Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00342 * 2 1 4 4 C 1.53002 * 109.47245 * 184.86622 * 3 2 1 5 5 N 1.46498 * 109.47115 * 66.68970 * 4 3 2 6 6 C 1.46497 * 120.00211 * 266.03426 * 5 4 3 7 7 C 1.50707 * 109.47118 * 275.98446 * 6 5 4 8 8 C 1.39864 * 126.04231 * 94.02725 * 7 6 5 9 9 C 1.50700 * 125.89663 * 0.02562 * 8 7 6 10 10 N 1.30833 * 108.20288 * 179.97438 * 8 7 6 11 11 N 1.40090 * 108.20752 * 0.02562 * 10 8 7 12 12 C 1.46491 * 126.03964 * 179.97438 * 11 10 8 13 13 C 1.34947 * 107.92208 * 359.75669 * 11 10 8 14 14 C 1.50704 * 126.12809 * 180.24248 * 13 11 10 15 15 C 1.34780 * 119.99916 * 86.03929 * 5 4 3 16 16 O 1.21283 * 119.99799 * 185.10582 * 15 5 4 17 17 C 1.50701 * 119.99880 * 5.10616 * 15 5 4 18 18 S 1.81001 * 109.47057 * 180.02562 * 17 15 5 19 19 C 1.76195 * 100.00064 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99871 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00297 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99796 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00320 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47492 * 89.99695 * 23 21 19 25 25 H 1.48499 * 109.47142 * 209.99791 * 23 21 19 26 26 H 1.48499 * 109.46896 * 329.99519 * 23 21 19 27 27 H 1.09005 * 109.47077 * 64.87477 * 1 2 3 28 28 H 1.09000 * 109.47632 * 184.87667 * 1 2 3 29 29 H 1.09008 * 109.47065 * 304.88105 * 1 2 3 30 30 H 1.08996 * 109.47138 * 64.86004 * 3 2 1 31 31 H 1.09009 * 109.46579 * 304.86057 * 3 2 1 32 32 H 1.09001 * 109.46714 * 306.69142 * 4 3 2 33 33 H 1.09000 * 109.46791 * 186.69447 * 4 3 2 34 34 H 1.09004 * 109.46950 * 35.97961 * 6 5 4 35 35 H 1.08993 * 109.47529 * 155.98335 * 6 5 4 36 36 H 1.09002 * 109.47172 * 95.83727 * 9 8 7 37 37 H 1.09002 * 109.46670 * 215.82686 * 9 8 7 38 38 H 1.08991 * 109.47531 * 335.82808 * 9 8 7 39 39 H 1.09002 * 109.47207 * 95.27105 * 12 11 10 40 40 H 1.08997 * 109.47544 * 215.27183 * 12 11 10 41 41 H 1.09004 * 109.47598 * 335.27569 * 12 11 10 42 42 H 1.09004 * 109.46673 * 273.14633 * 14 13 11 43 43 H 1.08998 * 109.46493 * 33.14619 * 14 13 11 44 44 H 1.08997 * 109.46846 * 153.14897 * 14 13 11 45 45 H 1.09005 * 109.46931 * 300.00120 * 17 15 5 46 46 H 1.08997 * 109.47379 * 59.99838 * 17 15 5 47 47 H 0.97003 * 119.99897 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5308 1.1867 -0.1224 5 7 3.8740 0.6479 -1.4408 6 6 4.0765 -0.7926 -1.6134 7 6 5.4911 -1.1499 -1.2357 8 6 5.9206 -1.5949 0.0188 9 6 5.0474 -1.8014 1.2296 10 7 7.2110 -1.8020 -0.0408 11 7 7.6444 -1.4943 -1.3370 12 6 9.0205 -1.5875 -1.8306 13 6 6.5694 -1.1015 -2.0520 14 6 6.5700 -0.6813 -3.4992 15 6 4.0035 1.4777 -2.4949 16 8 4.1959 1.0245 -3.6033 17 6 3.9093 2.9686 -2.2963 18 16 4.1217 3.8039 -3.8879 19 6 3.9698 5.4827 -3.3751 20 1 3.7979 5.7161 -2.3346 21 6 4.0710 6.5053 -4.3081 22 7 4.2810 6.2209 -5.5761 23 14 3.9106 8.2852 -3.7643 24 1 5.2503 8.8159 -3.4055 25 1 3.3392 9.0918 -4.8725 26 1 3.0147 8.3629 -2.5825 27 1 -0.3633 0.4364 -0.9305 28 1 -0.3634 -1.0239 0.0874 29 1 -0.3634 0.5877 0.8431 30 1 1.7593 1.8149 0.9303 31 1 1.6214 1.8762 -0.8433 32 1 3.9065 0.5182 0.6523 33 1 3.9828 2.1713 -0.0032 34 1 3.3814 -1.3365 -0.9737 35 1 3.8993 -1.0624 -2.6544 36 1 4.7528 -2.8490 1.2907 37 1 5.6008 -1.5267 2.1276 38 1 4.1574 -1.1778 1.1463 39 1 9.1652 -2.5486 -2.3239 40 1 9.2069 -0.7825 -2.5415 41 1 9.7134 -1.5008 -0.9937 42 1 6.7933 0.3834 -3.5683 43 1 7.3274 -1.2474 -4.0414 44 1 5.5899 -0.8760 -3.9345 45 1 2.9324 3.2190 -1.8825 46 1 4.6895 3.2935 -1.6080 47 1 4.3513 6.9356 -6.2282 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524713916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = -29.039348 kcal Electronic energy + Delta-G solvation = -28493.729705 eV Core-core repulsion = 24611.002072 eV Total energy + Delta-G solvation = -3882.727634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.41219 -40.70927 -38.72307 -36.61588 -35.02945 -34.56675 -33.68101 -31.24643 -30.74520 -30.35143 -28.62645 -27.64542 -27.15385 -26.65270 -25.13083 -24.00940 -21.13128 -20.43064 -20.14489 -19.40935 -18.20816 -17.59438 -17.36034 -17.02553 -16.86520 -16.62231 -16.56420 -16.15147 -15.70125 -15.55149 -14.98248 -14.86721 -14.57586 -14.46702 -14.23389 -14.17351 -14.02065 -13.68365 -13.53035 -13.31487 -13.13512 -13.08455 -12.97599 -12.87687 -12.85356 -12.70996 -12.64931 -12.60424 -12.40882 -11.97072 -11.71470 -11.42779 -11.13042 -10.80713 -10.55478 -10.22729 -9.99323 -9.65205 -9.27049 -8.62430 -8.33201 -6.09659 0.83626 1.27476 1.42009 1.44571 1.53262 1.58609 1.68507 1.76436 2.27865 2.41655 2.90817 3.00980 3.29480 3.55679 3.70059 3.74894 4.07086 4.08908 4.15087 4.24069 4.32154 4.35440 4.35955 4.42915 4.47661 4.51576 4.56511 4.59430 4.60633 4.63861 4.65307 4.66598 4.84403 4.86705 4.90849 4.95034 5.09472 5.12562 5.17543 5.32930 5.43130 5.64857 5.80583 6.10222 6.20964 6.23018 6.44789 6.77122 7.08538 7.27285 8.75704 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010173 B = 0.003619 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.690284 B = 7734.706569 C = 9529.571331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.043 3.957 4 C 0.105 3.895 5 N -0.592 5.592 6 C 0.206 3.794 7 C -0.272 4.272 8 C 0.084 3.916 9 C -0.073 4.073 10 N -0.331 5.331 11 N -0.382 5.382 12 C 0.093 3.907 13 C 0.099 3.901 14 C -0.081 4.081 15 C 0.533 3.467 16 O -0.549 6.549 17 C -0.126 4.126 18 S -0.139 6.139 19 C -0.547 4.547 20 H 0.079 0.921 21 C 0.017 3.983 22 N -0.910 5.910 23 Si 0.993 3.007 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.258 1.258 27 H 0.030 0.970 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 -16.016 15.578 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C -0.034 4.034 4 C -0.018 4.018 5 N -0.325 5.325 6 C 0.083 3.917 7 C -0.284 4.284 8 C -0.082 4.082 9 C -0.131 4.131 10 N -0.153 5.153 11 N -0.164 5.164 12 C -0.047 4.047 13 C -0.030 4.030 14 C -0.139 4.139 15 C 0.320 3.680 16 O -0.426 6.426 17 C -0.277 4.277 18 S 0.088 5.912 19 C -0.695 4.695 20 H 0.098 0.902 21 C -0.188 4.188 22 N -0.546 5.546 23 Si 0.815 3.185 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.182 1.182 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.361 -17.194 14.371 22.450 hybrid contribution -0.919 2.181 0.493 2.417 sum 0.442 -15.013 14.865 21.132 Atomic orbital electron populations 1.22855 0.80092 1.03688 1.00166 1.87820 1.20777 1.27682 1.95518 1.23095 0.93709 0.85297 1.01340 1.21920 0.93617 1.01649 0.84604 1.47888 1.68915 1.07049 1.08640 1.19503 0.90752 0.79417 1.02006 1.20197 0.97026 1.16800 0.94365 1.22666 0.91679 0.97320 0.96575 1.20374 0.97230 1.03895 0.91576 1.77201 1.13347 1.26467 0.98318 1.48623 1.08240 1.51836 1.07700 1.22099 0.77056 1.04329 1.01187 1.21237 0.87816 0.97918 0.96003 1.20397 1.04506 1.01063 0.87979 1.20012 0.75727 0.87788 0.84484 1.90634 1.49192 1.77699 1.25105 1.23418 1.05590 0.95092 1.03599 1.85461 1.94769 1.02361 1.08597 1.23197 1.57104 0.91846 0.97310 0.90241 1.26047 0.93878 1.04496 0.94396 1.70175 1.47124 1.34788 1.02556 0.85026 0.78899 0.76239 0.78288 1.19447 1.20309 1.18213 0.95094 0.88328 0.92717 0.89641 0.94497 0.87344 0.88495 0.87691 0.91178 0.89256 0.90263 0.89062 0.89176 0.88697 0.88450 0.92020 0.89499 0.89885 0.88101 0.88420 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.40 -7.98 9.94 -148.98 -1.48 -9.46 16 3 C 0.04 0.84 6.18 71.98 0.44 1.29 16 4 C 0.10 2.20 5.58 86.38 0.48 2.69 16 5 N -0.59 -16.68 2.43 -826.14 -2.01 -18.70 16 6 C 0.21 5.47 5.33 85.64 0.46 5.93 16 7 C -0.27 -7.41 5.67 -20.14 -0.11 -7.53 16 8 C 0.08 2.11 7.22 43.10 0.31 2.42 16 9 C -0.07 -1.22 10.07 71.24 0.72 -0.50 16 10 N -0.33 -9.29 12.58 -47.39 -0.60 -9.89 16 11 N -0.38 -10.05 4.01 -356.04 -1.43 -11.48 16 12 C 0.09 1.63 11.06 127.77 1.41 3.04 16 13 C 0.10 2.81 6.93 41.41 0.29 3.10 16 14 C -0.08 -2.28 8.76 71.24 0.62 -1.65 16 15 C 0.53 19.79 7.66 87.66 0.67 20.47 16 16 O -0.55 -23.96 13.13 -3.04 -0.04 -24.00 16 17 C -0.13 -5.03 4.67 71.24 0.33 -4.69 16 18 S -0.14 -7.59 20.57 -56.49 -1.16 -8.75 16 19 C -0.55 -30.90 9.50 67.95 0.65 -30.25 16 20 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 21 C 0.02 0.94 5.49 84.86 0.47 1.41 16 22 N -0.91 -55.27 13.22 21.65 0.29 -54.98 16 23 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 27 H 0.03 0.54 8.14 -2.38 -0.02 0.53 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 0.87 7.20 -2.38 -0.02 0.86 16 32 H 0.11 1.88 5.66 -2.39 -0.01 1.87 16 33 H 0.10 1.98 6.59 -2.39 -0.02 1.97 16 34 H 0.11 2.38 6.85 -2.38 -0.02 2.36 16 35 H 0.07 2.14 6.27 -2.39 -0.01 2.12 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.34 5.25 -2.39 -0.01 1.32 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.46 7.95 -2.39 -0.02 1.44 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 2.02 8.09 -2.39 -0.02 2.00 16 43 H 0.09 1.90 7.94 -2.39 -0.02 1.88 16 44 H 0.08 2.59 6.06 -2.39 -0.01 2.57 16 45 H 0.10 3.69 7.04 -2.39 -0.02 3.67 16 46 H 0.10 3.65 7.57 -2.40 -0.02 3.63 16 47 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -77.57 395.62 4.56 -73.02 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.97 Total: 21.62 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 7.99 Total: -2.60 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -3.75 Total: -95.04 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.52 Total: -33.46 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.16 Total: -8.75 kcal Total: -77.57 4.56 -73.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524713916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.978 kcal (2) G-P(sol) polarization free energy of solvation -77.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds