Wall clock time and date at job start Sat Apr 11 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.78049 * 2 1 4 4 N 1.46497 * 109.47168 * 298.22385 * 3 2 1 5 5 C 1.36937 * 119.99999 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.38816 * 119.99785 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99527 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00503 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47179 * 89.99600 * 9 7 5 11 11 H 1.48500 * 109.47003 * 209.99985 * 9 7 5 12 12 H 1.48499 * 109.46578 * 329.99666 * 9 7 5 13 13 C 1.55149 * 110.72172 * 123.24217 * 2 1 3 14 14 C 1.55133 * 101.48761 * 82.69962 * 13 2 1 15 15 N 1.47421 * 104.72247 * 37.29021 * 14 13 2 16 16 C 1.34779 * 125.65000 * 155.82234 * 15 14 13 17 17 O 1.21556 * 119.99416 * 5.00281 * 16 15 14 18 18 C 1.47843 * 120.00326 * 185.00297 * 16 15 14 19 19 C 1.40599 * 120.27748 * 352.10694 * 18 16 15 20 20 N 1.30819 * 121.51852 * 180.02562 * 19 18 16 21 21 C 1.33756 * 121.79669 * 359.93385 * 20 19 18 22 22 N 1.33895 * 120.62267 * 180.02562 * 21 20 19 23 23 C 1.31328 * 119.84993 * 180.02562 * 22 21 20 24 24 C 1.39758 * 120.77405 * 0.02562 * 23 22 21 25 25 N 1.31305 * 120.55867 * 359.95836 * 24 23 22 26 26 C 1.33668 * 119.70189 * 0.02562 * 25 24 23 27 27 C 1.38906 * 120.27693 * 172.08632 * 18 16 15 28 28 C 1.47025 * 108.70656 * 335.55870 * 15 14 13 29 29 H 1.09001 * 109.46496 * 181.78635 * 1 2 3 30 30 H 1.09000 * 109.46651 * 301.78142 * 1 2 3 31 31 H 1.08991 * 109.47277 * 61.78094 * 1 2 3 32 32 H 1.09006 * 109.46580 * 58.21706 * 3 2 1 33 33 H 1.08998 * 109.47469 * 178.21579 * 3 2 1 34 34 H 0.96999 * 120.00237 * 359.97438 * 4 3 2 35 35 H 0.97003 * 120.00269 * 179.97438 * 8 7 5 36 36 H 1.09007 * 111.00141 * 200.93203 * 13 2 1 37 37 H 1.09001 * 111.00550 * 324.74738 * 13 2 1 38 38 H 1.08999 * 110.49277 * 278.45120 * 14 13 2 39 39 H 1.08994 * 110.34566 * 156.06053 * 14 13 2 40 40 H 1.07997 * 119.23711 * 359.97438 * 19 18 16 41 41 H 1.07999 * 119.60973 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.72047 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.99812 * 0.04117 * 27 18 16 44 44 H 1.08999 * 109.88369 * 120.70122 * 28 15 14 45 45 H 1.09001 * 109.88280 * 241.86972 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 7 1.6354 2.1188 -1.2170 5 6 2.0020 3.4197 -1.4372 6 1 2.6133 3.9383 -0.7135 7 6 1.5879 4.0717 -2.5906 8 7 1.9399 5.3222 -2.8020 9 14 0.5301 3.1749 -3.8420 10 1 -0.9038 3.3748 -3.5120 11 1 0.8055 3.7122 -5.1987 12 1 0.8479 1.7246 -3.8101 13 6 2.0790 -0.7955 1.2137 14 6 2.0076 -2.2525 0.6859 15 7 2.3716 -2.1531 -0.7392 16 6 2.8850 -3.1476 -1.4901 17 8 2.9994 -4.2642 -1.0236 18 6 3.3089 -2.8805 -2.8811 19 6 3.0292 -1.6404 -3.4816 20 7 3.3925 -1.3783 -4.7107 21 6 4.0482 -2.2732 -5.4578 22 7 4.4092 -1.9799 -6.7134 23 6 5.0521 -2.8702 -7.4336 24 6 5.3657 -4.1256 -6.9056 25 7 5.0231 -4.4378 -5.6771 26 6 4.3684 -3.5471 -4.9256 27 6 3.9871 -3.8525 -3.6054 28 6 2.0760 -0.7911 -1.2074 29 1 -0.3632 -1.0272 0.0320 30 1 -0.3632 0.5413 0.8736 31 1 -0.3633 0.4859 -0.9054 32 1 1.6957 1.9622 0.8736 33 1 3.1621 1.4058 0.0320 34 1 1.0861 1.6531 -1.8668 35 1 1.6509 5.7778 -3.6081 36 1 3.1063 -0.5073 1.4373 37 1 1.4401 -0.6658 2.0872 38 1 0.9976 -2.6480 0.7927 39 1 2.7209 -2.8831 1.2165 40 1 2.5016 -0.8871 -2.9154 41 1 5.3412 -2.6296 -8.4460 42 1 5.8946 -4.8451 -7.5132 43 1 4.2147 -4.8138 -3.1690 44 1 2.9868 -0.3205 -1.5777 45 1 1.3262 -0.8254 -1.9978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569673347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:52 Heat of formation + Delta-G solvation = 71.887308 kcal Electronic energy + Delta-G solvation = -29700.854891 eV Core-core repulsion = 25719.352565 eV Total energy + Delta-G solvation = -3981.502326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.96804 -41.69884 -39.73601 -39.07418 -36.62397 -36.21603 -34.47884 -33.37218 -33.03024 -32.26190 -30.56091 -28.12342 -27.71264 -27.24574 -26.19204 -24.85123 -24.15672 -23.32661 -21.66718 -20.84734 -20.59411 -19.55622 -19.13259 -18.96338 -17.48248 -17.25410 -16.86067 -16.64976 -16.60417 -16.32937 -15.90879 -15.80973 -15.46539 -15.24854 -14.73033 -14.66784 -14.60170 -14.41749 -14.00426 -13.81627 -13.59737 -13.39708 -13.21954 -13.08865 -12.94156 -12.92449 -12.85116 -12.74666 -12.23429 -12.12680 -11.87006 -11.63245 -11.50456 -11.44417 -11.26343 -10.94186 -10.70621 -10.42155 -9.97325 -9.85846 -9.24977 -7.99878 -5.31720 -1.33860 -1.01580 0.45588 1.11928 1.37646 1.42531 1.47985 1.60761 1.87653 2.33014 2.49940 2.71585 2.74947 2.79048 3.07343 3.24185 3.32796 3.35877 3.44085 3.58401 3.68979 3.73835 3.88705 3.89368 4.13370 4.20877 4.26117 4.27200 4.31970 4.40914 4.48840 4.68675 4.69587 4.75644 4.84104 4.97787 5.07431 5.10864 5.14247 5.16889 5.22920 5.25882 5.47906 5.74655 5.80951 6.14897 6.23486 6.24152 6.68225 6.77296 7.12372 7.88404 8.05401 9.21814 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.004341 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.177770 B = 6447.925174 C = 9091.217795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 C 0.169 3.831 4 N -0.754 5.754 5 C -0.225 4.225 6 H 0.060 0.940 7 C -0.058 4.058 8 N -0.984 5.984 9 Si 0.938 3.062 10 H -0.275 1.275 11 H -0.305 1.305 12 H -0.248 1.248 13 C -0.109 4.109 14 C 0.107 3.893 15 N -0.601 5.601 16 C 0.585 3.415 17 O -0.556 6.556 18 C -0.183 4.183 19 C 0.148 3.852 20 N -0.488 5.488 21 C 0.248 3.752 22 N -0.465 5.465 23 C 0.133 3.867 24 C 0.096 3.904 25 N -0.427 5.427 26 C 0.004 3.996 27 C 0.042 3.958 28 C 0.087 3.913 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.027 0.973 34 H 0.365 0.635 35 H 0.255 0.745 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.205 0.795 41 H 0.235 0.765 42 H 0.240 0.760 43 H 0.175 0.825 44 H 0.078 0.922 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 -24.224 -1.643 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 C 0.042 3.958 4 N -0.400 5.400 5 C -0.356 4.356 6 H 0.078 0.922 7 C -0.250 4.250 8 N -0.635 5.635 9 Si 0.766 3.234 10 H -0.201 1.201 11 H -0.232 1.232 12 H -0.173 1.173 13 C -0.147 4.147 14 C -0.014 4.014 15 N -0.333 5.333 16 C 0.374 3.626 17 O -0.437 6.437 18 C -0.190 4.190 19 C -0.027 4.027 20 N -0.197 5.197 21 C 0.010 3.990 22 N -0.180 5.180 23 C -0.047 4.047 24 C -0.082 4.082 25 N -0.141 5.141 26 C -0.120 4.120 27 C 0.014 3.986 28 C -0.035 4.035 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.199 0.801 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.221 0.779 41 H 0.251 0.749 42 H 0.256 0.744 43 H 0.192 0.808 44 H 0.096 0.904 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.332 -23.809 -1.557 24.091 hybrid contribution -0.301 -0.228 -0.878 0.956 sum 3.031 -24.037 -2.435 24.349 Atomic orbital electron populations 1.21801 0.92054 1.02552 1.02747 1.21798 0.97289 0.93732 0.94562 1.20818 0.96586 0.89709 0.88640 1.42698 1.63330 1.10971 1.23038 1.19014 1.25012 0.88375 1.03242 0.92168 1.25365 1.02673 0.96592 1.00345 1.69864 1.52467 1.12441 1.28710 0.85653 0.79422 0.79701 0.78595 1.20109 1.23240 1.17286 1.22927 1.03188 0.91528 0.97090 1.22552 1.01957 0.98373 0.78483 1.48349 1.61294 1.10847 1.12811 1.17393 0.77413 0.83582 0.84242 1.90773 1.57226 1.22205 1.73455 1.21012 1.05043 0.96515 0.96470 1.25189 0.92215 0.95592 0.89731 1.67624 1.11756 1.33308 1.07005 1.20452 0.95802 0.89828 0.92935 1.68417 1.10605 1.35108 1.03870 1.25367 0.88244 0.89101 1.02004 1.25240 0.94456 0.97421 0.91129 1.68696 1.07339 1.31135 1.06955 1.20178 1.01943 0.93129 0.96799 1.21871 0.87852 0.99202 0.89648 1.22766 1.00719 0.81748 0.98277 0.90704 0.90747 0.93669 0.94166 0.95497 0.80114 0.93561 0.89846 0.86498 0.89316 0.89665 0.77896 0.74881 0.74365 0.80778 0.90392 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.25 71.98 0.59 -2.26 16 2 C -0.07 -1.68 0.61 -50.99 -0.03 -1.72 16 3 C 0.17 5.46 5.07 86.38 0.44 5.90 16 4 N -0.75 -32.18 4.96 -343.45 -1.70 -33.88 16 5 C -0.23 -12.37 10.47 84.03 0.88 -11.49 16 6 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 7 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 8 N -0.98 -63.11 13.97 21.65 0.30 -62.81 16 9 Si 0.94 45.55 27.74 68.60 1.90 47.45 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 12 H -0.25 -10.80 6.52 99.48 0.65 -10.16 16 13 C -0.11 -1.82 6.04 32.06 0.19 -1.62 16 14 C 0.11 1.92 6.58 86.93 0.57 2.49 16 15 N -0.60 -14.03 3.32 -827.34 -2.75 -16.78 16 16 C 0.59 15.85 7.81 86.79 0.68 16.52 16 17 O -0.56 -17.20 16.71 -3.89 -0.07 -17.27 16 18 C -0.18 -5.03 5.88 -20.00 -0.12 -5.14 16 19 C 0.15 4.48 9.75 85.42 0.83 5.32 16 20 N -0.49 -17.12 10.39 -192.75 -2.00 -19.13 16 21 C 0.25 7.72 7.60 134.96 1.03 8.75 16 22 N -0.46 -12.64 10.55 -193.11 -2.04 -14.68 16 23 C 0.13 1.85 11.21 85.14 0.95 2.80 16 24 C 0.10 1.10 11.22 85.14 0.96 2.05 16 25 N -0.43 -8.77 10.46 -187.98 -1.97 -10.74 16 26 C 0.00 0.10 6.59 40.34 0.27 0.36 16 27 C 0.04 1.09 9.68 23.05 0.22 1.31 16 28 C 0.09 2.16 3.47 86.73 0.30 2.46 16 29 H 0.07 1.27 7.42 -2.39 -0.02 1.25 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.14 7.13 -2.39 -0.02 1.12 16 32 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.03 0.91 8.13 -2.39 -0.02 0.89 16 34 H 0.37 14.92 4.25 -92.71 -0.39 14.52 16 35 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.08 1.42 8.04 -2.38 -0.02 1.40 16 37 H 0.12 1.39 8.04 -2.39 -0.02 1.37 16 38 H 0.09 1.36 7.69 -2.39 -0.02 1.35 16 39 H 0.08 1.51 8.09 -2.39 -0.02 1.49 16 40 H 0.21 5.97 2.73 -7.76 -0.02 5.95 16 41 H 0.24 0.65 8.06 -2.91 -0.02 0.63 16 42 H 0.24 -0.10 8.06 -2.91 -0.02 -0.12 16 43 H 0.17 4.00 7.72 -2.91 -0.02 3.98 16 44 H 0.08 2.20 6.34 -2.39 -0.02 2.18 16 45 H 0.08 2.05 6.51 -2.39 -0.02 2.03 16 Total: -1.00 -83.23 365.43 0.50 -82.73 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.58 Total: 22.30 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 8.23 Total: 22.80 kcal Atomic # 7 Polarization: -147.85 SS G_CDS: -10.16 Total: -158.01 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.07 Total: -17.27 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Total: -83.23 0.50 -82.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569673347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.618 kcal (2) G-P(sol) polarization free energy of solvation -83.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds