Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39412 * 120.13496 * 2 1 4 4 C 1.47859 * 120.08718 * 359.96138 * 3 2 1 5 5 O 1.21551 * 119.99828 * 303.46593 * 4 3 2 6 6 N 1.34780 * 119.99947 * 123.46722 * 4 3 2 7 7 C 1.46499 * 119.99907 * 4.91874 * 6 4 3 8 8 C 1.50700 * 109.47404 * 89.99931 * 7 6 4 9 9 H 1.08004 * 119.99515 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00442 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99720 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00186 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47113 * 89.99634 * 12 10 8 14 14 H 1.48495 * 109.47155 * 209.99731 * 12 10 8 15 15 H 1.48503 * 109.47163 * 329.99602 * 12 10 8 16 16 C 1.46496 * 119.99762 * 184.91537 * 6 4 3 17 17 C 1.53008 * 109.46841 * 94.63699 * 16 6 4 18 18 C 1.53005 * 117.49415 * 246.25018 * 17 16 6 19 19 C 1.53001 * 117.49556 * 177.59349 * 17 16 6 20 20 C 1.39620 * 119.82281 * 179.97438 * 3 2 1 21 21 C 1.38052 * 120.09162 * 0.02562 * 20 3 2 22 22 C 1.38134 * 120.26899 * 0.02562 * 21 20 3 23 23 C 1.39029 * 120.13332 * 179.97438 * 2 1 3 24 24 C 1.48478 * 120.04266 * 0.03941 * 23 2 1 25 25 N 1.34042 * 126.67575 * 359.68828 * 24 23 2 26 26 N 1.28987 * 107.26671 * 179.89881 * 25 24 23 27 27 N 1.28727 * 108.94465 * 0.37213 * 26 25 24 28 28 H 0.96998 * 125.34320 * 179.80493 * 27 26 25 29 29 N 1.28870 * 109.31581 * 359.76565 * 27 26 25 30 30 H 1.09001 * 109.46908 * 96.42498 * 1 2 3 31 31 H 1.09000 * 109.46852 * 216.43039 * 1 2 3 32 32 H 1.08997 * 109.46316 * 336.42736 * 1 2 3 33 33 H 1.08996 * 109.46971 * 209.99747 * 7 6 4 34 34 H 1.09003 * 109.47384 * 329.99688 * 7 6 4 35 35 H 0.96997 * 119.99915 * 179.97438 * 11 10 8 36 36 H 1.09001 * 109.47221 * 214.63171 * 16 6 4 37 37 H 1.08996 * 109.47781 * 334.63509 * 16 6 4 38 38 H 1.09003 * 115.54969 * 31.91782 * 17 16 6 39 39 H 1.08994 * 117.50345 * 0.02562 * 18 17 16 40 40 H 1.09003 * 117.49117 * 145.02232 * 18 17 16 41 41 H 1.09006 * 117.49151 * 214.97866 * 19 17 16 42 42 H 1.08993 * 117.50308 * 359.97438 * 19 17 16 43 43 H 1.08000 * 119.94889 * 179.72896 * 20 3 2 44 44 H 1.07996 * 119.86665 * 180.02562 * 21 20 3 45 45 H 1.07997 * 119.90559 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.2057 0.0000 4 6 1.4726 2.4890 -0.0009 5 8 0.6675 2.7279 -0.8796 6 7 1.6961 3.3940 0.9727 7 6 2.7422 3.1539 1.9698 8 6 4.0448 3.7326 1.4806 9 1 4.0890 4.2292 0.5225 10 6 5.1803 3.6273 2.2556 11 7 5.1264 3.0221 3.4220 12 14 6.7947 4.3453 1.6495 13 1 6.9133 5.7530 2.1073 14 1 7.9251 3.5509 2.1937 15 1 6.8292 4.3029 0.1654 16 6 0.8929 4.6176 1.0336 17 6 -0.2828 4.4087 1.9904 18 6 -1.6906 4.4134 1.3912 19 6 -1.2139 5.5978 2.2355 20 6 3.6031 1.1981 0.0005 21 6 4.2888 -0.0001 0.0005 22 6 3.5991 -1.1970 -0.0005 23 6 2.2050 -1.2024 0.0005 24 6 1.4665 -2.4905 0.0002 25 7 0.1357 -2.6505 0.0053 26 7 -0.0975 -3.9191 0.0008 27 7 1.0244 -4.5502 0.0011 28 1 1.1255 -5.5149 0.0009 29 7 1.9922 -3.6993 0.0008 30 1 -0.3633 -0.1150 -1.0212 31 1 -0.3633 -0.8268 0.6103 32 1 -0.3632 0.9419 0.4110 33 1 2.4637 3.6295 2.9102 34 1 2.8568 2.0811 2.1251 35 1 5.9253 2.9477 3.9671 36 1 1.5111 5.4406 1.3921 37 1 0.5144 4.8538 0.0392 38 1 -0.0941 3.7362 2.8272 39 1 -1.7793 4.5647 0.3154 40 1 -2.4282 3.7442 1.8342 41 1 -1.6381 5.7074 3.2337 42 1 -0.9887 6.5289 1.7156 43 1 4.1474 2.1309 -0.0039 44 1 5.3687 -0.0018 0.0014 45 1 4.1414 -2.1309 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609380407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = 128.975921 kcal Electronic energy + Delta-G solvation = -29899.142090 eV Core-core repulsion = 25920.115312 eV Total energy + Delta-G solvation = -3979.026778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.43930 -41.44489 -39.61310 -38.12675 -36.52339 -35.51668 -34.58169 -34.39974 -33.56259 -31.80027 -29.57281 -28.56279 -27.53141 -25.88673 -25.08902 -24.99535 -23.72412 -23.16601 -22.17802 -21.58636 -20.22892 -20.03470 -18.55797 -18.22956 -18.11527 -17.61360 -16.75054 -16.70870 -16.34985 -16.03519 -15.83420 -15.57141 -15.11586 -14.69976 -14.58791 -14.50486 -14.26994 -14.10584 -13.72066 -13.46888 -13.30452 -13.06895 -12.98440 -12.83455 -12.64838 -12.56830 -12.52638 -12.36266 -12.32288 -12.16648 -12.05905 -11.82105 -11.77268 -11.67287 -11.29741 -10.87306 -10.71222 -10.53646 -9.72822 -9.52688 -9.44608 -8.15022 -6.28150 -0.27539 0.13021 0.25966 1.29584 1.44541 1.45349 1.49274 1.57263 1.80496 2.23638 2.46496 2.68288 2.83790 2.96771 3.15150 3.18628 3.70421 3.84823 3.86074 4.02535 4.06118 4.16314 4.19566 4.26642 4.41979 4.43693 4.53401 4.69723 4.76755 4.78833 4.82436 4.84025 4.86344 4.91277 4.96301 5.03162 5.25659 5.28680 5.31033 5.34763 5.37852 5.52104 5.53795 5.66535 5.69789 5.86885 5.91750 6.09734 6.55385 6.83429 7.15143 7.28042 7.42838 8.90704 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.004487 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.146237 B = 6238.911471 C = 8719.482863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.013 4.013 3 C -0.146 4.146 4 C 0.564 3.436 5 O -0.581 6.581 6 N -0.589 5.589 7 C 0.254 3.746 8 C -0.540 4.540 9 H 0.056 0.944 10 C 0.034 3.966 11 N -0.913 5.913 12 Si 0.947 3.053 13 H -0.280 1.280 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.148 3.852 17 C -0.185 4.185 18 C -0.173 4.173 19 C -0.153 4.153 20 C -0.051 4.051 21 C -0.135 4.135 22 C -0.050 4.050 23 C -0.051 4.051 24 C 0.220 3.780 25 N -0.290 5.290 26 N -0.059 5.059 27 N -0.198 5.198 28 H 0.495 0.505 29 N -0.291 5.291 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.027 0.973 35 H 0.268 0.732 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.143 0.857 44 H 0.153 0.847 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.569 -10.639 -3.868 12.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.016 4.016 3 C -0.149 4.149 4 C 0.353 3.647 5 O -0.463 6.463 6 N -0.317 5.317 7 C 0.133 3.867 8 C -0.578 4.578 9 H 0.074 0.926 10 C -0.168 4.168 11 N -0.551 5.551 12 Si 0.773 3.227 13 H -0.206 1.206 14 H -0.206 1.206 15 H -0.190 1.190 16 C 0.026 3.974 17 C -0.204 4.204 18 C -0.210 4.210 19 C -0.190 4.190 20 C -0.070 4.070 21 C -0.153 4.153 22 C -0.070 4.070 23 C -0.054 4.054 24 C -0.059 4.059 25 N -0.162 5.162 26 N -0.053 5.053 27 N -0.049 5.049 28 H 0.354 0.646 29 N -0.143 5.143 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.161 0.839 44 H 0.171 0.829 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.438 -10.959 -4.127 13.364 hybrid contribution 1.468 0.238 0.134 1.493 sum -4.970 -10.721 -3.993 12.473 Atomic orbital electron populations 1.20923 0.89570 1.02474 1.03189 1.19924 0.96929 0.90422 0.94318 1.19672 0.94609 0.92598 1.07977 1.18397 0.81127 0.84075 0.81105 1.90649 1.38172 1.79595 1.37901 1.48116 1.35212 1.19633 1.28784 1.19118 0.84437 0.96777 0.86371 1.21513 0.94052 1.37677 1.04562 0.92558 1.25514 1.01627 0.94993 0.94649 1.70022 1.30496 1.42723 1.11867 0.85712 0.79559 0.78400 0.79038 1.20564 1.20555 1.18963 1.20945 0.91112 0.86458 0.98921 1.22605 0.91910 1.04143 1.01756 1.23012 0.96234 1.02138 0.99576 1.23017 1.01423 0.92713 1.01858 1.22161 0.92736 1.01065 0.91022 1.21250 1.01458 0.90928 1.01642 1.21456 0.91586 0.99604 0.94356 1.16993 0.92652 0.86140 1.09629 1.23457 0.88184 0.92470 1.01814 1.76209 1.14251 1.06611 1.19152 1.78855 1.11501 1.00012 1.14961 1.47741 1.00164 1.13167 1.43795 0.64617 1.74869 1.18008 0.99185 1.22286 0.90685 0.88596 0.93342 0.96461 0.95537 0.92328 0.90322 0.90801 0.89252 0.89247 0.88379 0.87278 0.87673 0.83914 0.82910 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.69 8.27 71.24 0.59 -3.10 16 2 C -0.01 -0.48 5.94 -19.39 -0.12 -0.59 16 3 C -0.15 -5.96 4.62 -20.11 -0.09 -6.06 16 4 C 0.56 24.84 5.99 86.79 0.52 25.36 16 5 O -0.58 -27.11 15.59 -3.88 -0.06 -27.17 16 6 N -0.59 -25.48 2.46 -829.55 -2.04 -27.52 16 7 C 0.25 12.10 4.73 85.63 0.41 12.51 16 8 C -0.54 -26.68 6.57 25.60 0.17 -26.51 16 9 H 0.06 2.82 7.75 -2.91 -0.02 2.80 16 10 C 0.03 1.68 5.46 84.65 0.46 2.14 16 11 N -0.91 -48.25 13.29 21.45 0.28 -47.97 16 12 Si 0.95 39.54 29.54 68.60 2.03 41.57 16 13 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 15 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 16 C 0.15 5.60 5.77 86.38 0.50 6.10 16 17 C -0.18 -6.06 6.01 -10.79 -0.06 -6.13 16 18 C -0.17 -4.87 10.18 30.62 0.31 -4.56 16 19 C -0.15 -3.83 10.25 30.62 0.31 -3.52 16 20 C -0.05 -2.00 7.78 22.56 0.18 -1.82 16 21 C -0.13 -4.35 10.02 22.20 0.22 -4.13 16 22 C -0.05 -1.46 9.69 22.53 0.22 -1.24 16 23 C -0.05 -1.64 5.87 -20.07 -0.12 -1.76 16 24 C 0.22 6.35 7.78 137.39 1.07 7.42 16 25 N -0.29 -8.41 9.18 -52.17 -0.48 -8.89 16 26 N -0.06 -1.34 13.47 37.02 0.50 -0.84 16 27 N -0.20 -3.26 7.90 37.02 0.29 -2.96 16 28 H 0.49 2.66 8.96 -347.54 -3.12 -0.46 16 29 N -0.29 -6.62 12.07 -52.12 -0.63 -7.25 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.10 3.18 5.63 -2.39 -0.01 3.16 16 32 H 0.05 1.83 6.55 -2.39 -0.02 1.82 16 33 H 0.02 0.88 8.07 -2.39 -0.02 0.86 16 34 H 0.03 1.35 6.15 -2.39 -0.01 1.34 16 35 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 36 H 0.08 2.94 8.11 -2.39 -0.02 2.92 16 37 H 0.07 2.81 6.97 -2.39 -0.02 2.80 16 38 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.09 2.63 8.04 -2.39 -0.02 2.61 16 40 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.14 6.18 5.23 -2.91 -0.02 6.17 16 44 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 45 H 0.16 3.62 7.87 -2.91 -0.02 3.59 16 Total: -1.00 -63.70 376.16 2.40 -61.30 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -2.06 Total: 25.60 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 4.56 Total: -5.88 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -2.07 Total: -95.43 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.06 Total: -27.17 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -63.70 2.40 -61.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609380407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.279 kcal (2) G-P(sol) polarization free energy of solvation -63.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds