Wall clock time and date at job start Sat Apr 11 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99872 * 2 1 4 4 C 1.53003 * 109.47370 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46745 * 64.99802 * 4 3 2 6 6 C 1.36940 * 120.00176 * 274.46382 * 5 4 3 7 7 H 1.07993 * 119.99887 * 146.17088 * 6 5 4 8 8 C 1.38817 * 119.99627 * 326.17388 * 6 5 4 9 9 N 1.31614 * 120.00391 * 335.30933 * 8 6 5 10 10 Si 1.86801 * 119.99588 * 155.31079 * 8 6 5 11 11 H 1.48504 * 109.47172 * 89.99509 * 10 8 6 12 12 H 1.48497 * 109.47307 * 209.99644 * 10 8 6 13 13 H 1.48501 * 109.47228 * 330.00201 * 10 8 6 14 14 C 1.46502 * 119.99800 * 94.47243 * 5 4 3 15 15 C 1.53001 * 109.46517 * 269.99489 * 14 5 4 16 16 N 1.46502 * 109.46517 * 179.97438 * 15 14 5 17 17 C 1.34780 * 119.99460 * 179.97438 * 16 15 14 18 18 O 1.21275 * 120.00281 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99505 * 180.02562 * 17 16 15 20 20 C 1.50707 * 109.46832 * 180.02562 * 19 17 16 21 21 S 1.76204 * 126.03443 * 269.68920 * 20 19 17 22 22 C 1.70978 * 90.28058 * 179.97438 * 21 20 19 23 23 C 1.50695 * 124.91708 * 180.02562 * 22 21 20 24 24 N 1.29035 * 110.16656 * 0.34761 * 22 21 20 25 25 C 1.31781 * 117.12269 * 359.72100 * 24 22 21 26 26 C 1.50705 * 122.74604 * 180.02562 * 25 24 22 27 27 H 1.08997 * 109.46787 * 300.00130 * 1 2 3 28 28 H 1.09002 * 109.46931 * 60.00396 * 1 2 3 29 29 H 1.08997 * 109.46882 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47575 * 59.99923 * 3 2 1 31 31 H 1.09001 * 109.47095 * 299.99567 * 3 2 1 32 32 H 1.09002 * 109.46924 * 304.99969 * 4 3 2 33 33 H 1.08998 * 109.47538 * 185.00093 * 4 3 2 34 34 H 0.96994 * 120.00067 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46717 * 149.99823 * 14 5 4 36 36 H 1.08994 * 109.47218 * 29.99427 * 14 5 4 37 37 H 1.08991 * 109.47152 * 60.00619 * 15 14 5 38 38 H 1.08994 * 109.47326 * 299.99871 * 15 14 5 39 39 H 0.97004 * 120.00373 * 0.02562 * 16 15 14 40 40 H 1.08994 * 109.46978 * 299.99801 * 19 17 16 41 41 H 1.08995 * 109.47540 * 60.00496 * 19 17 16 42 42 H 1.09000 * 109.47342 * 270.29107 * 23 22 21 43 43 H 1.09000 * 109.47139 * 30.29187 * 23 22 21 44 44 H 1.09003 * 109.47154 * 150.29236 * 23 22 21 45 45 H 1.09005 * 109.46733 * 270.00121 * 26 25 24 46 46 H 1.08996 * 109.47100 * 30.00424 * 26 25 24 47 47 H 1.08998 * 109.46779 * 150.00728 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0104 -0.8003 -1.3639 7 1 3.7921 -1.2691 -2.3120 8 6 4.3250 -1.5806 -0.2598 9 7 5.0415 -1.0742 0.7213 10 14 3.7316 -3.3494 -0.1665 11 1 4.7466 -4.2449 -0.7776 12 1 3.5281 -3.7289 1.2546 13 1 2.4486 -3.4805 -0.9026 14 6 4.3820 1.4029 -2.3815 15 6 3.1636 1.7014 -3.2575 16 7 3.5688 2.5408 -4.3878 17 6 2.6552 2.9315 -5.2985 18 8 1.4980 2.5878 -5.1825 19 6 3.0722 3.7945 -6.4615 20 6 1.8721 4.0886 -7.3243 21 16 1.3190 3.1269 -8.6933 22 6 0.0227 4.2133 -8.9435 23 6 -1.0149 4.0829 -10.0286 24 7 0.0653 5.1648 -8.0730 25 6 1.0434 5.1284 -7.1906 26 6 1.2133 6.1737 -6.1183 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 0.8427 33 1 3.9785 2.1766 0.0902 34 1 5.2616 -1.6196 1.4926 35 1 5.1341 0.8790 -2.9714 36 1 4.7993 2.3383 -2.0087 37 1 2.4116 2.2252 -2.6677 38 1 2.7463 0.7660 -3.6303 39 1 4.4946 2.8147 -4.4811 40 1 3.4891 4.7300 -6.0886 41 1 3.8245 3.2709 -7.0512 42 1 -0.6735 4.6049 -10.9225 43 1 -1.1683 3.0288 -10.2598 44 1 -1.9534 4.5206 -9.6884 45 1 1.8457 6.9787 -6.4927 46 1 0.2377 6.5753 -5.8446 47 1 1.6796 5.7229 -5.2423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508046667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:32 Heat of formation + Delta-G solvation = -19.761325 kcal Electronic energy + Delta-G solvation = -27516.110388 eV Core-core repulsion = 23633.785080 eV Total energy + Delta-G solvation = -3882.325308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.26892 -39.23552 -37.25140 -35.78033 -34.18567 -33.95591 -31.53505 -30.93312 -29.45483 -29.25279 -27.50456 -25.60474 -25.57515 -23.79336 -22.89252 -21.79764 -20.68686 -20.14573 -18.90026 -18.09771 -17.11017 -16.68779 -15.94208 -15.59128 -15.41215 -15.21365 -14.97059 -14.72604 -14.52546 -14.03011 -13.83202 -13.69553 -13.62418 -13.46536 -13.29855 -13.15308 -12.90009 -12.63480 -12.38516 -12.19905 -12.07827 -11.91758 -11.78491 -11.24380 -11.16962 -10.85652 -10.75368 -10.64703 -10.55343 -10.05364 -9.96805 -9.83639 -9.75538 -9.70677 -9.31306 -8.84415 -8.67094 -8.63911 -8.39135 -6.62625 -5.72229 -3.24875 0.55180 1.20954 1.61617 2.62449 2.75498 3.41212 3.46485 3.53027 3.61810 3.90816 4.48647 4.58872 4.75670 4.75848 4.81952 4.95935 5.09915 5.15166 5.21049 5.26289 5.37899 5.42775 5.53041 5.55024 5.65766 5.77029 5.79663 5.81389 5.85636 5.91960 6.10599 6.15434 6.18459 6.29210 6.30832 6.56530 6.63662 6.66947 6.68607 6.92539 7.62677 7.66742 7.69933 7.88637 8.13109 8.38690 8.55975 9.21069 9.87478 10.37724 11.29412 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.002385 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.407235 B =11739.227881 C =11799.462411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.047 3.953 4 C 0.137 3.863 5 N -0.571 5.571 6 C -0.245 4.245 7 H 0.058 0.942 8 C 0.023 3.977 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.292 1.292 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.138 3.862 15 C 0.096 3.904 16 N -0.723 5.723 17 C 0.507 3.493 18 O -0.532 6.532 19 C -0.065 4.065 20 C -0.203 4.203 21 S 0.129 5.871 22 C 0.042 3.958 23 C -0.076 4.076 24 N -0.471 5.471 25 C 0.075 3.925 26 C -0.078 4.078 27 H 0.025 0.975 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.028 0.972 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.253 0.747 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.397 0.603 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 13.535 -16.468 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.290 5.290 6 C -0.374 4.374 7 H 0.075 0.925 8 C -0.177 4.177 9 N -0.533 5.533 10 Si 0.728 3.272 11 H -0.219 1.219 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.010 3.990 15 C -0.029 4.029 16 N -0.375 5.375 17 C 0.291 3.709 18 O -0.408 6.408 19 C -0.107 4.107 20 C -0.324 4.324 21 S 0.386 5.614 22 C -0.236 4.236 23 C -0.136 4.136 24 N -0.187 5.187 25 C -0.057 4.057 26 C -0.137 4.137 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.231 0.769 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.537 12.484 -16.740 21.604 hybrid contribution -0.252 0.047 0.758 0.800 sum -5.789 12.531 -15.983 21.119 Atomic orbital electron populations 1.22636 0.84351 1.01443 0.98414 1.88232 1.16437 1.27414 1.94792 1.23452 0.98646 0.84329 0.96831 1.21166 0.87906 0.96532 0.93389 1.43588 1.74040 1.02391 1.08991 1.18796 1.41007 0.80701 0.96931 0.92471 1.24872 0.96873 0.97682 0.98246 1.69961 1.36298 1.36761 1.10282 0.86392 0.79079 0.84890 0.76854 1.21905 1.21694 1.20287 1.20998 0.92733 0.94767 0.90480 1.22486 1.00626 0.93653 0.86185 1.46102 1.11613 1.53084 1.26702 1.20372 0.86171 0.81033 0.83370 1.90733 1.18558 1.55907 1.75651 1.20075 0.94628 1.01773 0.94239 1.24938 1.04507 0.99995 1.02946 1.83863 1.23254 1.28909 1.25413 1.26874 1.01235 0.94556 1.00930 1.20420 0.95862 1.03304 0.94007 1.66114 1.23062 1.24994 1.04507 1.20057 0.90870 0.97392 0.97333 1.20349 1.03296 0.95508 0.94566 0.95608 0.95218 0.90794 0.95888 0.95357 0.87456 0.94113 0.93730 0.92680 0.94317 0.92410 0.91649 0.76943 0.86906 0.87703 0.89719 0.90124 0.89340 0.90713 0.90539 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -8.06 9.96 -35.23 -0.35 -8.41 16 3 C 0.05 0.97 6.28 37.16 0.23 1.20 16 4 C 0.14 3.11 5.83 -4.04 -0.02 3.09 16 5 N -0.57 -13.55 2.45 -173.23 -0.43 -13.98 16 6 C -0.25 -6.60 8.74 -15.06 -0.13 -6.73 16 7 H 0.06 1.57 7.94 -52.49 -0.42 1.15 16 8 C 0.02 0.63 4.95 -17.43 -0.09 0.55 16 9 N -0.89 -25.34 11.36 55.49 0.63 -24.71 16 10 Si 0.90 22.41 29.62 -169.99 -5.03 17.37 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 14 C 0.14 2.63 5.82 -4.04 -0.02 2.60 16 15 C 0.10 1.71 6.00 -4.04 -0.02 1.69 16 16 N -0.72 -9.81 5.56 -60.30 -0.33 -10.14 16 17 C 0.51 7.26 7.82 -10.98 -0.09 7.17 16 18 O -0.53 -10.19 16.03 5.56 0.09 -10.10 16 19 C -0.06 -0.65 5.63 -29.03 -0.16 -0.82 16 20 C -0.20 -2.48 5.08 -35.92 -0.18 -2.66 16 21 S 0.13 1.45 23.18 -107.50 -2.49 -1.04 16 22 C 0.04 0.48 7.39 -13.46 -0.10 0.38 16 23 C -0.08 -0.56 10.46 36.00 0.38 -0.18 16 24 N -0.47 -6.34 10.53 -8.06 -0.08 -6.43 16 25 C 0.08 0.97 6.74 -84.23 -0.57 0.40 16 26 C -0.08 -0.80 9.82 36.01 0.35 -0.45 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.57 6.47 -51.93 -0.34 0.24 16 32 H 0.11 2.84 5.37 -51.93 -0.28 2.56 16 33 H 0.04 0.83 7.84 -51.93 -0.41 0.42 16 34 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 36 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 37 H 0.06 1.12 6.47 -51.93 -0.34 0.78 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.40 3.99 8.47 -40.82 -0.35 3.65 16 40 H 0.11 0.83 7.43 -51.93 -0.39 0.44 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.75 7.35 -51.93 -0.38 0.37 16 LS Contribution 402.71 15.07 6.07 6.07 Total: -1.00 -34.72 402.71 -8.75 -43.46 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.50 Total: 0.02 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 0.69 Total: 7.88 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.21 Total: -55.25 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.26 Total: -18.51 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.37 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.49 Total: -1.04 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.72 -8.75 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508046667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.699 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds