Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37699 * 120.01697 * 2 1 4 4 C 1.39441 * 120.03284 * 179.97438 * 3 2 1 5 5 C 1.48362 * 119.97809 * 179.97438 * 4 3 2 6 6 N 1.34090 * 126.67700 * 359.71026 * 5 4 3 7 7 N 1.28985 * 107.26001 * 179.83445 * 6 5 4 8 8 N 1.28727 * 108.95827 * 0.43369 * 7 6 5 9 9 H 0.96997 * 125.33639 * 179.73997 * 8 7 6 10 10 N 1.28875 * 109.32807 * 359.72138 * 8 7 6 11 11 C 1.39482 * 120.05311 * 0.02562 * 4 3 2 12 12 C 1.37672 * 120.02589 * 0.25450 * 11 4 3 13 13 C 1.39679 * 120.01154 * 179.97438 * 2 1 3 14 14 C 1.47728 * 120.02808 * 0.02562 * 13 2 1 15 15 O 1.21567 * 120.00397 * 304.37085 * 14 13 2 16 16 N 1.34783 * 119.99961 * 124.37482 * 14 13 2 17 17 C 1.46925 * 120.62930 * 3.58315 * 16 14 13 18 18 C 1.52765 * 109.00537 * 233.58590 * 17 16 14 19 19 C 1.53040 * 109.38080 * 305.58567 * 18 17 16 20 20 C 1.53036 * 109.53706 * 61.24555 * 19 18 17 21 21 H 1.09004 * 109.50278 * 58.58390 * 20 19 18 22 22 C 1.50703 * 109.52260 * 178.66638 * 20 19 18 23 23 H 1.08000 * 119.99979 * 355.60255 * 22 20 19 24 24 C 1.37882 * 119.99875 * 175.60807 * 22 20 19 25 25 N 1.31511 * 120.00274 * 5.35641 * 24 22 20 26 26 Si 1.86794 * 119.99815 * 185.34861 * 24 22 20 27 27 H 1.48501 * 109.47078 * 95.00075 * 26 24 22 28 28 H 1.48503 * 109.47245 * 214.99931 * 26 24 22 29 29 H 1.48495 * 109.47580 * 335.00466 * 26 24 22 30 30 C 1.46928 * 120.62996 * 183.86505 * 16 14 13 31 31 H 1.09000 * 109.47420 * 85.14584 * 1 2 3 32 32 H 1.08999 * 109.47337 * 205.15378 * 1 2 3 33 33 H 1.09004 * 109.46623 * 325.14899 * 1 2 3 34 34 H 1.08007 * 119.98916 * 0.02562 * 3 2 1 35 35 H 1.07998 * 119.98728 * 179.97438 * 11 4 3 36 36 H 1.08005 * 120.00850 * 179.74354 * 12 11 4 37 37 H 1.08997 * 109.58655 * 353.41343 * 17 16 14 38 38 H 1.08992 * 109.58966 * 113.84580 * 17 16 14 39 39 H 1.09003 * 109.56133 * 185.55299 * 18 17 16 40 40 H 1.08998 * 109.35890 * 65.50121 * 18 17 16 41 41 H 1.08998 * 109.46330 * 301.22238 * 19 18 17 42 42 H 1.09007 * 109.44733 * 181.25357 * 19 18 17 43 43 H 0.96998 * 120.00290 * 180.02562 * 25 24 22 44 44 H 1.09009 * 109.58392 * 246.15586 * 30 16 14 45 45 H 1.08999 * 109.58844 * 6.57514 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1923 0.0000 4 6 3.5902 1.1927 0.0005 5 6 4.3312 2.4780 0.0000 6 7 3.7995 3.7090 -0.0065 7 7 4.7785 4.5488 -0.0010 8 7 5.8886 3.8970 -0.0006 9 1 6.7730 4.2953 -0.0005 10 7 5.6407 2.6323 0.0000 11 6 4.2891 -0.0144 0.0005 12 6 3.6027 -1.2078 -0.0053 13 6 2.2056 -1.2095 0.0005 14 6 1.4679 -2.4894 0.0005 15 8 0.6490 -2.7191 0.8692 16 7 1.7027 -3.4026 -0.9626 17 6 2.7441 -3.1736 -1.9734 18 6 2.1304 -3.3280 -3.3638 19 6 1.4428 -4.6914 -3.4669 20 6 0.3210 -4.7785 -2.4295 21 1 -0.3951 -3.9745 -2.5995 22 6 -0.3771 -6.1084 -2.5532 23 1 -0.1010 -6.7919 -3.3426 24 6 -1.3683 -6.4525 -1.6587 25 7 -1.7780 -5.5804 -0.7636 26 14 -2.1295 -8.1573 -1.7184 27 1 -1.4374 -9.0426 -0.7476 28 1 -3.5699 -8.0689 -1.3680 29 1 -1.9863 -8.7158 -3.0868 30 6 0.9179 -4.6431 -1.0252 31 1 -0.3634 0.0870 -1.0240 32 1 -0.3634 -0.9302 0.4368 33 1 -0.3633 0.8434 0.5873 34 1 1.6559 2.1277 0.0004 35 1 5.3691 -0.0129 0.0005 36 1 4.1442 -2.1423 -0.0095 37 1 3.1456 -2.1663 -1.8626 38 1 3.5432 -3.9038 -1.8466 39 1 2.9138 -3.2576 -4.1184 40 1 1.3973 -2.5376 -3.5250 41 1 2.1713 -5.4805 -3.2811 42 1 1.0237 -4.8118 -4.4659 43 1 -2.4751 -5.8226 -0.1341 44 1 1.5652 -5.4958 -0.8195 45 1 0.1150 -4.6053 -0.2890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591861693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 109.602517 kcal Electronic energy + Delta-G solvation = -29358.287935 eV Core-core repulsion = 25378.421063 eV Total energy + Delta-G solvation = -3979.866872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.72549 -40.33757 -38.50813 -36.71231 -34.70681 -34.01678 -33.50303 -32.51246 -31.80581 -30.91129 -29.66328 -27.18544 -25.70134 -25.07916 -24.84549 -24.06949 -22.41373 -21.85568 -21.22217 -19.89828 -19.45903 -18.51530 -17.41593 -17.11615 -16.40388 -16.10093 -15.82444 -15.35689 -14.60306 -14.50610 -14.20866 -14.00368 -13.74544 -13.60055 -13.54143 -13.19594 -12.84794 -12.70876 -12.60066 -12.40598 -12.23215 -12.14848 -11.85620 -11.66577 -11.61209 -11.48683 -11.13235 -11.07419 -10.98258 -10.80960 -10.50889 -10.36048 -10.23187 -9.91855 -9.37913 -9.16820 -8.99342 -8.82998 -8.62966 -8.39707 -7.78580 -6.01727 -4.09284 0.39060 0.89677 1.25305 1.94185 2.04334 3.14638 3.30136 3.38207 3.40127 3.40629 3.55000 3.80867 3.92119 4.42020 4.73375 4.77342 4.82809 4.97431 5.12718 5.17399 5.27724 5.34542 5.37596 5.51117 5.55904 5.67939 5.76083 5.85842 5.89837 5.98287 6.03000 6.15292 6.18738 6.22247 6.29875 6.32042 6.56669 6.58765 6.66244 6.73599 6.84742 6.95805 7.11815 7.24130 7.62410 7.85711 7.85887 7.97594 8.19898 8.36893 8.77179 8.94069 9.55883 11.03676 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.002513 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.127325 B =11138.470097 C =11660.136847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.038 4.038 3 C -0.080 4.080 4 C -0.012 4.012 5 C 0.225 3.775 6 N -0.267 5.267 7 N -0.051 5.051 8 N -0.229 5.229 9 H 0.475 0.525 10 N -0.294 5.294 11 C -0.091 4.091 12 C -0.092 4.092 13 C -0.091 4.091 14 C 0.548 3.452 15 O -0.526 6.526 16 N -0.595 5.595 17 C 0.100 3.900 18 C -0.134 4.134 19 C -0.111 4.111 20 C 0.040 3.960 21 H 0.028 0.972 22 C -0.521 4.521 23 H 0.059 0.941 24 C 0.063 3.937 25 N -0.880 5.880 26 Si 0.891 3.109 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.274 1.274 30 C 0.111 3.889 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.264 0.736 44 H 0.044 0.956 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.217 16.398 0.173 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.039 4.039 3 C -0.100 4.100 4 C -0.015 4.015 5 C -0.055 4.055 6 N -0.140 5.140 7 N -0.046 5.046 8 N -0.075 5.075 9 H 0.329 0.671 10 N -0.145 5.145 11 C -0.111 4.111 12 C -0.111 4.111 13 C -0.096 4.096 14 C 0.335 3.665 15 O -0.404 6.404 16 N -0.327 5.327 17 C -0.023 4.023 18 C -0.172 4.172 19 C -0.149 4.149 20 C 0.021 3.979 21 H 0.046 0.954 22 C -0.559 4.559 23 H 0.077 0.923 24 C -0.140 4.140 25 N -0.517 5.517 26 Si 0.719 3.281 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.199 1.199 30 C -0.009 4.009 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.691 16.936 0.778 23.101 hybrid contribution 0.345 -1.064 -0.093 1.122 sum 16.036 15.872 0.685 22.573 Atomic orbital electron populations 1.21092 0.89746 1.05313 1.03016 1.19840 0.97010 0.90771 0.96263 1.20968 0.91998 0.98452 0.98579 1.17281 0.92096 0.86746 1.05385 1.23720 0.86279 0.94363 1.01096 1.76124 1.21787 0.98395 1.17672 1.78914 0.88509 1.22441 1.14725 1.47728 1.11513 1.02078 1.46164 0.67082 1.74953 1.17882 0.99562 1.22150 1.20983 1.00269 0.90501 0.99321 1.21193 0.92674 0.98398 0.98839 1.20276 0.93987 0.94321 1.00968 1.18196 0.82718 0.83080 0.82529 1.90793 1.34668 1.78207 1.36709 1.48485 1.36120 1.21035 1.27013 1.21779 0.90476 1.01125 0.88918 1.21871 0.99878 1.00072 0.95392 1.21631 0.98721 0.94040 1.00465 1.18962 0.91969 0.97626 0.89358 0.95397 1.21083 1.18959 1.01912 1.13991 0.92310 1.25041 0.96282 0.97071 0.95592 1.69872 1.29055 1.33649 1.19167 0.86590 0.78532 0.84702 0.78268 1.20670 1.21214 1.19929 1.22337 0.94574 0.80421 1.03567 0.90689 0.88513 0.91082 0.84228 0.84634 0.84582 0.90441 0.91881 0.92179 0.92149 0.93124 0.93032 0.92616 0.93777 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.68 36.00 0.35 -1.62 16 2 C -0.04 -0.54 5.91 -104.28 -0.62 -1.16 16 3 C -0.08 -0.98 9.35 -39.33 -0.37 -1.35 16 4 C -0.01 -0.14 5.88 -104.82 -0.62 -0.75 16 5 C 0.22 2.56 7.93 -156.27 -1.24 1.32 16 6 N -0.27 -3.17 12.22 32.15 0.39 -2.77 16 7 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 8 N -0.23 -1.57 7.90 60.35 0.48 -1.09 16 9 H 0.48 0.86 8.96 -340.36 -3.05 -2.19 16 10 N -0.29 -2.78 12.07 32.16 0.39 -2.39 16 11 C -0.09 -0.99 9.68 -39.32 -0.38 -1.37 16 12 C -0.09 -1.14 7.45 -39.24 -0.29 -1.43 16 13 C -0.09 -1.41 4.83 -104.93 -0.51 -1.91 16 14 C 0.55 10.73 6.50 -12.38 -0.08 10.65 16 15 O -0.53 -12.39 14.58 5.31 0.08 -12.31 16 16 N -0.59 -11.54 2.98 -174.19 -0.52 -12.06 16 17 C 0.10 1.53 5.55 -3.93 -0.02 1.50 16 18 C -0.13 -2.11 6.06 -26.83 -0.16 -2.28 16 19 C -0.11 -2.15 5.11 -26.69 -0.14 -2.28 16 20 C 0.04 0.96 2.29 -91.65 -0.21 0.75 16 21 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 22 C -0.52 -13.83 8.61 -34.44 -0.30 -14.13 16 23 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 24 C 0.06 1.71 5.23 -17.82 -0.09 1.62 16 25 N -0.88 -25.13 11.31 55.43 0.63 -24.50 16 26 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 30 C 0.11 2.61 5.34 -3.71 -0.02 2.59 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 1.75 5.57 -51.93 -0.29 1.46 16 33 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 34 H 0.14 1.55 7.87 -52.48 -0.41 1.14 16 35 H 0.14 1.20 7.87 -52.49 -0.41 0.79 16 36 H 0.14 1.48 7.48 -52.48 -0.39 1.09 16 37 H 0.08 1.01 4.83 -51.93 -0.25 0.76 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.04 1.03 8.14 -51.92 -0.42 0.61 16 45 H 0.13 3.45 5.04 -51.93 -0.26 3.19 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -32.57 367.73 -10.33 -42.90 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.42 Total: 0.26 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -4.69 Total: -9.85 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 2.18 Total: -42.50 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.57 -10.33 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591861693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.507 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds