Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00342 * 2 1 4 4 C 1.53002 * 109.47245 * 184.86622 * 3 2 1 5 5 N 1.46498 * 109.47115 * 66.68970 * 4 3 2 6 6 C 1.46497 * 120.00211 * 266.03426 * 5 4 3 7 7 C 1.50707 * 109.47118 * 275.98446 * 6 5 4 8 8 C 1.39864 * 126.04231 * 94.02725 * 7 6 5 9 9 C 1.50700 * 125.89663 * 0.02562 * 8 7 6 10 10 N 1.30833 * 108.20288 * 179.97438 * 8 7 6 11 11 N 1.40090 * 108.20752 * 0.02562 * 10 8 7 12 12 C 1.46491 * 126.03964 * 179.97438 * 11 10 8 13 13 C 1.34947 * 107.92208 * 359.75669 * 11 10 8 14 14 C 1.50704 * 126.12809 * 180.24248 * 13 11 10 15 15 C 1.34780 * 119.99916 * 86.03929 * 5 4 3 16 16 O 1.21283 * 119.99799 * 185.10582 * 15 5 4 17 17 C 1.50701 * 119.99880 * 5.10616 * 15 5 4 18 18 S 1.81001 * 109.47057 * 180.02562 * 17 15 5 19 19 C 1.76195 * 100.00064 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99871 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00297 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99796 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00320 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47492 * 89.99695 * 23 21 19 25 25 H 1.48499 * 109.47142 * 209.99791 * 23 21 19 26 26 H 1.48499 * 109.46896 * 329.99519 * 23 21 19 27 27 H 1.09005 * 109.47077 * 64.87477 * 1 2 3 28 28 H 1.09000 * 109.47632 * 184.87667 * 1 2 3 29 29 H 1.09008 * 109.47065 * 304.88105 * 1 2 3 30 30 H 1.08996 * 109.47138 * 64.86004 * 3 2 1 31 31 H 1.09009 * 109.46579 * 304.86057 * 3 2 1 32 32 H 1.09001 * 109.46714 * 306.69142 * 4 3 2 33 33 H 1.09000 * 109.46791 * 186.69447 * 4 3 2 34 34 H 1.09004 * 109.46950 * 35.97961 * 6 5 4 35 35 H 1.08993 * 109.47529 * 155.98335 * 6 5 4 36 36 H 1.09002 * 109.47172 * 95.83727 * 9 8 7 37 37 H 1.09002 * 109.46670 * 215.82686 * 9 8 7 38 38 H 1.08991 * 109.47531 * 335.82808 * 9 8 7 39 39 H 1.09002 * 109.47207 * 95.27105 * 12 11 10 40 40 H 1.08997 * 109.47544 * 215.27183 * 12 11 10 41 41 H 1.09004 * 109.47598 * 335.27569 * 12 11 10 42 42 H 1.09004 * 109.46673 * 273.14633 * 14 13 11 43 43 H 1.08998 * 109.46493 * 33.14619 * 14 13 11 44 44 H 1.08997 * 109.46846 * 153.14897 * 14 13 11 45 45 H 1.09005 * 109.46931 * 300.00120 * 17 15 5 46 46 H 1.08997 * 109.47379 * 59.99838 * 17 15 5 47 47 H 0.97003 * 119.99897 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5308 1.1867 -0.1224 5 7 3.8740 0.6479 -1.4408 6 6 4.0765 -0.7926 -1.6134 7 6 5.4911 -1.1499 -1.2357 8 6 5.9206 -1.5949 0.0188 9 6 5.0474 -1.8014 1.2296 10 7 7.2110 -1.8020 -0.0408 11 7 7.6444 -1.4943 -1.3370 12 6 9.0205 -1.5875 -1.8306 13 6 6.5694 -1.1015 -2.0520 14 6 6.5700 -0.6813 -3.4992 15 6 4.0035 1.4777 -2.4949 16 8 4.1959 1.0245 -3.6033 17 6 3.9093 2.9686 -2.2963 18 16 4.1217 3.8039 -3.8879 19 6 3.9698 5.4827 -3.3751 20 1 3.7979 5.7161 -2.3346 21 6 4.0710 6.5053 -4.3081 22 7 4.2810 6.2209 -5.5761 23 14 3.9106 8.2852 -3.7643 24 1 5.2503 8.8159 -3.4055 25 1 3.3392 9.0918 -4.8725 26 1 3.0147 8.3629 -2.5825 27 1 -0.3633 0.4364 -0.9305 28 1 -0.3634 -1.0239 0.0874 29 1 -0.3634 0.5877 0.8431 30 1 1.7593 1.8149 0.9303 31 1 1.6214 1.8762 -0.8433 32 1 3.9065 0.5182 0.6523 33 1 3.9828 2.1713 -0.0032 34 1 3.3814 -1.3365 -0.9737 35 1 3.8993 -1.0624 -2.6544 36 1 4.7528 -2.8490 1.2907 37 1 5.6008 -1.5267 2.1276 38 1 4.1574 -1.1778 1.1463 39 1 9.1652 -2.5486 -2.3239 40 1 9.2069 -0.7825 -2.5415 41 1 9.7134 -1.5008 -0.9937 42 1 6.7933 0.3834 -3.5683 43 1 7.3274 -1.2474 -4.0414 44 1 5.5899 -0.8760 -3.9345 45 1 2.9324 3.2190 -1.8825 46 1 4.6895 3.2935 -1.6080 47 1 4.3513 6.9356 -6.2282 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524713916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = -6.323219 kcal Electronic energy + Delta-G solvation = -28492.744660 eV Core-core repulsion = 24611.002072 eV Total energy + Delta-G solvation = -3881.742588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37205 -39.40732 -37.78844 -35.41171 -34.05760 -32.59288 -32.43360 -30.09718 -29.71524 -29.27167 -27.46280 -26.35428 -25.75355 -25.45768 -24.08457 -23.00739 -19.95910 -19.39359 -18.78434 -17.65836 -16.98621 -16.47969 -16.34262 -16.00445 -15.62909 -15.39350 -15.09170 -14.81066 -14.48372 -13.96456 -13.89070 -13.84343 -13.55150 -13.23981 -13.14805 -12.98889 -12.73877 -12.54787 -12.47849 -12.33229 -12.19981 -11.94094 -11.89173 -11.76237 -11.56702 -11.41595 -11.11342 -11.06399 -11.02316 -10.76838 -10.40297 -9.81511 -9.74334 -9.32348 -9.07135 -8.98202 -8.44930 -8.22772 -8.16928 -6.49340 -6.22464 -3.92213 1.90417 2.51185 2.61461 3.12746 3.16905 3.21092 3.27794 3.35086 3.69163 3.75831 4.20207 4.45692 4.73754 4.84301 4.97497 4.98967 5.03132 5.06213 5.12807 5.18666 5.22339 5.27873 5.30440 5.33263 5.37580 5.44511 5.50074 5.53613 5.55068 5.59584 5.63891 5.74891 5.79699 5.91356 5.92730 6.01829 6.15097 6.15964 6.23286 6.38012 6.73616 6.84054 7.03786 7.09911 7.58718 7.70808 7.80501 8.34400 8.67927 9.23182 10.84859 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010173 B = 0.003619 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.690284 B = 7734.706569 C = 9529.571331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.040 3.960 4 C 0.112 3.888 5 N -0.605 5.605 6 C 0.198 3.802 7 C -0.260 4.260 8 C 0.086 3.914 9 C -0.075 4.075 10 N -0.307 5.307 11 N -0.378 5.378 12 C 0.103 3.897 13 C 0.114 3.886 14 C -0.093 4.093 15 C 0.534 3.466 16 O -0.515 6.515 17 C -0.152 4.152 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.916 3.084 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -15.970 12.828 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.038 4.038 4 C -0.012 4.012 5 N -0.340 5.340 6 C 0.075 3.925 7 C -0.272 4.272 8 C -0.081 4.081 9 C -0.134 4.134 10 N -0.130 5.130 11 N -0.160 5.160 12 C -0.039 4.039 13 C -0.014 4.014 14 C -0.151 4.151 15 C 0.322 3.678 16 O -0.390 6.390 17 C -0.303 4.303 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.089 0.911 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.743 3.257 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.728 -17.122 11.574 20.739 hybrid contribution -1.040 2.304 1.285 2.835 sum 0.688 -14.818 12.859 19.631 Atomic orbital electron populations 1.22715 0.81273 1.02396 1.00051 1.87854 1.19489 1.27681 1.95426 1.23157 0.94667 0.85210 1.00796 1.21636 0.92637 1.01003 0.85948 1.47911 1.70544 1.07016 1.08488 1.19516 0.90200 0.80166 1.02603 1.20091 0.97107 1.16211 0.93795 1.22154 0.91747 0.98345 0.95863 1.20262 0.97529 1.02737 0.92847 1.77241 1.12573 1.25547 0.97608 1.48304 1.07219 1.52442 1.08060 1.21790 0.78713 1.02879 1.00474 1.21098 0.87010 0.97456 0.95813 1.20573 1.04626 1.02332 0.87569 1.20248 0.75424 0.88159 0.83991 1.90639 1.47300 1.77470 1.23556 1.23601 1.04388 0.94512 1.07768 1.85323 1.94369 1.00957 1.02602 1.22864 1.57186 0.91447 0.96813 0.91074 1.24968 0.94593 0.99412 0.94500 1.70018 1.45976 1.33171 1.01130 0.86204 0.78476 0.82701 0.78345 1.20302 1.20758 1.19710 0.94003 0.89864 0.94300 0.92407 0.92498 0.89378 0.88926 0.89602 0.89377 0.90687 0.91142 0.90003 0.91046 0.89603 0.89369 0.89602 0.91975 0.88323 0.89707 0.89604 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.32 9.94 -35.23 -0.35 -4.67 16 3 C 0.04 0.43 6.18 37.16 0.23 0.66 16 4 C 0.11 1.30 5.58 -4.04 -0.02 1.28 16 5 N -0.61 -8.77 2.43 -175.06 -0.43 -9.20 16 6 C 0.20 2.70 5.33 -5.19 -0.03 2.68 16 7 C -0.26 -3.65 5.67 -105.05 -0.60 -4.25 16 8 C 0.09 1.15 7.22 -82.41 -0.59 0.55 16 9 C -0.08 -0.74 10.07 36.01 0.36 -0.37 16 10 N -0.31 -4.53 12.58 33.67 0.42 -4.10 16 11 N -0.38 -5.14 4.01 -63.89 -0.26 -5.40 16 12 C 0.10 0.96 11.06 59.84 0.66 1.62 16 13 C 0.11 1.63 6.93 -82.26 -0.57 1.06 16 14 C -0.09 -1.26 8.76 36.01 0.32 -0.95 16 15 C 0.53 9.82 7.66 -10.98 -0.08 9.74 16 16 O -0.52 -10.82 13.13 5.56 0.07 -10.75 16 17 C -0.15 -3.04 4.67 36.01 0.17 -2.87 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 19 C -0.53 -15.01 9.50 30.94 0.29 -14.71 16 20 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 23 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.71 7.20 -51.92 -0.37 0.34 16 32 H 0.09 0.90 5.66 -51.93 -0.29 0.61 16 33 H 0.09 1.06 6.59 -51.93 -0.34 0.71 16 34 H 0.09 1.05 6.85 -51.93 -0.36 0.70 16 35 H 0.09 1.32 6.27 -51.93 -0.33 0.99 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.74 5.25 -51.93 -0.27 0.46 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.70 7.95 -51.93 -0.41 0.28 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 43 H 0.06 0.68 7.94 -51.93 -0.41 0.27 16 44 H 0.10 1.46 6.06 -51.93 -0.31 1.14 16 45 H 0.08 1.58 7.04 -51.91 -0.37 1.21 16 46 H 0.09 1.63 7.57 -51.92 -0.39 1.24 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -35.08 395.62 -7.13 -42.21 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.21 Total: 0.81 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 1.15 Total: -2.16 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.47 Total: -43.78 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.28 Total: -15.42 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.08 -7.13 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524713916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.884 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds