Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38185 * 119.90518 * 2 1 4 4 C 1.37992 * 120.27593 * 180.25362 * 3 2 1 5 5 C 1.39727 * 120.08146 * 359.49244 * 4 3 2 6 6 C 1.47742 * 120.09308 * 180.28004 * 5 4 3 7 7 O 1.21589 * 120.00153 * 313.02253 * 6 5 4 8 8 N 1.34778 * 120.00115 * 133.02620 * 6 5 4 9 9 C 1.36871 * 120.00240 * 184.58464 * 8 6 5 10 10 H 1.07998 * 119.99910 * 222.69496 * 9 8 6 11 11 C 1.39054 * 119.99657 * 42.69381 * 9 8 6 12 12 N 1.31358 * 120.00149 * 15.36410 * 11 9 8 13 13 Si 1.86796 * 119.99608 * 195.36616 * 11 9 8 14 14 H 1.48509 * 109.47124 * 90.00165 * 13 11 9 15 15 H 1.48504 * 109.47078 * 209.99861 * 13 11 9 16 16 H 1.48498 * 109.47347 * 329.99971 * 13 11 9 17 17 C 1.46500 * 119.99747 * 4.58017 * 8 6 5 18 18 C 1.54269 * 110.03513 * 232.42797 * 17 8 6 19 19 C 1.54957 * 104.16338 * 217.14283 * 18 17 8 20 20 C 1.54887 * 102.77961 * 37.88473 * 19 18 17 21 21 C 1.53878 * 110.02967 * 115.21815 * 17 8 6 22 22 C 1.39447 * 119.81071 * 0.48069 * 5 4 3 23 23 C 1.39038 * 119.72555 * 359.77456 * 22 5 4 24 24 C 1.48484 * 120.03899 * 179.97438 * 23 22 5 25 25 N 1.34042 * 126.66769 * 179.71063 * 24 23 22 26 26 N 1.28989 * 107.26544 * 179.83629 * 25 24 23 27 27 N 1.28728 * 108.93992 * 0.42801 * 26 25 24 28 28 H 0.97001 * 125.33948 * 179.74522 * 27 26 25 29 29 N 1.28865 * 109.31849 * 359.72902 * 27 26 25 30 30 H 1.09001 * 109.46853 * 90.00007 * 1 2 3 31 31 H 1.08999 * 109.47268 * 210.00008 * 1 2 3 32 32 H 1.08999 * 109.46910 * 329.99924 * 1 2 3 33 33 H 1.07998 * 119.86639 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.96366 * 179.74530 * 4 3 2 35 35 H 0.97001 * 119.99664 * 184.96975 * 12 11 9 36 36 H 1.08991 * 110.01907 * 353.82611 * 17 8 6 37 37 H 1.09003 * 110.48481 * 335.78925 * 18 17 8 38 38 H 1.09003 * 110.48349 * 98.42883 * 18 17 8 39 39 H 1.08999 * 110.71883 * 279.57501 * 19 18 17 40 40 H 1.09005 * 110.92750 * 156.29904 * 19 18 17 41 41 H 1.08998 * 110.48773 * 203.40257 * 20 19 18 42 42 H 1.09005 * 110.59541 * 80.82294 * 20 19 18 43 43 H 1.09004 * 110.02726 * 238.56771 * 21 17 8 44 44 H 1.09003 * 110.03352 * 359.94675 * 21 17 8 45 45 H 1.08002 * 120.13513 * 179.75145 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1979 0.0000 4 6 3.5759 1.2068 -0.0053 5 6 4.2841 0.0023 0.0001 6 6 5.7614 0.0116 0.0007 7 8 6.3652 0.7306 -0.7719 8 7 6.4400 -0.7770 0.8575 9 6 7.8049 -0.7002 0.9239 10 1 8.3941 -1.6030 0.9874 11 6 8.4329 0.5404 0.9094 12 7 7.7372 1.6314 1.1353 13 14 10.2659 0.6553 0.5685 14 1 10.4895 0.8025 -0.8923 15 1 10.8282 1.8334 1.2764 16 1 10.9373 -0.5786 1.0501 17 6 5.7165 -1.7163 1.7180 18 6 6.1363 -1.5165 3.1890 19 6 6.1550 -2.9504 3.7761 20 6 6.7191 -3.7928 2.6052 21 6 6.0865 -3.1632 1.3470 22 6 3.5924 -1.2086 0.0006 23 6 2.2020 -1.2083 0.0005 24 6 1.4585 -2.4936 0.0005 25 7 0.1270 -2.6481 0.0059 26 7 -0.1113 -3.9158 0.0002 27 7 1.0081 -4.5514 0.0007 28 1 1.1053 -5.5165 0.0006 29 7 1.9793 -3.7044 0.0009 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6523 2.1310 -0.0004 34 1 4.1092 2.1459 -0.0094 35 1 8.1591 2.5011 1.0543 36 1 4.6420 -1.5671 1.6128 37 1 7.1285 -1.0686 3.2450 38 1 5.4075 -0.8982 3.7130 39 1 5.1468 -3.2745 4.0344 40 1 6.8116 -3.0071 4.6443 41 1 6.4156 -4.8350 2.7041 42 1 7.8057 -3.7151 2.5655 43 1 5.1913 -3.7162 1.0625 44 1 6.8037 -3.1664 0.5261 45 1 4.1345 -2.1427 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605808186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 131.942027 kcal Electronic energy + Delta-G solvation = -30603.146690 eV Core-core repulsion = 26624.248532 eV Total energy + Delta-G solvation = -3978.898158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.45491 -39.76542 -38.20938 -36.60421 -34.48911 -33.57455 -33.25350 -32.60273 -31.28437 -30.34214 -28.05768 -27.36990 -26.86888 -24.84306 -24.58810 -23.99407 -21.87162 -21.49077 -20.18167 -19.94067 -19.41751 -18.80968 -17.15577 -17.07681 -16.03190 -15.52138 -15.28490 -15.09832 -14.72050 -14.37207 -14.11972 -14.08938 -13.75310 -13.44069 -13.10123 -12.97758 -12.63690 -12.60793 -12.41868 -11.89696 -11.79064 -11.44287 -11.37881 -11.28518 -11.16399 -10.96694 -10.93195 -10.81580 -10.69895 -10.60217 -10.50219 -10.46214 -10.45700 -10.21115 -10.07637 -9.78002 -8.75072 -8.43998 -8.31476 -7.98785 -7.10523 -6.09399 -3.85851 0.85391 1.23813 1.52768 2.21877 2.47412 3.32419 3.38586 3.41446 3.70600 3.88939 4.21968 4.24086 4.55413 4.91445 5.06633 5.11617 5.17262 5.24112 5.27147 5.39382 5.44562 5.47726 5.55606 5.71492 5.76823 5.86494 5.95727 5.96965 6.04977 6.12811 6.15791 6.20755 6.25248 6.32324 6.33532 6.43504 6.44191 6.52456 6.59335 6.62805 6.75817 6.82163 6.90213 6.98911 7.16680 7.22117 7.64168 8.14804 8.28149 9.05783 9.18017 9.65199 10.29070 10.97503 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.004284 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.003066 B = 6535.040058 C = 7948.599482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 C -0.133 4.133 4 C -0.048 4.048 5 C -0.099 4.099 6 C 0.512 3.488 7 O -0.530 6.530 8 N -0.435 5.435 9 C -0.331 4.331 10 H 0.080 0.920 11 C 0.067 3.933 12 N -0.831 5.831 13 Si 0.907 3.093 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.273 1.273 17 C 0.115 3.885 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.134 4.134 22 C -0.059 4.059 23 C -0.043 4.043 24 C 0.235 3.765 25 N -0.270 5.270 26 N -0.060 5.060 27 N -0.229 5.229 28 H 0.473 0.527 29 N -0.293 5.293 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.837 -9.744 1.805 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.045 4.045 3 C -0.151 4.151 4 C -0.068 4.068 5 C -0.103 4.103 6 C 0.299 3.701 7 O -0.408 6.408 8 N -0.156 5.156 9 C -0.458 4.458 10 H 0.098 0.902 11 C -0.143 4.143 12 N -0.465 5.465 13 Si 0.734 3.266 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.198 1.198 17 C 0.010 3.990 18 C -0.163 4.163 19 C -0.160 4.160 20 C -0.153 4.153 21 C -0.172 4.172 22 C -0.080 4.080 23 C -0.047 4.047 24 C -0.044 4.044 25 N -0.143 5.143 26 N -0.055 5.055 27 N -0.075 5.075 28 H 0.327 0.673 29 N -0.144 5.144 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.030 -9.573 1.491 16.237 hybrid contribution 1.334 -0.207 -0.109 1.354 sum -11.696 -9.779 1.381 15.308 Atomic orbital electron populations 1.21178 0.90397 1.04004 1.02871 1.19919 0.96388 0.91431 0.96725 1.20894 0.93910 0.97106 1.03173 1.21460 0.93380 0.98378 0.93549 1.20535 0.96467 0.92713 1.00605 1.17711 0.84395 0.84851 0.83123 1.90618 1.68651 1.41363 1.40217 1.43253 1.05715 1.34984 1.31635 1.18871 0.80056 0.92622 1.54249 0.90198 1.25205 0.98749 0.95485 0.94839 1.69821 1.37547 0.97946 1.41171 0.86282 0.84125 0.77475 0.78714 1.20423 1.21360 1.19836 1.22103 0.96319 0.89592 0.90974 1.22637 1.03562 0.95314 0.94741 1.22448 0.99715 0.96461 0.97422 1.22241 1.00491 0.97608 0.95005 1.22518 1.00254 0.95991 0.98469 1.21476 0.91899 0.98730 0.95891 1.16992 0.91697 0.86378 1.09588 1.23704 0.87991 0.92359 1.00362 1.76100 1.13842 1.05664 1.18709 1.78877 1.11270 1.00480 1.14862 1.47692 1.01204 1.12351 1.46242 0.67291 1.75014 1.17341 0.99841 1.22246 0.91128 0.88472 0.91876 0.85289 0.84781 0.92549 0.90246 0.88959 0.92975 0.92645 0.92315 0.92950 0.91620 0.92549 0.90782 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.19 36.01 0.33 -1.19 16 2 C -0.04 -0.62 5.91 -104.21 -0.62 -1.23 16 3 C -0.13 -1.98 9.67 -39.69 -0.38 -2.37 16 4 C -0.05 -0.89 9.70 -39.12 -0.38 -1.27 16 5 C -0.10 -2.05 5.14 -105.01 -0.54 -2.59 16 6 C 0.51 12.96 6.41 -12.38 -0.08 12.88 16 7 O -0.53 -15.61 14.77 5.29 0.08 -15.53 16 8 N -0.44 -10.53 2.43 -107.64 -0.26 -10.79 16 9 C -0.33 -8.68 7.22 -15.00 -0.11 -8.79 16 10 H 0.08 2.04 7.51 -52.49 -0.39 1.64 16 11 C 0.07 1.84 4.48 -17.45 -0.08 1.76 16 12 N -0.83 -23.85 11.52 55.50 0.64 -23.21 16 13 Si 0.91 21.42 29.58 -169.99 -5.03 16.39 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 C 0.11 2.25 2.42 -66.81 -0.16 2.09 16 18 C -0.12 -2.34 6.40 -25.03 -0.16 -2.50 16 19 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 20 C -0.12 -1.75 6.83 -25.08 -0.17 -1.92 16 21 C -0.13 -2.28 5.71 -25.62 -0.15 -2.43 16 22 C -0.06 -1.05 6.94 -38.83 -0.27 -1.32 16 23 C -0.04 -0.68 5.87 -104.95 -0.62 -1.30 16 24 C 0.23 3.41 7.78 -156.31 -1.22 2.19 16 25 N -0.27 -3.67 9.06 32.16 0.29 -3.38 16 26 N -0.06 -0.69 13.47 60.35 0.81 0.12 16 27 N -0.23 -2.18 7.90 60.35 0.48 -1.70 16 28 H 0.47 2.14 8.96 -340.38 -3.05 -0.91 16 29 N -0.29 -3.79 12.08 32.17 0.39 -3.40 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 1.22 5.12 -51.93 -0.27 0.96 16 32 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.51 4.19 -51.93 -0.22 1.29 16 37 H 0.09 2.01 6.82 -51.93 -0.35 1.66 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.86 7.64 -51.93 -0.40 0.46 16 44 H 0.07 1.40 7.34 -51.93 -0.38 1.02 16 45 H 0.14 2.44 5.53 -52.49 -0.29 2.15 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -33.02 363.17 -10.18 -43.21 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.29 Total: 2.82 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -4.77 Total: -10.00 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 2.35 Total: -42.36 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.08 Total: -15.53 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.02 -10.18 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605808186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.148 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds