Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34326 * 126.44983 * 2 1 4 4 N 1.34473 * 107.67245 * 179.97438 * 3 2 1 5 5 C 1.30256 * 108.69714 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.61513 * 179.97438 * 5 4 3 7 7 N 1.46907 * 109.47256 * 90.02340 * 6 5 4 8 8 C 1.46895 * 110.99925 * 174.41547 * 7 6 5 9 9 H 1.09000 * 109.47216 * 33.13507 * 8 7 6 10 10 C 1.53003 * 109.46883 * 153.13090 * 8 7 6 11 11 N 1.46494 * 109.47215 * 304.99962 * 10 8 7 12 12 C 1.34779 * 119.99997 * 179.97438 * 11 10 8 13 13 O 1.21278 * 120.00286 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99963 * 179.97438 * 12 11 10 15 15 S 1.80991 * 109.47252 * 180.02562 * 14 12 11 16 16 C 1.76197 * 100.00435 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99303 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00335 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99979 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00154 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47019 * 59.99773 * 20 18 16 22 22 H 1.48494 * 109.47403 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46894 * 300.00017 * 20 18 16 24 24 C 1.53006 * 109.47163 * 273.12760 * 8 7 6 25 25 C 1.52997 * 109.46857 * 178.32079 * 24 8 7 26 26 C 1.52999 * 109.47347 * 298.32309 * 24 8 7 27 27 O 1.33960 * 108.76567 * 359.97438 * 5 4 3 28 28 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46890 * 300.03539 * 1 2 3 30 30 H 1.09007 * 109.46328 * 60.02795 * 1 2 3 31 31 H 1.08006 * 126.15831 * 359.94586 * 3 2 1 32 32 H 1.09005 * 109.47072 * 210.01957 * 6 5 4 33 33 H 1.09002 * 109.47578 * 330.02490 * 6 5 4 34 34 H 1.00896 * 110.99408 * 298.37333 * 7 6 5 35 35 H 1.09006 * 109.46860 * 65.00052 * 10 8 7 36 36 H 1.08994 * 109.47012 * 184.99770 * 10 8 7 37 37 H 0.97003 * 120.00253 * 359.97438 * 11 10 8 38 38 H 1.08999 * 109.47155 * 300.00507 * 14 12 11 39 39 H 1.09000 * 109.46811 * 60.00334 * 14 12 11 40 40 H 0.97000 * 120.00308 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.46599 * 58.32064 * 24 8 7 42 42 H 1.08998 * 109.47365 * 65.77491 * 25 24 8 43 43 H 1.09004 * 109.46898 * 185.77538 * 25 24 8 44 44 H 1.09004 * 109.47443 * 305.77214 * 25 24 8 45 45 H 1.09001 * 109.47119 * 59.99909 * 26 24 8 46 46 H 1.08988 * 109.46779 * 179.97438 * 26 24 8 47 47 H 1.08994 * 109.46855 * 300.00077 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3051 1.0805 0.0000 4 7 3.5783 0.6476 0.0006 5 6 3.5764 -0.6549 0.0004 6 6 4.8004 -1.5342 0.0003 7 7 5.1977 -1.8207 1.3853 8 6 6.3074 -2.7823 1.4265 9 1 6.9501 -2.6327 0.5590 10 6 7.1194 -2.5694 2.7056 11 7 7.5539 -1.1725 2.7814 12 6 8.2880 -0.7510 3.8302 13 8 8.5893 -1.5284 4.7110 14 6 8.7355 0.6860 3.9079 15 16 9.6960 0.9378 5.4211 16 6 10.0799 2.6498 5.2586 17 1 9.7292 3.2026 4.3997 18 6 10.8331 3.2878 6.2343 19 7 11.2611 2.6139 7.2809 20 14 11.2396 5.1029 6.0623 21 1 9.9809 5.8892 6.0094 22 1 12.0482 5.5418 7.2279 23 1 12.0122 5.3209 4.8130 24 6 5.7489 -4.2067 1.4080 25 6 6.9057 -5.2080 1.4087 26 6 4.8803 -4.4300 2.6476 27 8 2.3075 -1.0841 0.0002 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5144 0.8897 30 1 -0.3632 0.5135 -0.8903 31 1 1.9823 2.1112 -0.0008 32 1 4.5763 -2.4688 -0.5140 33 1 5.6149 -1.0233 -0.5130 34 1 5.4362 -0.9719 1.8758 35 1 6.5012 -2.8052 3.5719 36 1 7.9927 -3.2215 2.6943 37 1 7.3133 -0.5507 2.0768 38 1 9.3542 0.9212 3.0419 39 1 7.8623 1.3383 3.9186 40 1 11.7871 3.0598 7.9630 41 1 5.1457 -4.3488 0.5113 42 1 7.4482 -5.1359 2.3513 43 1 6.5121 -6.2178 1.2922 44 1 7.5809 -4.9837 0.5828 45 1 4.0562 -3.7166 2.6472 46 1 4.4822 -5.4445 2.6342 47 1 5.4834 -4.2878 3.5443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568443398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = -49.593298 kcal Electronic energy + Delta-G solvation = -26929.591742 eV Core-core repulsion = 23045.972822 eV Total energy + Delta-G solvation = -3883.618920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.30379 -40.92532 -39.25136 -35.87580 -35.30565 -35.21748 -34.58904 -33.14761 -31.45788 -29.61791 -28.05026 -27.79320 -27.45764 -25.58756 -24.36697 -23.18445 -22.00456 -21.85477 -20.29106 -19.70411 -18.41190 -17.87446 -17.80437 -17.43735 -16.90050 -16.88331 -16.33924 -16.12309 -15.93708 -15.50800 -15.33064 -15.12131 -14.65764 -14.63125 -14.36542 -14.21950 -14.07655 -13.84651 -13.56652 -13.47818 -13.24763 -13.17776 -13.02034 -12.87754 -12.74518 -12.63734 -12.61988 -12.35603 -11.92087 -11.76749 -11.74384 -11.55603 -11.35399 -11.13551 -10.98167 -10.29496 -10.15871 -9.72952 -9.53402 -8.67329 -8.35036 -6.13209 0.41441 1.25551 1.43351 1.45528 1.55502 1.57451 1.60669 1.71900 2.21475 2.27546 2.89849 2.98882 3.22835 3.30827 3.57708 3.84128 3.91739 4.00854 4.08203 4.10601 4.15959 4.26683 4.31884 4.38178 4.40218 4.48929 4.53154 4.65629 4.68478 4.69062 4.72903 4.87818 4.94422 5.04975 5.12044 5.16991 5.19552 5.26927 5.33239 5.36528 5.41038 5.51289 5.56308 5.80406 6.09013 6.19098 6.38096 6.72898 7.06068 7.17808 8.73929 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.002513 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.850633 B =11139.776219 C =13519.458823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.046 4.046 3 C -0.069 4.069 4 N -0.505 5.505 5 C 0.183 3.817 6 C 0.157 3.843 7 N -0.687 5.687 8 C 0.095 3.905 9 H 0.080 0.920 10 C 0.114 3.886 11 N -0.716 5.716 12 C 0.537 3.463 13 O -0.561 6.561 14 C -0.131 4.131 15 S -0.148 6.148 16 C -0.548 4.548 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.074 4.074 25 C -0.153 4.153 26 C -0.142 4.142 27 O -0.207 6.207 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.200 0.800 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.409 0.591 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.271 0.729 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.301 -10.802 -21.976 32.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C -0.207 4.207 4 N -0.235 5.235 5 C -0.024 4.024 6 C 0.028 3.972 7 N -0.322 5.322 8 C -0.014 4.014 9 H 0.098 0.902 10 C -0.009 4.009 11 N -0.371 5.371 12 C 0.323 3.677 13 O -0.439 6.439 14 C -0.282 4.282 15 S 0.080 5.920 16 C -0.696 4.696 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.093 4.093 25 C -0.211 4.211 26 C -0.199 4.199 27 O -0.093 6.093 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.217 0.783 32 H 0.140 0.860 33 H 0.109 0.891 34 H 0.166 0.834 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.246 0.754 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.664 -12.281 -20.280 31.450 hybrid contribution 0.096 2.444 -1.034 2.655 sum -20.568 -9.837 -21.314 31.211 Atomic orbital electron populations 1.20494 0.81178 1.05216 1.05496 1.24257 0.96650 0.83940 1.05112 1.23472 0.87491 1.01761 1.07981 1.70412 1.24565 1.10080 1.18474 1.26456 0.84926 0.90014 1.00961 1.20404 0.87795 0.97732 0.91272 1.60351 1.40970 1.17302 1.13618 1.21809 0.89783 0.93595 0.96207 0.90249 1.21769 0.98573 0.81530 0.99070 1.45790 1.54728 1.12555 1.24054 1.19999 0.77375 0.88913 0.81457 1.90696 1.56501 1.56851 1.39826 1.23380 1.04384 0.96390 1.04092 1.85538 1.66942 1.13482 1.26078 1.23167 1.39872 0.95084 1.11437 0.90030 1.26123 0.94549 1.04585 0.93867 1.70172 1.35087 1.38846 1.10600 0.85014 0.78698 0.76106 0.78242 1.18753 1.20292 1.18627 1.21028 0.96881 0.91656 0.99783 1.21930 0.97896 0.99231 1.02013 1.21778 0.99830 1.01305 0.97036 1.84407 1.18129 1.37208 1.69586 0.89837 0.87907 0.87332 0.78311 0.86039 0.89132 0.83425 0.91586 0.90684 0.75378 0.87212 0.87527 0.91960 0.89295 0.93405 0.91502 0.91630 0.92515 0.92467 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.43 71.24 0.74 0.25 16 2 C -0.05 -0.76 7.39 24.79 0.18 -0.58 16 3 C -0.07 -1.30 11.80 83.39 0.98 -0.32 16 4 N -0.51 -11.57 11.29 -303.84 -3.43 -15.01 16 5 C 0.18 3.61 7.90 88.34 0.70 4.31 16 6 C 0.16 2.07 6.08 85.56 0.52 2.59 16 7 N -0.69 -10.63 5.57 -495.54 -2.76 -13.39 16 8 C 0.10 1.34 2.00 44.92 0.09 1.43 16 9 H 0.08 0.85 7.83 -2.39 -0.02 0.83 16 10 C 0.11 2.46 4.60 86.38 0.40 2.86 16 11 N -0.72 -17.86 4.97 -463.06 -2.30 -20.16 16 12 C 0.54 19.89 7.85 87.66 0.69 20.57 16 13 O -0.56 -26.07 15.86 -3.02 -0.05 -26.12 16 14 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 15 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 16 C -0.55 -31.67 9.50 67.95 0.65 -31.02 16 17 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 18 C 0.01 0.78 5.49 84.86 0.47 1.25 16 19 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 20 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 C -0.07 -0.94 2.84 -10.79 -0.03 -0.97 16 25 C -0.15 -1.86 8.72 71.98 0.63 -1.23 16 26 C -0.14 -2.30 8.67 71.98 0.62 -1.68 16 27 O -0.21 -4.13 10.78 -3.70 -0.04 -4.17 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.12 1.11 7.44 -2.38 -0.02 1.09 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.35 6.33 6.77 -89.70 -0.61 5.72 16 35 H 0.07 1.69 6.13 -2.38 -0.01 1.68 16 36 H 0.07 1.73 6.87 -2.39 -0.02 1.71 16 37 H 0.41 7.78 7.41 -92.71 -0.69 7.10 16 38 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 39 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 41 H 0.09 0.90 7.48 -2.39 -0.02 0.88 16 42 H 0.05 0.73 6.90 -2.39 -0.02 0.71 16 43 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.06 1.05 7.65 -2.39 -0.02 1.03 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.04 0.80 6.29 -2.39 -0.02 0.79 16 Total: -1.00 -81.15 400.78 -0.65 -81.80 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.30 Total: 23.93 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 7.07 Total: -7.38 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -8.21 Total: -104.70 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.09 Total: -30.29 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -81.15 -0.65 -81.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568443398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.211 kcal (2) G-P(sol) polarization free energy of solvation -81.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds