Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37699 * 120.01697 * 2 1 4 4 C 1.39441 * 120.03284 * 179.97438 * 3 2 1 5 5 C 1.48362 * 119.97809 * 179.97438 * 4 3 2 6 6 N 1.34090 * 126.67700 * 359.71026 * 5 4 3 7 7 N 1.28985 * 107.26001 * 179.83445 * 6 5 4 8 8 N 1.28727 * 108.95827 * 0.43369 * 7 6 5 9 9 H 0.96997 * 125.33639 * 179.73997 * 8 7 6 10 10 N 1.28875 * 109.32807 * 359.72138 * 8 7 6 11 11 C 1.39482 * 120.05311 * 0.02562 * 4 3 2 12 12 C 1.37672 * 120.02589 * 0.25450 * 11 4 3 13 13 C 1.39679 * 120.01154 * 179.97438 * 2 1 3 14 14 C 1.47728 * 120.02808 * 0.02562 * 13 2 1 15 15 O 1.21567 * 120.00397 * 304.37085 * 14 13 2 16 16 N 1.34783 * 119.99961 * 124.37482 * 14 13 2 17 17 C 1.46925 * 120.62930 * 3.58315 * 16 14 13 18 18 C 1.52765 * 109.00537 * 233.58590 * 17 16 14 19 19 C 1.53040 * 109.38080 * 305.58567 * 18 17 16 20 20 C 1.53036 * 109.53706 * 61.24555 * 19 18 17 21 21 H 1.09004 * 109.50278 * 58.58390 * 20 19 18 22 22 C 1.50703 * 109.52260 * 178.66638 * 20 19 18 23 23 H 1.08000 * 119.99979 * 355.60255 * 22 20 19 24 24 C 1.37882 * 119.99875 * 175.60807 * 22 20 19 25 25 N 1.31511 * 120.00274 * 5.35641 * 24 22 20 26 26 Si 1.86794 * 119.99815 * 185.34861 * 24 22 20 27 27 H 1.48501 * 109.47078 * 95.00075 * 26 24 22 28 28 H 1.48503 * 109.47245 * 214.99931 * 26 24 22 29 29 H 1.48495 * 109.47580 * 335.00466 * 26 24 22 30 30 C 1.46928 * 120.62996 * 183.86505 * 16 14 13 31 31 H 1.09000 * 109.47420 * 85.14584 * 1 2 3 32 32 H 1.08999 * 109.47337 * 205.15378 * 1 2 3 33 33 H 1.09004 * 109.46623 * 325.14899 * 1 2 3 34 34 H 1.08007 * 119.98916 * 0.02562 * 3 2 1 35 35 H 1.07998 * 119.98728 * 179.97438 * 11 4 3 36 36 H 1.08005 * 120.00850 * 179.74354 * 12 11 4 37 37 H 1.08997 * 109.58655 * 353.41343 * 17 16 14 38 38 H 1.08992 * 109.58966 * 113.84580 * 17 16 14 39 39 H 1.09003 * 109.56133 * 185.55299 * 18 17 16 40 40 H 1.08998 * 109.35890 * 65.50121 * 18 17 16 41 41 H 1.08998 * 109.46330 * 301.22238 * 19 18 17 42 42 H 1.09007 * 109.44733 * 181.25357 * 19 18 17 43 43 H 0.96998 * 120.00290 * 180.02562 * 25 24 22 44 44 H 1.09009 * 109.58392 * 246.15586 * 30 16 14 45 45 H 1.08999 * 109.58844 * 6.57514 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1923 0.0000 4 6 3.5902 1.1927 0.0005 5 6 4.3312 2.4780 0.0000 6 7 3.7995 3.7090 -0.0065 7 7 4.7785 4.5488 -0.0010 8 7 5.8886 3.8970 -0.0006 9 1 6.7730 4.2953 -0.0005 10 7 5.6407 2.6323 0.0000 11 6 4.2891 -0.0144 0.0005 12 6 3.6027 -1.2078 -0.0053 13 6 2.2056 -1.2095 0.0005 14 6 1.4679 -2.4894 0.0005 15 8 0.6490 -2.7191 0.8692 16 7 1.7027 -3.4026 -0.9626 17 6 2.7441 -3.1736 -1.9734 18 6 2.1304 -3.3280 -3.3638 19 6 1.4428 -4.6914 -3.4669 20 6 0.3210 -4.7785 -2.4295 21 1 -0.3951 -3.9745 -2.5995 22 6 -0.3771 -6.1084 -2.5532 23 1 -0.1010 -6.7919 -3.3426 24 6 -1.3683 -6.4525 -1.6587 25 7 -1.7780 -5.5804 -0.7636 26 14 -2.1295 -8.1573 -1.7184 27 1 -1.4374 -9.0426 -0.7476 28 1 -3.5699 -8.0689 -1.3680 29 1 -1.9863 -8.7158 -3.0868 30 6 0.9179 -4.6431 -1.0252 31 1 -0.3634 0.0870 -1.0240 32 1 -0.3634 -0.9302 0.4368 33 1 -0.3633 0.8434 0.5873 34 1 1.6559 2.1277 0.0004 35 1 5.3691 -0.0129 0.0005 36 1 4.1442 -2.1423 -0.0095 37 1 3.1456 -2.1663 -1.8626 38 1 3.5432 -3.9038 -1.8466 39 1 2.9138 -3.2576 -4.1184 40 1 1.3973 -2.5376 -3.5250 41 1 2.1713 -5.4805 -3.2811 42 1 1.0237 -4.8118 -4.4659 43 1 -2.4751 -5.8226 -0.1341 44 1 1.5652 -5.4958 -0.8195 45 1 0.1150 -4.6053 -0.2890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591861693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 88.732606 kcal Electronic energy + Delta-G solvation = -29359.192922 eV Core-core repulsion = 25378.421063 eV Total energy + Delta-G solvation = -3980.771859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.46257 -41.63685 -39.77704 -38.29776 -35.55896 -35.29686 -34.85409 -33.74995 -33.23659 -32.06273 -31.26629 -28.32366 -27.14274 -26.72042 -25.62736 -25.32764 -23.56792 -23.23619 -22.37615 -21.33001 -20.18766 -19.97045 -18.68397 -18.13940 -17.96597 -17.33783 -17.14417 -16.69891 -16.50603 -15.52330 -15.50319 -15.30938 -15.10109 -14.77228 -14.70643 -14.47452 -14.35526 -14.15952 -13.82525 -13.72021 -13.45818 -13.36146 -13.12288 -12.89316 -12.86608 -12.69370 -12.38865 -12.33898 -12.24144 -12.22695 -11.99590 -11.96446 -11.68714 -11.58889 -11.14155 -10.94235 -10.65538 -10.47206 -9.85027 -9.67387 -9.39752 -8.10282 -6.25945 -0.55199 0.14426 0.29067 1.11884 1.41119 1.42361 1.42479 1.53029 1.73602 2.19556 2.43333 2.60280 2.68054 3.12331 3.17512 3.51360 3.79132 3.85320 4.08432 4.10406 4.16211 4.18450 4.33721 4.36704 4.47349 4.58323 4.61357 4.66170 4.71024 4.76815 4.81990 4.86609 4.91833 5.10536 5.14999 5.21696 5.26886 5.28946 5.29975 5.37255 5.47503 5.57092 5.62683 5.65258 5.72315 5.91670 6.01505 6.34198 6.63365 6.85741 7.11080 7.26107 7.43655 8.93191 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.002513 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.127325 B =11138.470097 C =11660.136847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 C -0.076 4.076 4 C -0.004 4.004 5 C 0.210 3.790 6 N -0.292 5.292 7 N -0.056 5.056 8 N -0.198 5.198 9 H 0.495 0.505 10 N -0.285 5.285 11 C -0.075 4.075 12 C -0.083 4.083 13 C -0.113 4.113 14 C 0.544 3.456 15 O -0.581 6.581 16 N -0.599 5.599 17 C 0.096 3.904 18 C -0.127 4.127 19 C -0.105 4.105 20 C 0.039 3.961 21 H -0.015 1.015 22 C -0.535 4.535 23 H 0.062 0.938 24 C 0.011 3.989 25 N -0.914 5.914 26 Si 0.955 3.045 27 H -0.276 1.276 28 H -0.288 1.288 29 H -0.263 1.263 30 C 0.124 3.876 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.150 0.850 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.260 0.740 44 H 0.039 0.961 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.050 17.662 -1.002 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.049 4.049 3 C -0.096 4.096 4 C -0.008 4.008 5 C -0.070 4.070 6 N -0.164 5.164 7 N -0.051 5.051 8 N -0.049 5.049 9 H 0.355 0.645 10 N -0.138 5.138 11 C -0.094 4.094 12 C -0.102 4.102 13 C -0.117 4.117 14 C 0.333 3.667 15 O -0.462 6.462 16 N -0.329 5.329 17 C -0.025 4.025 18 C -0.165 4.165 19 C -0.143 4.143 20 C 0.019 3.981 21 H 0.003 0.997 22 C -0.573 4.573 23 H 0.080 0.920 24 C -0.188 4.188 25 N -0.552 5.552 26 Si 0.781 3.219 27 H -0.202 1.202 28 H -0.214 1.214 29 H -0.187 1.187 30 C 0.002 3.998 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.168 0.832 35 H 0.183 0.817 36 H 0.173 0.827 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.576 18.228 -0.437 26.752 hybrid contribution -0.743 -1.321 0.270 1.539 sum 18.833 16.907 -0.167 25.309 Atomic orbital electron populations 1.21005 0.90843 1.03950 1.03109 1.19794 0.96506 0.91317 0.97292 1.20968 0.92562 0.97822 0.98233 1.17414 0.91852 0.87589 1.03919 1.23610 0.86861 0.94073 1.02425 1.76116 1.22880 0.98796 1.18639 1.78878 0.88899 1.22243 1.15081 1.47809 1.12123 1.01316 1.43652 0.64517 1.74906 1.16899 1.00467 1.21530 1.21215 1.01498 0.89266 0.97470 1.21337 0.91021 0.99943 0.97852 1.19979 0.95195 0.92038 1.04477 1.18886 0.82102 0.84220 0.81472 1.90755 1.37166 1.79413 1.38862 1.48478 1.36553 1.19729 1.28143 1.22124 0.89619 1.03618 0.87137 1.21844 1.00546 0.97062 0.97064 1.21519 0.97385 0.96863 0.98512 1.18895 0.92812 0.94997 0.91355 0.99696 1.21514 1.19075 1.02984 1.13767 0.91978 1.25863 0.97021 1.00638 0.95322 1.70073 1.29578 1.35589 1.19993 0.85582 0.77346 0.80275 0.78721 1.20151 1.21416 1.18685 1.21741 0.93807 0.82356 1.01892 0.90578 0.92697 0.88861 0.83198 0.81677 0.82711 0.87571 0.89396 0.87749 0.93435 0.92163 0.93068 0.93125 0.94235 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.68 71.24 0.69 -3.40 16 2 C -0.05 -1.38 5.91 -19.64 -0.12 -1.49 16 3 C -0.08 -1.76 9.35 22.43 0.21 -1.55 16 4 C 0.00 -0.09 5.88 -19.99 -0.12 -0.21 16 5 C 0.21 4.13 7.93 137.32 1.09 5.22 16 6 N -0.29 -6.23 12.22 -52.21 -0.64 -6.87 16 7 N -0.06 -0.93 13.47 37.02 0.50 -0.43 16 8 N -0.20 -2.00 7.90 37.02 0.29 -1.71 16 9 H 0.50 -0.14 8.96 -347.53 -3.12 -3.25 16 10 N -0.29 -4.29 12.07 -52.16 -0.63 -4.92 16 11 C -0.07 -1.34 9.68 22.44 0.22 -1.12 16 12 C -0.08 -1.82 7.45 22.49 0.17 -1.66 16 13 C -0.11 -3.44 4.83 -20.06 -0.10 -3.54 16 14 C 0.54 22.26 6.50 86.75 0.56 22.82 16 15 O -0.58 -29.65 14.58 -3.93 -0.06 -29.71 16 16 N -0.60 -23.75 2.98 -823.27 -2.45 -26.20 16 17 C 0.10 2.72 5.55 86.22 0.48 3.19 16 18 C -0.13 -3.74 6.06 30.53 0.19 -3.55 16 19 C -0.11 -4.00 5.11 30.62 0.16 -3.84 16 20 C 0.04 1.93 2.29 -11.46 -0.03 1.91 16 21 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 22 C -0.53 -29.30 8.61 25.60 0.22 -29.08 16 23 H 0.06 3.27 7.75 -2.91 -0.02 3.25 16 24 C 0.01 0.62 5.23 84.66 0.44 1.06 16 25 N -0.91 -55.39 11.31 21.45 0.24 -55.14 16 26 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 28 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 29 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 30 C 0.12 6.14 5.34 86.36 0.46 6.60 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 2.18 5.57 -2.39 -0.01 2.17 16 33 H 0.09 2.33 8.12 -2.38 -0.02 2.31 16 34 H 0.15 3.12 7.87 -2.91 -0.02 3.10 16 35 H 0.17 2.05 7.87 -2.91 -0.02 2.03 16 36 H 0.16 2.80 7.48 -2.91 -0.02 2.78 16 37 H 0.11 2.42 4.83 -2.39 -0.01 2.41 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.08 4.77 5.04 -2.39 -0.01 4.76 16 Total: -1.00 -77.31 367.73 1.74 -75.57 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -2.07 Total: 11.82 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 4.52 Total: -8.63 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -2.69 Total: -95.27 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.06 Total: -29.71 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -77.31 1.74 -75.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591861693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.300 kcal (2) G-P(sol) polarization free energy of solvation -77.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds