Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39412 * 120.13496 * 2 1 4 4 C 1.47859 * 120.08718 * 359.96138 * 3 2 1 5 5 O 1.21551 * 119.99828 * 303.46593 * 4 3 2 6 6 N 1.34780 * 119.99947 * 123.46722 * 4 3 2 7 7 C 1.46499 * 119.99907 * 4.91874 * 6 4 3 8 8 C 1.50700 * 109.47404 * 89.99931 * 7 6 4 9 9 H 1.08004 * 119.99515 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00442 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99720 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00186 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47113 * 89.99634 * 12 10 8 14 14 H 1.48495 * 109.47155 * 209.99731 * 12 10 8 15 15 H 1.48503 * 109.47163 * 329.99602 * 12 10 8 16 16 C 1.46496 * 119.99762 * 184.91537 * 6 4 3 17 17 C 1.53008 * 109.46841 * 94.63699 * 16 6 4 18 18 C 1.53005 * 117.49415 * 246.25018 * 17 16 6 19 19 C 1.53001 * 117.49556 * 177.59349 * 17 16 6 20 20 C 1.39620 * 119.82281 * 179.97438 * 3 2 1 21 21 C 1.38052 * 120.09162 * 0.02562 * 20 3 2 22 22 C 1.38134 * 120.26899 * 0.02562 * 21 20 3 23 23 C 1.39029 * 120.13332 * 179.97438 * 2 1 3 24 24 C 1.48478 * 120.04266 * 0.03941 * 23 2 1 25 25 N 1.34042 * 126.67575 * 359.68828 * 24 23 2 26 26 N 1.28987 * 107.26671 * 179.89881 * 25 24 23 27 27 N 1.28727 * 108.94465 * 0.37213 * 26 25 24 28 28 H 0.96998 * 125.34320 * 179.80493 * 27 26 25 29 29 N 1.28870 * 109.31581 * 359.76565 * 27 26 25 30 30 H 1.09001 * 109.46908 * 96.42498 * 1 2 3 31 31 H 1.09000 * 109.46852 * 216.43039 * 1 2 3 32 32 H 1.08997 * 109.46316 * 336.42736 * 1 2 3 33 33 H 1.08996 * 109.46971 * 209.99747 * 7 6 4 34 34 H 1.09003 * 109.47384 * 329.99688 * 7 6 4 35 35 H 0.96997 * 119.99915 * 179.97438 * 11 10 8 36 36 H 1.09001 * 109.47221 * 214.63171 * 16 6 4 37 37 H 1.08996 * 109.47781 * 334.63509 * 16 6 4 38 38 H 1.09003 * 115.54969 * 31.91782 * 17 16 6 39 39 H 1.08994 * 117.50345 * 0.02562 * 18 17 16 40 40 H 1.09003 * 117.49117 * 145.02232 * 18 17 16 41 41 H 1.09006 * 117.49151 * 214.97866 * 19 17 16 42 42 H 1.08993 * 117.50308 * 359.97438 * 19 17 16 43 43 H 1.08000 * 119.94889 * 179.72896 * 20 3 2 44 44 H 1.07996 * 119.86665 * 180.02562 * 21 20 3 45 45 H 1.07997 * 119.90559 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.2057 0.0000 4 6 1.4726 2.4890 -0.0009 5 8 0.6675 2.7279 -0.8796 6 7 1.6961 3.3940 0.9727 7 6 2.7422 3.1539 1.9698 8 6 4.0448 3.7326 1.4806 9 1 4.0890 4.2292 0.5225 10 6 5.1803 3.6273 2.2556 11 7 5.1264 3.0221 3.4220 12 14 6.7947 4.3453 1.6495 13 1 6.9133 5.7530 2.1073 14 1 7.9251 3.5509 2.1937 15 1 6.8292 4.3029 0.1654 16 6 0.8929 4.6176 1.0336 17 6 -0.2828 4.4087 1.9904 18 6 -1.6906 4.4134 1.3912 19 6 -1.2139 5.5978 2.2355 20 6 3.6031 1.1981 0.0005 21 6 4.2888 -0.0001 0.0005 22 6 3.5991 -1.1970 -0.0005 23 6 2.2050 -1.2024 0.0005 24 6 1.4665 -2.4905 0.0002 25 7 0.1357 -2.6505 0.0053 26 7 -0.0975 -3.9191 0.0008 27 7 1.0244 -4.5502 0.0011 28 1 1.1255 -5.5149 0.0009 29 7 1.9922 -3.6993 0.0008 30 1 -0.3633 -0.1150 -1.0212 31 1 -0.3633 -0.8268 0.6103 32 1 -0.3632 0.9419 0.4110 33 1 2.4637 3.6295 2.9102 34 1 2.8568 2.0811 2.1251 35 1 5.9253 2.9477 3.9671 36 1 1.5111 5.4406 1.3921 37 1 0.5144 4.8538 0.0392 38 1 -0.0941 3.7362 2.8272 39 1 -1.7793 4.5647 0.3154 40 1 -2.4282 3.7442 1.8342 41 1 -1.6381 5.7074 3.2337 42 1 -0.9887 6.5289 1.7156 43 1 4.1474 2.1309 -0.0039 44 1 5.3687 -0.0018 0.0014 45 1 4.1414 -2.1309 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609380407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = 144.357330 kcal Electronic energy + Delta-G solvation = -29898.475102 eV Core-core repulsion = 25920.115312 eV Total energy + Delta-G solvation = -3978.359790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.40213 -39.91864 -38.19378 -36.78048 -34.87089 -34.39102 -33.44715 -32.54422 -32.21861 -30.49720 -27.85185 -27.08038 -26.05158 -24.77240 -23.93022 -23.18274 -22.33194 -22.02965 -20.90534 -20.25616 -19.07033 -18.63190 -17.10520 -16.82178 -16.58215 -16.05756 -15.30804 -15.27124 -14.84101 -14.51771 -14.44021 -14.19563 -13.90375 -13.36690 -13.16514 -13.08453 -12.73498 -12.48420 -12.28787 -11.96805 -11.80982 -11.72583 -11.55640 -11.37918 -11.31111 -11.23872 -11.19537 -10.95043 -10.88025 -10.81045 -10.60029 -10.54799 -10.26015 -10.10366 -9.75479 -9.58548 -9.10253 -8.63880 -8.31337 -8.19590 -7.74426 -6.24009 -4.31287 0.90966 1.30801 1.57916 2.24661 2.54633 3.18023 3.26550 3.28002 3.38830 3.71503 3.88561 4.17116 4.21688 4.27984 4.34404 5.06894 5.09162 5.14461 5.19410 5.26699 5.32094 5.37943 5.50010 5.51746 5.62693 5.79967 5.85126 5.87165 6.10024 6.13837 6.16453 6.20319 6.21835 6.27685 6.29232 6.38185 6.38757 6.59459 6.70606 6.72345 6.79647 6.91167 6.94920 7.19589 7.30261 7.52965 7.70002 8.00372 8.20028 8.29604 8.72814 8.97452 9.34604 10.81914 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.004487 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.146237 B = 6238.911471 C = 8719.482863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.001 3.999 3 C -0.124 4.124 4 C 0.566 3.434 5 O -0.561 6.561 6 N -0.587 5.587 7 C 0.234 3.766 8 C -0.542 4.542 9 H 0.063 0.937 10 C 0.070 3.930 11 N -0.882 5.882 12 Si 0.890 3.110 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.149 3.851 17 C -0.161 4.161 18 C -0.177 4.177 19 C -0.179 4.179 20 C -0.032 4.032 21 C -0.138 4.138 22 C -0.062 4.062 23 C -0.054 4.054 24 C 0.239 3.761 25 N -0.266 5.266 26 N -0.059 5.059 27 N -0.232 5.232 28 H 0.472 0.528 29 N -0.302 5.302 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.165 0.835 44 H 0.131 0.869 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -9.135 -3.653 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.002 4.002 3 C -0.127 4.127 4 C 0.354 3.646 5 O -0.441 6.441 6 N -0.316 5.316 7 C 0.114 3.886 8 C -0.580 4.580 9 H 0.082 0.918 10 C -0.134 4.134 11 N -0.519 5.519 12 Si 0.717 3.283 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.195 1.195 16 C 0.025 3.975 17 C -0.180 4.180 18 C -0.214 4.214 19 C -0.217 4.217 20 C -0.051 4.051 21 C -0.156 4.156 22 C -0.082 4.082 23 C -0.057 4.057 24 C -0.040 4.040 25 N -0.139 5.139 26 N -0.054 5.054 27 N -0.078 5.078 28 H 0.326 0.674 29 N -0.153 5.153 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.182 0.818 44 H 0.148 0.852 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.777 -9.446 -3.908 12.265 hybrid contribution 1.623 -0.066 0.086 1.626 sum -5.154 -9.513 -3.822 11.475 Atomic orbital electron populations 1.21048 0.89895 1.03225 1.03292 1.19810 0.96533 0.90206 0.93636 1.19676 0.94213 0.92701 1.06129 1.18125 0.81362 0.83564 0.81535 1.90685 1.37152 1.79032 1.37266 1.48108 1.35344 1.18806 1.29320 1.19518 0.84166 0.98170 0.86763 1.21453 0.93441 1.38101 1.04993 0.91840 1.24917 0.98979 0.94815 0.94677 1.69927 1.29685 1.41465 1.10827 0.86614 0.82992 0.79350 0.79324 1.20455 1.20977 1.19533 1.20864 0.90612 0.87475 0.98530 1.22784 0.91673 1.01554 1.01985 1.22987 0.97611 1.01163 0.99590 1.22896 1.04441 0.93309 1.01052 1.22325 0.92944 1.00740 0.89044 1.21009 1.00334 0.91554 1.02708 1.21171 0.91986 0.98884 0.96159 1.16857 0.92003 0.85945 1.10944 1.23681 0.87990 0.92309 1.00006 1.76246 1.14047 1.05390 1.18219 1.78901 1.11029 1.00676 1.14825 1.47672 1.01322 1.12226 1.46546 0.67433 1.74927 1.17624 0.99723 1.23070 0.90587 0.89420 0.91564 0.94560 0.93961 0.92408 0.90016 0.90413 0.87784 0.88686 0.89460 0.89184 0.88940 0.81812 0.85156 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 8.27 36.01 0.30 -1.73 16 2 C 0.00 0.02 5.94 -103.89 -0.62 -0.59 16 3 C -0.12 -2.46 4.62 -105.01 -0.48 -2.94 16 4 C 0.57 11.92 5.99 -12.32 -0.07 11.85 16 5 O -0.56 -12.57 15.59 5.32 0.08 -12.48 16 6 N -0.59 -12.10 2.46 -176.17 -0.43 -12.54 16 7 C 0.23 5.33 4.73 -5.19 -0.02 5.31 16 8 C -0.54 -13.03 6.57 -34.44 -0.23 -13.26 16 9 H 0.06 1.55 7.75 -52.48 -0.41 1.14 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.88 -23.02 13.29 55.43 0.74 -22.29 16 12 Si 0.89 19.27 29.54 -169.99 -5.02 14.25 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 C 0.15 2.70 5.77 -4.04 -0.02 2.68 16 17 C -0.16 -2.58 6.01 -90.61 -0.54 -3.13 16 18 C -0.18 -2.52 10.18 -26.69 -0.27 -2.79 16 19 C -0.18 -2.37 10.25 -26.69 -0.27 -2.64 16 20 C -0.03 -0.61 7.78 -39.13 -0.30 -0.91 16 21 C -0.14 -2.28 10.02 -39.69 -0.40 -2.68 16 22 C -0.06 -0.95 9.69 -39.18 -0.38 -1.33 16 23 C -0.05 -0.90 5.87 -104.94 -0.62 -1.51 16 24 C 0.24 3.66 7.78 -156.30 -1.22 2.44 16 25 N -0.27 -4.04 9.18 32.16 0.30 -3.75 16 26 N -0.06 -0.74 13.47 60.35 0.81 0.07 16 27 N -0.23 -2.27 7.90 60.35 0.48 -1.80 16 28 H 0.47 2.13 8.96 -340.37 -3.05 -0.93 16 29 N -0.30 -3.88 12.07 32.17 0.39 -3.49 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.44 5.63 -51.93 -0.29 1.15 16 32 H 0.07 1.20 6.55 -51.93 -0.34 0.86 16 33 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.04 1.03 6.15 -51.93 -0.32 0.71 16 35 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 37 H 0.08 1.42 6.97 -51.93 -0.36 1.06 16 38 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 39 H 0.09 1.40 8.04 -51.93 -0.42 0.98 16 40 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.16 3.42 5.23 -52.49 -0.27 3.14 16 44 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.13 1.68 7.87 -52.49 -0.41 1.26 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -29.16 376.16 -10.64 -39.80 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -8.39 Total: 6.16 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -5.25 Total: -9.61 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 2.28 Total: -43.78 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.16 -10.64 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609380407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.158 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds