0.355 5.355 15 C 0.332 3.668 16 O -0.449 6.449 17 C -0.249 4.249 18 S 0.046 5.954 19 C -0.674 4.674 20 H 0.082 0.918 21 C -0.158 4.158 22 N -0.552 5.552 23 Si 0.734 3.266 24 H -0.189 1.189 25 H -0.164 1.164 26 H -0.178 1.178 27 C 0.000 4.000 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.188 0.812 34 H 0.145 0.855 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.249 0.751 39 H 0.140 0.860 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -24.086 28.863 -1.091 37.609 hybrid contribution 0.825 -0.418 -1.045 1.395 sum -23.260 28.445 -2.136 36.807 Atomic orbital electron populations 1.21867 0.90404 1.03357 1.03353 1.21467 0.97907 0.93493 0.93308 1.21995 0.99124 0.93042 0.90949 1.60048 1.17487 1.13096 1.41186 1.22208 0.92444 0.90643 1.00386 0.88809 1.22902 0.97231 0.97118 0.98817 1.22345 0.81066 0.95281 1.03761 1.46363 1.17360 1.32240 1.42861 1.21667 0.90658 0.79180 0.79437 1.90762 1.45346 1.44784 1.65528 1.22790 1.02486 0.93200 0.97190 1.22849 1.00392 0.98943 0.81058 1.48802 1.32483 1.35184 1.19076 1.19721 0.79216 0.82650 0.85181 1.90681 1.66644 1.66474 1.21149 1.23173 1.00118 0.99290 1.02296 1.84800 1.41222 1.42984 1.26418 1.22409 1.21455 1.19374 1.04156 0.91780 1.25520 0.95497 0.93514 1.01258 1.70009 1.25695 1.20807 1.38685 0.85897 0.80709 0.79307 0.80645 1.18889 1.16428 1.17755 1.22148 0.93567 0.87075 0.97180 0.91298 0.89838 0.91576 0.94048 0.92029 0.81232 0.85461 0.88771 0.88185 0.88724 0.75128 0.86012 0.91756 0.89918 0.88268 0.87519 0.86838 0.91259 0.91327 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 7.88 71.98 0.57 -0.52 16 2 C -0.06 -0.98 0.76 -51.29 -0.04 -1.02 16 3 C 0.08 1.36 4.19 86.30 0.36 1.73 16 4 N -0.68 -10.34 5.72 -491.61 -2.81 -13.15 16 5 C 0.06 0.74 3.24 44.91 0.15 0.89 16 6 H 0.09 0.98 7.87 -2.39 -0.02 0.96 16 7 C -0.12 -0.48 6.62 31.65 0.21 -0.27 16 8 C 0.10 0.47 7.78 86.83 0.68 1.14 16 9 N -0.73 -11.03 6.24 -459.80 -2.87 -13.90 16 10 C 0.50 11.92 8.05 87.90 0.71 12.63 16 11 O -0.59 -21.78 16.95 -3.02 -0.05 -21.84 16 12 C -0.12 -1.80 6.16 31.69 0.20 -1.61 16 13 C 0.09 1.84 6.93 86.61 0.60 2.44 16 14 N -0.62 -19.53 3.29 -810.09 -2.67 -22.20 16 15 C 0.54 23.13 7.91 87.66 0.69 23.82 16 16 O -0.57 -29.60 16.20 -3.04 -0.05 -29.65 16 17 C -0.10 -4.26 5.09 71.24 0.36 -3.90 16 18 S -0.18 -10.03 18.55 -56.49 -1.05 -11.07 16 19 C -0.53 -32.27 10.04 67.95 0.68 -31.58 16 20 H 0.06 4.10 8.03 -2.91 -0.02 4.08 16 21 C 0.05 2.92 5.50 84.86 0.47 3.39 16 22 N -0.91 -57.28 13.97 21.65 0.30 -56.98 16 23 Si 0.91 47.37 27.74 68.60 1.90 49.27 16 24 H -0.26 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.24 -12.61 6.74 99.48 0.67 -11.94 16 26 H -0.25 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.12 3.29 6.06 86.53 0.52 3.82 16 28 H 0.07 0.48 6.69 -2.39 -0.02 0.46 16 29 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 1.15 7.12 -2.39 -0.02 1.13 16 32 H 0.06 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.36 3.07 6.62 -89.70 -0.59 2.47 16 34 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.09 0.41 8.08 -2.39 -0.02 0.40 16 36 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.41 5.88 8.96 -92.71 -0.83 5.05 16 39 H 0.12 0.98 7.86 -2.39 -0.02 0.96 16 40 H 0.06 1.18 7.86 -2.38 -0.02 1.16 16 41 H 0.08 1.75 7.23 -2.39 -0.02 1.74 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.11 4.36 7.90 -2.40 -0.02 4.34 16 44 H 0.11 4.49 8.14 -2.39 -0.02 4.47 16 45 H 0.28 16.06 8.31 -92.70 -0.77 15.29 16 46 H 0.07 1.71 7.68 -2.39 -0.02 1.69 16 47 H 0.05 1.74 7.32 -2.39 -0.02 1.73 16 Total: -1.00 -94.23 388.42 -1.61 -95.84 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -0.47 Total: 12.71 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 6.15 Total: 10.96 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -8.04 Total: -106.22 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -0.10 Total: -51.49 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.90 Total: 49.27 kcal Atomic # 16 Polarization: -10.03 SS G_CDS: -1.05 Total: -11.07 kcal Total: -94.23 -1.61 -95.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500317993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.664 kcal (2) G-P(sol) polarization free energy of solvation -94.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds