Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30180 * 126.80257 * 2 1 4 4 O 1.20921 * 111.60526 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 N 1.46899 * 109.47107 * 269.67438 * 8 7 5 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46950 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47071 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47301 * 179.97438 * 12 11 10 14 14 C 1.46497 * 119.99866 * 90.00086 * 13 12 11 15 15 C 1.34775 * 120.00608 * 270.00440 * 13 12 11 16 16 O 1.21284 * 119.99479 * 359.97438 * 15 13 12 17 17 C 1.50699 * 120.00241 * 180.02562 * 15 13 12 18 18 S 1.81008 * 109.46894 * 179.97438 * 17 15 13 19 19 C 1.76204 * 99.99694 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00242 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99688 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00300 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99831 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47193 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46931 * 120.00387 * 23 21 19 26 26 H 1.48500 * 109.46921 * 240.00031 * 23 21 19 27 27 H 1.08998 * 109.47175 * 269.97179 * 1 2 3 28 28 H 1.09001 * 109.47365 * 29.97178 * 1 2 3 29 29 H 1.09004 * 109.47013 * 149.97293 * 1 2 3 30 30 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 31 31 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 32 32 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 33 33 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 34 34 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 35 35 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 36 36 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 37 37 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 38 38 H 1.09005 * 109.47424 * 300.00229 * 11 10 9 39 39 H 1.09004 * 109.47266 * 59.99979 * 11 10 9 40 40 H 1.08995 * 109.47051 * 300.00167 * 12 11 10 41 41 H 1.09003 * 109.46901 * 60.00330 * 12 11 10 42 42 H 1.08997 * 109.47390 * 89.99926 * 14 13 12 43 43 H 1.09000 * 109.47699 * 210.00108 * 14 13 12 44 44 H 1.08999 * 109.47273 * 330.00170 * 14 13 12 45 45 H 1.08998 * 109.47212 * 299.99291 * 17 15 13 46 46 H 1.08994 * 109.47140 * 59.99999 * 17 15 13 47 47 H 0.97005 * 120.00361 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 4.9021 -1.3694 0.0110 7 6 2.3539 -1.1320 -0.0007 8 6 1.9591 -2.5864 -0.0003 9 7 1.8295 -3.0589 -1.3852 10 6 1.4453 -4.4763 -1.4240 11 6 1.3210 -4.9313 -2.8795 12 6 0.9203 -6.4074 -2.9199 13 7 0.8007 -6.8429 -4.3135 14 6 1.9653 -7.3931 -5.0114 15 6 -0.3806 -6.7374 -4.9536 16 8 -1.3449 -6.2823 -4.3757 17 6 -0.5037 -7.1861 -6.3870 18 16 -2.2000 -6.9188 -6.9593 19 6 -2.0619 -7.5114 -8.6130 20 1 -1.1167 -7.8891 -8.9741 21 6 -3.1680 -7.4937 -9.4511 22 7 -4.3202 -7.0339 -9.0108 23 14 -3.0218 -8.1227 -11.2040 24 1 -1.6312 -8.5814 -11.4509 25 1 -3.9604 -9.2562 -11.4030 26 1 -3.3576 -7.0297 -12.1516 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 5.2201 -1.5548 -1.0150 31 1 5.6637 -0.7851 0.5274 32 1 4.7628 -2.3202 0.5255 33 1 1.0054 -2.7038 0.5144 34 1 2.7232 -3.1702 0.5128 35 1 1.1734 -2.4918 -1.9010 36 1 2.2061 -5.0729 -0.9209 37 1 0.4882 -4.6072 -0.9190 38 1 0.5603 -4.3347 -3.3831 39 1 2.2783 -4.8004 -3.3841 40 1 1.6806 -7.0042 -2.4163 41 1 -0.0372 -6.5378 -2.4155 42 1 1.9983 -8.4731 -4.8677 43 1 1.8899 -7.1704 -6.0758 44 1 2.8744 -6.9453 -4.6101 45 1 0.1842 -6.6120 -7.0078 46 1 -0.2593 -8.2459 -6.4583 47 1 -5.0932 -7.0212 -9.5967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569183250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = 15.165974 kcal Electronic energy + Delta-G solvation = -26165.359671 eV Core-core repulsion = 22284.548924 eV Total energy + Delta-G solvation = -3880.810747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.21386 -39.51211 -37.50023 -35.76250 -34.79990 -33.87412 -32.43673 -32.01831 -29.41032 -28.99764 -28.27590 -27.04660 -26.00862 -25.47960 -23.87928 -21.93726 -21.57461 -20.46414 -19.17558 -17.96558 -17.68637 -17.24175 -16.75044 -16.20235 -16.01235 -15.54203 -14.98001 -14.81918 -14.79463 -14.63521 -13.98672 -13.82421 -13.74045 -13.61067 -13.46801 -13.21880 -13.07318 -12.96775 -12.70197 -12.56635 -12.49473 -12.46288 -12.18870 -12.06946 -11.70847 -11.60147 -11.24540 -11.07879 -11.02486 -10.84409 -10.74082 -10.20054 -9.80331 -9.53245 -9.36809 -9.08204 -8.80431 -8.54164 -8.23120 -6.50960 -6.22609 -3.93122 1.14904 1.84379 2.78955 2.93595 3.04752 3.20820 3.25708 3.30556 3.59505 3.82359 3.96821 4.11146 4.19480 4.44442 4.57155 4.72398 4.87086 4.91639 4.97276 5.00444 5.05211 5.12008 5.12563 5.13467 5.13833 5.19856 5.26939 5.30035 5.38831 5.39805 5.45768 5.52854 5.56512 5.60643 5.62365 5.71005 5.81935 5.89739 5.99923 6.10980 6.13174 6.59081 6.68405 6.96518 7.52470 7.59202 7.98927 8.34582 8.55350 9.22863 10.84854 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.001732 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.399951 B =16164.062292 C =16895.699974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.025 3.975 3 N -0.368 5.368 4 O 0.094 5.906 5 C -0.011 4.011 6 C -0.071 4.071 7 C -0.203 4.203 8 C 0.139 3.861 9 N -0.686 5.686 10 C 0.063 3.937 11 C -0.133 4.133 12 C 0.120 3.880 13 N -0.625 5.625 14 C 0.081 3.919 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.150 4.150 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.345 0.655 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.452 7.040 20.282 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 N -0.074 5.074 4 O 0.030 5.970 5 C -0.076 4.076 6 C -0.128 4.128 7 C -0.208 4.208 8 C 0.010 3.990 9 N -0.317 5.317 10 C -0.067 4.067 11 C -0.172 4.172 12 C -0.003 4.003 13 N -0.361 5.361 14 C -0.063 4.063 15 C 0.320 3.680 16 O -0.391 6.391 17 C -0.301 4.301 18 S 0.163 5.837 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.163 0.837 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.294 8.925 21.029 29.266 hybrid contribution 0.259 -1.614 -1.618 2.300 sum 18.553 7.311 19.411 27.828 Atomic orbital electron populations 1.20182 0.85962 1.04000 1.03387 1.23493 0.98920 0.88574 1.02418 1.73857 0.89261 1.23905 1.20423 1.84807 1.21673 1.22619 1.67872 1.24290 0.98331 0.83639 1.01300 1.20333 0.89744 0.98314 1.04446 1.20805 0.91753 0.97010 1.11187 1.20062 1.00444 0.88043 0.90487 1.60498 1.55246 1.03586 1.12406 1.21886 0.99165 0.88507 0.97092 1.21926 1.02659 0.96690 0.95964 1.21291 1.02498 0.93932 0.82620 1.47851 1.10600 1.64735 1.12893 1.21759 0.87872 0.98451 0.98192 1.20353 0.81821 0.77459 0.88325 1.90686 1.36975 1.43804 1.67595 1.23556 1.07874 1.03990 0.94648 1.85387 1.02022 1.83340 1.12908 1.22899 0.99402 1.48456 0.97472 0.90885 1.24998 0.94491 0.94991 0.99159 1.70029 1.00527 1.43368 1.36354 0.86116 0.78310 0.78532 0.82531 1.19606 1.20564 1.20565 0.90133 0.90264 0.90154 0.88978 0.90089 0.89110 0.93713 0.89731 0.83677 0.90822 0.94689 0.91271 0.91030 0.90889 0.89957 0.92758 0.90697 0.91369 0.89269 0.89295 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.39 36.00 0.37 -0.22 16 2 C 0.03 0.25 7.33 -82.10 -0.60 -0.35 16 3 N -0.37 -4.32 12.07 33.42 0.40 -3.92 16 4 O 0.09 0.99 11.20 17.18 0.19 1.18 16 5 C -0.01 -0.09 7.49 -35.30 -0.26 -0.36 16 6 C -0.07 -0.32 10.30 36.00 0.37 0.05 16 7 C -0.20 -1.76 5.83 -104.42 -0.61 -2.37 16 8 C 0.14 0.98 6.01 -4.98 -0.03 0.95 16 9 N -0.69 -5.59 6.49 -115.05 -0.75 -6.34 16 10 C 0.06 0.50 5.69 -3.82 -0.02 0.48 16 11 C -0.13 -1.34 5.80 -26.73 -0.16 -1.49 16 12 C 0.12 1.32 5.41 -4.04 -0.02 1.30 16 13 N -0.62 -8.47 2.87 -181.58 -0.52 -8.99 16 14 C 0.08 0.80 10.24 59.85 0.61 1.42 16 15 C 0.53 9.97 7.69 -10.99 -0.08 9.88 16 16 O -0.52 -11.56 15.44 5.55 0.09 -11.48 16 17 C -0.15 -3.04 4.71 36.00 0.17 -2.87 16 18 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 19 C -0.53 -15.18 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.30 7.44 -51.93 -0.39 -0.09 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.49 7.44 -51.93 -0.39 0.10 16 35 H 0.35 3.10 8.72 -39.29 -0.34 2.76 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 41 H 0.08 1.05 7.42 -51.93 -0.39 0.67 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 44 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 45 H 0.09 1.67 7.40 -51.92 -0.38 1.29 16 46 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 409.40 15.07 6.17 6.17 Total: -1.00 -35.72 409.40 -8.65 -44.37 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.67 Total: -1.53 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.06 Total: -6.48 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.13 Total: -44.64 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.28 Total: -10.30 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.72 -8.65 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569183250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.536 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds