Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38185 * 119.90518 * 2 1 4 4 C 1.37992 * 120.27593 * 180.25362 * 3 2 1 5 5 C 1.39727 * 120.08146 * 359.49244 * 4 3 2 6 6 C 1.47742 * 120.09308 * 180.28004 * 5 4 3 7 7 O 1.21589 * 120.00153 * 313.02253 * 6 5 4 8 8 N 1.34778 * 120.00115 * 133.02620 * 6 5 4 9 9 C 1.36871 * 120.00240 * 184.58464 * 8 6 5 10 10 H 1.07998 * 119.99910 * 222.69496 * 9 8 6 11 11 C 1.39054 * 119.99657 * 42.69381 * 9 8 6 12 12 N 1.31358 * 120.00149 * 15.36410 * 11 9 8 13 13 Si 1.86796 * 119.99608 * 195.36616 * 11 9 8 14 14 H 1.48509 * 109.47124 * 90.00165 * 13 11 9 15 15 H 1.48504 * 109.47078 * 209.99861 * 13 11 9 16 16 H 1.48498 * 109.47347 * 329.99971 * 13 11 9 17 17 C 1.46500 * 119.99747 * 4.58017 * 8 6 5 18 18 C 1.54269 * 110.03513 * 232.42797 * 17 8 6 19 19 C 1.54957 * 104.16338 * 217.14283 * 18 17 8 20 20 C 1.54887 * 102.77961 * 37.88473 * 19 18 17 21 21 C 1.53878 * 110.02967 * 115.21815 * 17 8 6 22 22 C 1.39447 * 119.81071 * 0.48069 * 5 4 3 23 23 C 1.39038 * 119.72555 * 359.77456 * 22 5 4 24 24 C 1.48484 * 120.03899 * 179.97438 * 23 22 5 25 25 N 1.34042 * 126.66769 * 179.71063 * 24 23 22 26 26 N 1.28989 * 107.26544 * 179.83629 * 25 24 23 27 27 N 1.28728 * 108.93992 * 0.42801 * 26 25 24 28 28 H 0.97001 * 125.33948 * 179.74522 * 27 26 25 29 29 N 1.28865 * 109.31849 * 359.72902 * 27 26 25 30 30 H 1.09001 * 109.46853 * 90.00007 * 1 2 3 31 31 H 1.08999 * 109.47268 * 210.00008 * 1 2 3 32 32 H 1.08999 * 109.46910 * 329.99924 * 1 2 3 33 33 H 1.07998 * 119.86639 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.96366 * 179.74530 * 4 3 2 35 35 H 0.97001 * 119.99664 * 184.96975 * 12 11 9 36 36 H 1.08991 * 110.01907 * 353.82611 * 17 8 6 37 37 H 1.09003 * 110.48481 * 335.78925 * 18 17 8 38 38 H 1.09003 * 110.48349 * 98.42883 * 18 17 8 39 39 H 1.08999 * 110.71883 * 279.57501 * 19 18 17 40 40 H 1.09005 * 110.92750 * 156.29904 * 19 18 17 41 41 H 1.08998 * 110.48773 * 203.40257 * 20 19 18 42 42 H 1.09005 * 110.59541 * 80.82294 * 20 19 18 43 43 H 1.09004 * 110.02726 * 238.56771 * 21 17 8 44 44 H 1.09003 * 110.03352 * 359.94675 * 21 17 8 45 45 H 1.08002 * 120.13513 * 179.75145 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1979 0.0000 4 6 3.5759 1.2068 -0.0053 5 6 4.2841 0.0023 0.0001 6 6 5.7614 0.0116 0.0007 7 8 6.3652 0.7306 -0.7719 8 7 6.4400 -0.7770 0.8575 9 6 7.8049 -0.7002 0.9239 10 1 8.3941 -1.6030 0.9874 11 6 8.4329 0.5404 0.9094 12 7 7.7372 1.6314 1.1353 13 14 10.2659 0.6553 0.5685 14 1 10.4895 0.8025 -0.8923 15 1 10.8282 1.8334 1.2764 16 1 10.9373 -0.5786 1.0501 17 6 5.7165 -1.7163 1.7180 18 6 6.1363 -1.5165 3.1890 19 6 6.1550 -2.9504 3.7761 20 6 6.7191 -3.7928 2.6052 21 6 6.0865 -3.1632 1.3470 22 6 3.5924 -1.2086 0.0006 23 6 2.2020 -1.2083 0.0005 24 6 1.4585 -2.4936 0.0005 25 7 0.1270 -2.6481 0.0059 26 7 -0.1113 -3.9158 0.0002 27 7 1.0081 -4.5514 0.0007 28 1 1.1053 -5.5165 0.0006 29 7 1.9793 -3.7044 0.0009 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6523 2.1310 -0.0004 34 1 4.1092 2.1459 -0.0094 35 1 8.1591 2.5011 1.0543 36 1 4.6420 -1.5671 1.6128 37 1 7.1285 -1.0686 3.2450 38 1 5.4075 -0.8982 3.7130 39 1 5.1468 -3.2745 4.0344 40 1 6.8116 -3.0071 4.6443 41 1 6.4156 -4.8350 2.7041 42 1 7.8057 -3.7151 2.5655 43 1 5.1913 -3.7162 1.0625 44 1 6.8037 -3.1664 0.5261 45 1 4.1345 -2.1427 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605808186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 111.664823 kcal Electronic energy + Delta-G solvation = -30604.025975 eV Core-core repulsion = 26624.248532 eV Total energy + Delta-G solvation = -3979.777443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.42047 -41.31473 -39.67286 -38.27974 -35.55137 -35.19015 -34.55878 -34.05824 -32.99895 -31.58932 -29.45812 -28.76433 -28.37464 -26.39500 -25.88990 -25.04739 -23.23732 -22.87188 -21.55299 -21.30936 -20.96570 -20.00550 -18.68725 -18.09915 -17.76335 -16.94811 -16.84459 -16.54603 -16.21901 -15.90133 -15.70051 -15.32515 -15.17538 -14.79489 -14.55225 -14.39756 -14.11620 -14.01465 -13.59428 -13.32501 -13.08824 -12.87892 -12.80103 -12.68386 -12.61331 -12.43382 -12.35833 -12.31390 -12.24592 -12.05297 -11.89938 -11.85037 -11.80393 -11.56952 -11.37397 -11.31894 -10.75182 -10.15606 -9.72016 -9.47105 -9.08207 -8.15459 -5.94604 -0.31052 0.16287 0.23687 1.29745 1.38510 1.45518 1.46850 1.50321 2.26641 2.41780 2.66660 2.81262 3.11186 3.24875 3.31339 3.79221 3.88985 3.91323 3.95990 4.04427 4.08167 4.28066 4.37747 4.44096 4.46777 4.59097 4.68224 4.75441 4.79334 4.83098 4.86014 4.93822 4.97292 5.00460 5.09704 5.17119 5.24047 5.28123 5.41610 5.44127 5.48728 5.56009 5.57694 5.59522 5.66358 5.67513 5.89731 6.25280 7.04863 7.17452 7.22995 7.69461 8.35292 8.91148 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.004284 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.003066 B = 6535.040058 C = 7948.599482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 C -0.117 4.117 4 C -0.066 4.066 5 C -0.129 4.129 6 C 0.500 3.500 7 O -0.589 6.589 8 N -0.445 5.445 9 C -0.336 4.336 10 H 0.082 0.918 11 C 0.017 3.983 12 N -0.868 5.868 13 Si 0.963 3.037 14 H -0.292 1.292 15 H -0.284 1.284 16 H -0.252 1.252 17 C 0.109 3.891 18 C -0.126 4.126 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.128 4.128 22 C -0.057 4.057 23 C -0.039 4.039 24 C 0.218 3.782 25 N -0.277 5.277 26 N -0.056 5.056 27 N -0.199 5.199 28 H 0.494 0.506 29 N -0.298 5.298 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.165 0.835 34 H 0.112 0.888 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.529 -12.408 2.707 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.034 4.034 3 C -0.134 4.134 4 C -0.085 4.085 5 C -0.133 4.133 6 C 0.290 3.710 7 O -0.472 6.472 8 N -0.164 5.164 9 C -0.463 4.463 10 H 0.100 0.900 11 C -0.189 4.189 12 N -0.503 5.503 13 Si 0.789 3.211 14 H -0.218 1.218 15 H -0.210 1.210 16 H -0.176 1.176 17 C 0.006 3.994 18 C -0.164 4.164 19 C -0.147 4.147 20 C -0.148 4.148 21 C -0.166 4.166 22 C -0.078 4.078 23 C -0.043 4.043 24 C -0.061 4.061 25 N -0.149 5.149 26 N -0.051 5.051 27 N -0.050 5.050 28 H 0.353 0.647 29 N -0.150 5.150 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.183 0.817 34 H 0.131 0.869 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.735 -12.310 2.433 20.125 hybrid contribution 1.992 0.476 -0.417 2.090 sum -13.742 -11.834 2.016 18.247 Atomic orbital electron populations 1.21233 0.87751 1.05152 1.03883 1.20331 0.98112 0.90630 0.94317 1.21168 0.92123 0.98993 1.01154 1.21404 0.95086 0.96846 0.95208 1.20166 0.93832 0.94815 1.04470 1.18475 0.86540 0.83783 0.82234 1.90549 1.70558 1.43613 1.42455 1.43470 1.05505 1.35413 1.32012 1.19087 0.81528 0.92501 1.53227 0.90022 1.26008 1.02541 0.95398 0.94984 1.69940 1.39024 0.98049 1.43333 0.85401 0.79919 0.78292 0.77505 1.21849 1.20985 1.17606 1.22358 0.96361 0.90022 0.90691 1.22585 1.01184 0.97962 0.94718 1.22405 1.01523 0.93183 0.97614 1.22234 0.99660 0.99348 0.93570 1.22455 1.00828 0.94541 0.98796 1.21291 0.92860 0.97328 0.96284 1.17082 0.90885 0.87929 1.08371 1.23430 0.88437 0.92172 1.02085 1.76100 1.13217 1.06528 1.19082 1.78838 1.11524 0.99999 1.14695 1.47734 1.00085 1.13172 1.43960 0.64733 1.74965 1.18213 0.99840 1.21968 0.89939 0.88658 0.89446 0.81702 0.86943 0.93313 0.89497 0.92633 0.93250 0.90230 0.90895 0.89475 0.92822 0.90119 0.93239 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.19 71.24 0.65 -1.83 16 2 C -0.03 -0.84 5.91 -19.60 -0.12 -0.96 16 3 C -0.12 -3.32 9.67 22.20 0.21 -3.10 16 4 C -0.07 -2.52 9.70 22.57 0.22 -2.30 16 5 C -0.13 -5.57 5.14 -20.11 -0.10 -5.68 16 6 C 0.50 26.95 6.41 86.76 0.56 27.50 16 7 O -0.59 -37.26 14.77 -4.00 -0.06 -37.31 16 8 N -0.44 -22.58 2.43 -612.73 -1.49 -24.07 16 9 C -0.34 -18.46 7.22 84.10 0.61 -17.85 16 10 H 0.08 4.33 7.51 -2.91 -0.02 4.31 16 11 C 0.02 0.95 4.48 84.96 0.38 1.33 16 12 N -0.87 -52.98 11.52 21.68 0.25 -52.73 16 13 Si 0.96 45.87 29.58 68.60 2.03 47.90 16 14 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 15 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 16 H -0.25 -11.00 7.11 99.48 0.71 -10.29 16 17 C 0.11 4.35 2.42 45.72 0.11 4.46 16 18 C -0.13 -4.79 6.40 31.69 0.20 -4.59 16 19 C -0.11 -3.04 6.91 31.91 0.22 -2.82 16 20 C -0.11 -3.07 6.83 31.67 0.22 -2.86 16 21 C -0.13 -4.24 5.71 31.32 0.18 -4.07 16 22 C -0.06 -2.03 6.94 22.75 0.16 -1.87 16 23 C -0.04 -1.18 5.87 -20.07 -0.12 -1.30 16 24 C 0.22 5.76 7.78 137.39 1.07 6.83 16 25 N -0.28 -6.64 9.06 -52.17 -0.47 -7.11 16 26 N -0.06 -1.10 13.47 37.02 0.50 -0.60 16 27 N -0.20 -3.07 7.90 37.02 0.29 -2.78 16 28 H 0.49 2.55 8.96 -347.54 -3.12 -0.56 16 29 N -0.30 -6.81 12.08 -52.12 -0.63 -7.44 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 2.05 5.12 -2.39 -0.01 2.04 16 32 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 33 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 34 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.09 3.33 4.19 -2.39 -0.01 3.32 16 37 H 0.05 2.52 6.82 -2.39 -0.02 2.50 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.08 2.27 7.64 -2.38 -0.02 2.25 16 44 H 0.05 1.88 7.34 -2.39 -0.02 1.87 16 45 H 0.14 4.81 5.53 -2.91 -0.02 4.80 16 Total: -1.00 -77.59 363.17 2.81 -74.78 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -2.06 Total: 18.47 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 4.45 Total: -9.10 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -1.55 Total: -94.74 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.06 Total: -37.31 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -77.59 2.81 -74.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605808186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.444 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds