Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30180 * 126.80257 * 2 1 4 4 O 1.20921 * 111.60526 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 N 1.46899 * 109.47107 * 269.67438 * 8 7 5 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46950 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47071 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47301 * 179.97438 * 12 11 10 14 14 C 1.46497 * 119.99866 * 90.00086 * 13 12 11 15 15 C 1.34775 * 120.00608 * 270.00440 * 13 12 11 16 16 O 1.21284 * 119.99479 * 359.97438 * 15 13 12 17 17 C 1.50699 * 120.00241 * 180.02562 * 15 13 12 18 18 S 1.81008 * 109.46894 * 179.97438 * 17 15 13 19 19 C 1.76204 * 99.99694 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00242 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99688 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00300 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99831 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47193 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46931 * 120.00387 * 23 21 19 26 26 H 1.48500 * 109.46921 * 240.00031 * 23 21 19 27 27 H 1.08998 * 109.47175 * 269.97179 * 1 2 3 28 28 H 1.09001 * 109.47365 * 29.97178 * 1 2 3 29 29 H 1.09004 * 109.47013 * 149.97293 * 1 2 3 30 30 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 31 31 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 32 32 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 33 33 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 34 34 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 35 35 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 36 36 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 37 37 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 38 38 H 1.09005 * 109.47424 * 300.00229 * 11 10 9 39 39 H 1.09004 * 109.47266 * 59.99979 * 11 10 9 40 40 H 1.08995 * 109.47051 * 300.00167 * 12 11 10 41 41 H 1.09003 * 109.46901 * 60.00330 * 12 11 10 42 42 H 1.08997 * 109.47390 * 89.99926 * 14 13 12 43 43 H 1.09000 * 109.47699 * 210.00108 * 14 13 12 44 44 H 1.08999 * 109.47273 * 330.00170 * 14 13 12 45 45 H 1.08998 * 109.47212 * 299.99291 * 17 15 13 46 46 H 1.08994 * 109.47140 * 59.99999 * 17 15 13 47 47 H 0.97005 * 120.00361 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 4.9021 -1.3694 0.0110 7 6 2.3539 -1.1320 -0.0007 8 6 1.9591 -2.5864 -0.0003 9 7 1.8295 -3.0589 -1.3852 10 6 1.4453 -4.4763 -1.4240 11 6 1.3210 -4.9313 -2.8795 12 6 0.9203 -6.4074 -2.9199 13 7 0.8007 -6.8429 -4.3135 14 6 1.9653 -7.3931 -5.0114 15 6 -0.3806 -6.7374 -4.9536 16 8 -1.3449 -6.2823 -4.3757 17 6 -0.5037 -7.1861 -6.3870 18 16 -2.2000 -6.9188 -6.9593 19 6 -2.0619 -7.5114 -8.6130 20 1 -1.1167 -7.8891 -8.9741 21 6 -3.1680 -7.4937 -9.4511 22 7 -4.3202 -7.0339 -9.0108 23 14 -3.0218 -8.1227 -11.2040 24 1 -1.6312 -8.5814 -11.4509 25 1 -3.9604 -9.2562 -11.4030 26 1 -3.3576 -7.0297 -12.1516 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 5.2201 -1.5548 -1.0150 31 1 5.6637 -0.7851 0.5274 32 1 4.7628 -2.3202 0.5255 33 1 1.0054 -2.7038 0.5144 34 1 2.7232 -3.1702 0.5128 35 1 1.1734 -2.4918 -1.9010 36 1 2.2061 -5.0729 -0.9209 37 1 0.4882 -4.6072 -0.9190 38 1 0.5603 -4.3347 -3.3831 39 1 2.2783 -4.8004 -3.3841 40 1 1.6806 -7.0042 -2.4163 41 1 -0.0372 -6.5378 -2.4155 42 1 1.9983 -8.4731 -4.8677 43 1 1.8899 -7.1704 -6.0758 44 1 2.8744 -6.9453 -4.6101 45 1 0.1842 -6.6120 -7.0078 46 1 -0.2593 -8.2459 -6.4583 47 1 -5.0932 -7.0212 -9.5967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569183250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = -9.196301 kcal Electronic energy + Delta-G solvation = -26166.416099 eV Core-core repulsion = 22284.548924 eV Total energy + Delta-G solvation = -3881.867175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.92969 -40.83121 -38.19898 -36.84777 -35.60825 -34.59078 -34.50975 -32.89880 -30.66770 -29.69726 -28.95229 -27.84595 -27.69575 -26.76602 -24.75916 -22.62449 -22.34699 -21.09887 -20.58470 -19.51907 -18.70364 -18.07273 -17.92009 -17.19379 -16.96757 -16.88587 -16.71705 -15.95082 -15.63098 -15.47412 -15.36715 -14.59751 -14.52829 -14.40119 -14.35189 -14.24422 -14.05496 -13.85689 -13.60298 -13.53649 -13.30585 -13.24033 -13.15886 -12.99855 -12.91540 -12.82419 -12.69326 -12.56593 -12.35853 -11.90724 -11.73185 -11.61074 -11.16379 -10.91190 -10.85324 -10.26684 -10.17523 -9.65496 -9.42080 -8.67788 -8.35330 -6.13567 0.49727 1.14864 1.26719 1.41109 1.46689 1.57752 1.59939 2.16307 2.21975 2.27451 2.98832 3.16853 3.26420 3.32063 3.52127 3.73529 3.86786 3.97798 4.10437 4.17928 4.24811 4.30180 4.37110 4.40759 4.49219 4.51341 4.54329 4.56070 4.62508 4.70722 4.73076 4.73798 4.78495 4.82656 4.86030 4.97418 4.98005 5.12315 5.15962 5.27053 5.29844 5.41441 5.64667 6.01427 6.19388 6.26724 6.30746 7.05992 7.17768 7.30077 8.74128 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.001732 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.399951 B =16164.062292 C =16895.699974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 N -0.404 5.404 4 O 0.078 5.922 5 C -0.009 4.009 6 C -0.070 4.070 7 C -0.214 4.214 8 C 0.144 3.856 9 N -0.689 5.689 10 C 0.071 3.929 11 C -0.122 4.122 12 C 0.117 3.883 13 N -0.611 5.611 14 C 0.071 3.929 15 C 0.528 3.472 16 O -0.566 6.566 17 C -0.124 4.124 18 S -0.155 6.155 19 C -0.544 4.544 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.336 0.664 36 H 0.099 0.901 37 H 0.029 0.971 38 H 0.031 0.969 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.672 5.256 20.374 30.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.145 4.145 3 N -0.114 5.114 4 O 0.017 5.983 5 C -0.073 4.073 6 C -0.127 4.127 7 C -0.219 4.219 8 C 0.015 3.985 9 N -0.320 5.320 10 C -0.059 4.059 11 C -0.161 4.161 12 C -0.005 4.005 13 N -0.345 5.345 14 C -0.071 4.071 15 C 0.316 3.684 16 O -0.444 6.444 17 C -0.275 4.275 18 S 0.072 5.928 19 C -0.692 4.692 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.200 1.200 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.153 0.847 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.099 0.901 40 H 0.134 0.866 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.595 7.125 21.146 31.053 hybrid contribution -0.606 -1.063 -1.541 1.968 sum 20.989 6.062 19.605 29.354 Atomic orbital electron populations 1.20252 0.84893 1.04119 1.04229 1.23962 0.99912 0.88948 1.01712 1.73843 0.89946 1.25171 1.22413 1.84757 1.21316 1.23969 1.68286 1.25022 0.99806 0.82892 0.99602 1.20541 0.88182 0.98736 1.05229 1.21034 0.91687 0.97484 1.11649 1.20109 1.01230 0.87224 0.89933 1.60536 1.54874 1.03560 1.13040 1.21832 0.99797 0.88698 0.95544 1.21790 1.01626 0.95414 0.97287 1.21529 1.02789 0.95224 0.80984 1.47877 1.09780 1.63019 1.13797 1.22092 0.87405 0.99727 0.97868 1.20140 0.83009 0.77535 0.87761 1.90669 1.39107 1.46362 1.68311 1.23380 1.02657 1.05372 0.96081 1.85572 1.09093 1.84028 1.14119 1.23227 1.00024 1.48407 0.97555 0.89903 1.26148 0.93912 0.94950 1.04261 1.70194 1.01544 1.44754 1.38312 0.84895 0.79075 0.77926 0.75989 1.17913 1.19895 1.19984 0.88878 0.90698 0.89441 0.88390 0.88645 0.87267 0.93459 0.87684 0.84664 0.88251 0.95284 0.94989 0.90136 0.86585 0.92181 0.90980 0.91140 0.87894 0.87621 0.87560 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.39 71.23 0.74 -0.45 16 2 C 0.01 0.27 7.33 43.57 0.32 0.59 16 3 N -0.40 -9.77 12.07 -49.55 -0.60 -10.37 16 4 O 0.08 1.65 11.20 71.66 0.80 2.46 16 5 C -0.01 -0.14 7.49 25.04 0.19 0.05 16 6 C -0.07 -0.45 10.30 71.24 0.73 0.28 16 7 C -0.21 -3.50 5.83 -19.73 -0.12 -3.61 16 8 C 0.14 1.74 6.01 85.56 0.51 2.26 16 9 N -0.69 -10.05 6.49 -517.92 -3.36 -13.41 16 10 C 0.07 0.95 5.69 86.30 0.49 1.44 16 11 C -0.12 -2.25 5.80 30.59 0.18 -2.07 16 12 C 0.12 2.31 5.41 86.38 0.47 2.78 16 13 N -0.61 -15.30 2.87 -846.78 -2.43 -17.73 16 14 C 0.07 1.14 10.24 127.77 1.31 2.45 16 15 C 0.53 19.70 7.69 87.66 0.67 20.38 16 16 O -0.57 -26.28 15.44 -3.04 -0.05 -26.32 16 17 C -0.12 -4.96 4.71 71.24 0.34 -4.63 16 18 S -0.16 -8.70 20.57 -56.49 -1.16 -9.86 16 19 C -0.54 -31.18 9.50 67.95 0.65 -30.53 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 23 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 24 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 0.32 7.44 -2.39 -0.02 0.31 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.11 0.85 7.44 -2.39 -0.02 0.83 16 35 H 0.34 5.92 8.72 -89.69 -0.78 5.14 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.12 1.35 8.07 -2.39 -0.02 1.33 16 41 H 0.06 1.49 7.42 -2.39 -0.02 1.48 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.23 6.44 -2.39 -0.02 1.22 16 44 H 0.10 1.01 8.07 -2.39 -0.02 0.99 16 45 H 0.11 3.86 7.40 -2.40 -0.02 3.84 16 46 H 0.11 3.86 8.11 -2.40 -0.02 3.84 16 47 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -82.25 409.40 2.65 -79.61 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.19 Total: 15.86 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 6.95 Total: -9.92 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -6.11 Total: -97.43 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.76 Total: -23.87 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -82.25 2.65 -79.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569183250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.411 kcal (2) G-P(sol) polarization free energy of solvation -82.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds