Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34326 * 126.44983 * 2 1 4 4 N 1.34473 * 107.67245 * 179.97438 * 3 2 1 5 5 C 1.30256 * 108.69714 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.61513 * 179.97438 * 5 4 3 7 7 N 1.46907 * 109.47256 * 90.02340 * 6 5 4 8 8 C 1.46895 * 110.99925 * 174.41547 * 7 6 5 9 9 H 1.09000 * 109.47216 * 33.13507 * 8 7 6 10 10 C 1.53003 * 109.46883 * 153.13090 * 8 7 6 11 11 N 1.46494 * 109.47215 * 304.99962 * 10 8 7 12 12 C 1.34779 * 119.99997 * 179.97438 * 11 10 8 13 13 O 1.21278 * 120.00286 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99963 * 179.97438 * 12 11 10 15 15 S 1.80991 * 109.47252 * 180.02562 * 14 12 11 16 16 C 1.76197 * 100.00435 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99303 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00335 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99979 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00154 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47019 * 59.99773 * 20 18 16 22 22 H 1.48494 * 109.47403 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46894 * 300.00017 * 20 18 16 24 24 C 1.53006 * 109.47163 * 273.12760 * 8 7 6 25 25 C 1.52997 * 109.46857 * 178.32079 * 24 8 7 26 26 C 1.52999 * 109.47347 * 298.32309 * 24 8 7 27 27 O 1.33960 * 108.76567 * 359.97438 * 5 4 3 28 28 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46890 * 300.03539 * 1 2 3 30 30 H 1.09007 * 109.46328 * 60.02795 * 1 2 3 31 31 H 1.08006 * 126.15831 * 359.94586 * 3 2 1 32 32 H 1.09005 * 109.47072 * 210.01957 * 6 5 4 33 33 H 1.09002 * 109.47578 * 330.02490 * 6 5 4 34 34 H 1.00896 * 110.99408 * 298.37333 * 7 6 5 35 35 H 1.09006 * 109.46860 * 65.00052 * 10 8 7 36 36 H 1.08994 * 109.47012 * 184.99770 * 10 8 7 37 37 H 0.97003 * 120.00253 * 359.97438 * 11 10 8 38 38 H 1.08999 * 109.47155 * 300.00507 * 14 12 11 39 39 H 1.09000 * 109.46811 * 60.00334 * 14 12 11 40 40 H 0.97000 * 120.00308 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.46599 * 58.32064 * 24 8 7 42 42 H 1.08998 * 109.47365 * 65.77491 * 25 24 8 43 43 H 1.09004 * 109.46898 * 185.77538 * 25 24 8 44 44 H 1.09004 * 109.47443 * 305.77214 * 25 24 8 45 45 H 1.09001 * 109.47119 * 59.99909 * 26 24 8 46 46 H 1.08988 * 109.46779 * 179.97438 * 26 24 8 47 47 H 1.08994 * 109.46855 * 300.00077 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3051 1.0805 0.0000 4 7 3.5783 0.6476 0.0006 5 6 3.5764 -0.6549 0.0004 6 6 4.8004 -1.5342 0.0003 7 7 5.1977 -1.8207 1.3853 8 6 6.3074 -2.7823 1.4265 9 1 6.9501 -2.6327 0.5590 10 6 7.1194 -2.5694 2.7056 11 7 7.5539 -1.1725 2.7814 12 6 8.2880 -0.7510 3.8302 13 8 8.5893 -1.5284 4.7110 14 6 8.7355 0.6860 3.9079 15 16 9.6960 0.9378 5.4211 16 6 10.0799 2.6498 5.2586 17 1 9.7292 3.2026 4.3997 18 6 10.8331 3.2878 6.2343 19 7 11.2611 2.6139 7.2809 20 14 11.2396 5.1029 6.0623 21 1 9.9809 5.8892 6.0094 22 1 12.0482 5.5418 7.2279 23 1 12.0122 5.3209 4.8130 24 6 5.7489 -4.2067 1.4080 25 6 6.9057 -5.2080 1.4087 26 6 4.8803 -4.4300 2.6476 27 8 2.3075 -1.0841 0.0002 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5144 0.8897 30 1 -0.3632 0.5135 -0.8903 31 1 1.9823 2.1112 -0.0008 32 1 4.5763 -2.4688 -0.5140 33 1 5.6149 -1.0233 -0.5130 34 1 5.4362 -0.9719 1.8758 35 1 6.5012 -2.8052 3.5719 36 1 7.9927 -3.2215 2.6943 37 1 7.3133 -0.5507 2.0768 38 1 9.3542 0.9212 3.0419 39 1 7.8623 1.3383 3.9186 40 1 11.7871 3.0598 7.9630 41 1 5.1457 -4.3488 0.5113 42 1 7.4482 -5.1359 2.3513 43 1 6.5121 -6.2178 1.2922 44 1 7.5809 -4.9837 0.5828 45 1 4.0562 -3.7166 2.6472 46 1 4.4822 -5.4445 2.6342 47 1 5.4834 -4.2878 3.5443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568443398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = -21.523212 kcal Electronic energy + Delta-G solvation = -26928.374532 eV Core-core repulsion = 23045.972822 eV Total energy + Delta-G solvation = -3882.401710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.59717 -39.73308 -38.20708 -35.14603 -34.57722 -34.07399 -32.56818 -32.41275 -30.11753 -28.72970 -27.35012 -26.80739 -25.47061 -24.87617 -23.60105 -22.49714 -21.28666 -20.47830 -19.42199 -17.98090 -17.46574 -17.11452 -16.49355 -16.40971 -15.96126 -15.42554 -14.89070 -14.83020 -14.78602 -14.70439 -14.50568 -14.02173 -13.71511 -13.57274 -13.52365 -13.27874 -13.09566 -12.96164 -12.72852 -12.54681 -12.30369 -12.20940 -12.10343 -11.62764 -11.54463 -11.27186 -11.11449 -11.03058 -11.02287 -10.81044 -10.76673 -10.65042 -9.81271 -9.42618 -9.08047 -9.04955 -8.91655 -8.88614 -8.22951 -6.48545 -6.19990 -3.90566 1.09885 2.27648 2.38643 3.00967 3.08216 3.25061 3.28520 3.31762 3.53978 3.70801 3.89864 4.22047 4.32481 4.40448 4.62590 4.63992 4.70748 4.79066 4.86392 4.96671 5.01978 5.06381 5.10129 5.15064 5.15388 5.19388 5.36413 5.48125 5.51441 5.55136 5.61208 5.71060 5.73683 5.81203 5.88203 5.89229 5.90715 6.00192 6.11192 6.15360 6.24539 6.45326 6.54663 6.84138 7.44511 7.60243 7.62121 8.36775 8.58114 9.25243 10.87385 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.002513 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.850633 B =11139.776219 C =13519.458823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.047 4.047 3 C -0.043 4.043 4 N -0.475 5.475 5 C 0.194 3.806 6 C 0.155 3.845 7 N -0.681 5.681 8 C 0.083 3.917 9 H 0.058 0.942 10 C 0.114 3.886 11 N -0.744 5.744 12 C 0.534 3.466 13 O -0.514 6.514 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.079 4.079 25 C -0.154 4.154 26 C -0.145 4.145 27 O -0.193 6.193 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.183 0.817 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.354 0.646 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.393 0.607 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.048 0.952 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.018 -11.384 -19.340 30.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C -0.182 4.182 4 N -0.204 5.204 5 C -0.013 4.013 6 C 0.025 3.975 7 N -0.317 5.317 8 C -0.026 4.026 9 H 0.076 0.924 10 C -0.010 4.010 11 N -0.400 5.400 12 C 0.320 3.680 13 O -0.388 6.388 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.099 4.099 25 C -0.212 4.212 26 C -0.202 4.202 27 O -0.080 6.080 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.200 0.800 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.175 0.825 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.227 0.773 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.341 -12.854 -17.583 29.128 hybrid contribution -0.174 2.704 -1.782 3.243 sum -19.515 -10.150 -19.365 29.306 Atomic orbital electron populations 1.20285 0.83986 1.04353 1.03923 1.23512 0.95122 0.84621 1.06832 1.23068 0.87719 1.00479 1.06941 1.70446 1.23344 1.09144 1.17485 1.25969 0.84296 0.89956 1.01089 1.20246 0.88401 0.97013 0.91836 1.60360 1.40842 1.17705 1.12800 1.21864 0.90020 0.93208 0.97515 0.92374 1.21654 0.98460 0.83223 0.97688 1.46079 1.57045 1.11298 1.25544 1.20287 0.76912 0.89993 0.80769 1.90706 1.54256 1.56072 1.37742 1.23540 1.04750 0.94563 1.07644 1.85376 1.64770 1.12608 1.20474 1.22829 1.39667 0.94972 1.10929 0.90975 1.24987 0.94979 0.99126 0.94474 1.70006 1.34217 1.36536 1.09566 0.86227 0.78539 0.82939 0.77815 1.19924 1.20816 1.19943 1.21035 0.96819 0.92231 0.99814 1.21943 0.98026 0.98827 1.02401 1.21820 1.00256 1.01125 0.97003 1.84399 1.17760 1.36420 1.69385 0.90370 0.89199 0.89363 0.79975 0.87984 0.90397 0.82450 0.90047 0.90419 0.77286 0.89246 0.89169 0.92137 0.91006 0.91920 0.92346 0.92669 0.91372 0.93318 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.43 36.01 0.38 0.06 16 2 C -0.05 -0.42 7.39 -35.69 -0.26 -0.68 16 3 C -0.04 -0.43 11.80 -17.78 -0.21 -0.64 16 4 N -0.47 -5.63 11.29 -11.10 -0.13 -5.75 16 5 C 0.19 2.03 7.90 -12.94 -0.10 1.92 16 6 C 0.15 1.19 6.08 -4.97 -0.03 1.16 16 7 N -0.68 -5.88 5.57 -107.98 -0.60 -6.49 16 8 C 0.08 0.67 2.00 -67.71 -0.14 0.54 16 9 H 0.06 0.41 7.83 -51.93 -0.41 0.01 16 10 C 0.11 1.28 4.60 -4.04 -0.02 1.26 16 11 N -0.74 -9.72 4.97 -60.29 -0.30 -10.02 16 12 C 0.53 9.93 7.85 -10.98 -0.09 9.85 16 13 O -0.51 -11.63 15.86 5.56 0.09 -11.54 16 14 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 20 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.08 -0.59 2.84 -90.62 -0.26 -0.85 16 25 C -0.15 -1.09 8.72 37.16 0.32 -0.76 16 26 C -0.14 -1.24 8.67 37.16 0.32 -0.91 16 27 O -0.19 -2.05 10.78 5.37 0.06 -1.99 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.10 0.62 7.44 -51.93 -0.39 0.24 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.35 3.50 6.77 -39.29 -0.27 3.24 16 35 H 0.08 1.03 6.13 -51.93 -0.32 0.72 16 36 H 0.08 0.92 6.87 -51.93 -0.36 0.56 16 37 H 0.39 4.16 7.41 -40.82 -0.30 3.86 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.07 0.49 7.48 -51.93 -0.39 0.10 16 42 H 0.06 0.50 6.90 -51.93 -0.36 0.15 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.66 7.65 -51.93 -0.40 0.26 16 46 H 0.05 0.37 8.14 -51.94 -0.42 -0.05 16 47 H 0.06 0.55 6.29 -51.93 -0.33 0.23 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -36.09 400.78 -8.28 -44.37 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.28 Total: 3.29 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 0.34 Total: -5.06 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.29 Total: -47.88 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.15 Total: -13.53 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.09 -8.28 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568443398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.852 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds