Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31806 * 119.08530 * 2 1 4 4 C 1.32500 * 120.98767 * 179.97438 * 3 2 1 5 5 C 1.38212 * 119.18999 * 359.72666 * 4 3 2 6 6 C 1.50695 * 120.83316 * 180.26903 * 5 4 3 7 7 C 1.39501 * 118.33300 * 0.53515 * 5 4 3 8 8 N 1.39014 * 120.52056 * 179.73642 * 7 5 4 9 9 C 1.34777 * 119.99661 * 180.02562 * 8 7 5 10 10 O 1.21573 * 120.00276 * 359.72038 * 9 8 7 11 11 N 1.34775 * 119.99585 * 179.72176 * 9 8 7 12 12 C 1.46496 * 120.00462 * 0.02562 * 11 9 8 13 13 C 1.50699 * 109.47352 * 89.99372 * 12 11 9 14 14 H 1.07993 * 120.00228 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00077 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99915 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46977 * 59.99841 * 17 15 13 19 19 H 1.48496 * 109.47067 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47166 * 299.99854 * 17 15 13 21 21 C 1.46507 * 119.99876 * 179.97438 * 11 9 8 22 22 C 1.50701 * 109.46693 * 90.00409 * 21 11 9 23 23 C 1.38221 * 119.61898 * 95.00309 * 22 21 11 24 24 C 1.38627 * 119.16219 * 179.97438 * 23 22 21 25 25 C 1.38673 * 118.41736 * 0.02562 * 24 23 22 26 26 C 1.38175 * 119.16656 * 359.97438 * 25 24 23 27 27 N 1.31859 * 119.61639 * 274.72451 * 22 21 11 28 28 N 1.31746 * 119.08880 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46958 * 270.01916 * 1 2 3 30 30 H 1.09001 * 109.47402 * 30.01482 * 1 2 3 31 31 H 1.08994 * 109.47616 * 150.02157 * 1 2 3 32 32 H 1.08004 * 120.40671 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.47870 * 270.27482 * 6 5 4 34 34 H 1.09004 * 109.47102 * 30.27695 * 6 5 4 35 35 H 1.08999 * 109.47323 * 150.26621 * 6 5 4 36 36 H 0.97001 * 119.99793 * 359.71913 * 8 7 5 37 37 H 1.09002 * 109.47236 * 209.99964 * 12 11 9 38 38 H 1.09003 * 109.46685 * 329.99558 * 12 11 9 39 39 H 0.97007 * 120.00044 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46892 * 210.00049 * 21 11 9 41 41 H 1.08999 * 109.46909 * 330.00720 * 21 11 9 42 42 H 1.08002 * 120.42106 * 359.95434 * 23 22 21 43 43 H 1.08005 * 120.79003 * 180.02562 * 24 23 22 44 44 H 1.08007 * 120.41668 * 180.02562 * 25 24 23 45 45 H 1.07997 * 119.61798 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1477 1.1518 0.0000 4 6 3.4719 1.1958 0.0005 5 6 4.1857 0.0123 0.0068 6 6 5.6926 0.0191 0.0137 7 6 3.4761 -1.1888 0.0009 8 7 4.1481 -2.4057 0.0014 9 6 3.4520 -3.5598 -0.0049 10 8 2.2365 -3.5366 -0.0057 11 7 4.1035 -4.7396 -0.0101 12 6 5.5682 -4.7677 -0.0085 13 6 6.0688 -4.7844 1.4128 14 1 5.3662 -4.7755 2.2329 15 6 7.4238 -4.8111 1.6663 16 7 8.2795 -4.8224 0.6676 17 14 8.0443 -4.8325 3.4281 18 1 7.5259 -6.0395 4.1207 19 1 9.5290 -4.8608 3.4296 20 1 7.5712 -3.6149 4.1344 21 6 3.3469 -5.9942 -0.0163 22 6 3.0882 -6.4176 -1.4393 23 6 3.9450 -7.3125 -2.0522 24 6 3.6978 -7.6960 -3.3612 25 6 2.5933 -7.1622 -4.0079 26 6 1.7814 -6.2725 -3.3308 27 7 2.0441 -5.9344 -2.0834 28 7 2.1474 -1.1513 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5134 32 1 3.9873 2.1449 0.0009 33 1 6.0607 0.0231 -1.0122 34 1 6.0495 0.9096 0.5312 35 1 6.0577 -0.8702 0.5273 36 1 5.1179 -2.4242 0.0017 37 1 5.9151 -5.6618 -0.5265 38 1 5.9491 -3.8822 -0.5174 39 1 9.2328 -4.8408 0.8458 40 1 3.9212 -6.7673 0.4942 41 1 2.3969 -5.8480 0.4977 42 1 4.7964 -7.7078 -1.5181 43 1 4.3499 -8.3940 -3.8654 44 1 2.3701 -7.4389 -5.0278 45 1 0.9191 -5.8526 -3.8273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647367277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = 72.296295 kcal Electronic energy + Delta-G solvation = -29750.354397 eV Core-core repulsion = 25768.869806 eV Total energy + Delta-G solvation = -3981.484591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03472 -40.03826 -39.12004 -35.69226 -34.94219 -33.72006 -32.91812 -32.23884 -31.94929 -30.94725 -29.94004 -27.72262 -26.35323 -25.56173 -24.04245 -23.37095 -22.85979 -21.97787 -21.48543 -19.76908 -18.12128 -17.11072 -16.85666 -16.59580 -16.24199 -15.86088 -15.44456 -15.29850 -15.09597 -14.56683 -14.36168 -14.18084 -13.98360 -13.52499 -13.30817 -13.16888 -12.98572 -12.86172 -12.80870 -12.44829 -12.24316 -12.12035 -12.08761 -11.79449 -11.59305 -11.37348 -11.04831 -10.99879 -10.85926 -10.50375 -10.31018 -9.93642 -9.66014 -9.54975 -9.45447 -9.11584 -8.83469 -8.71755 -8.49823 -8.20324 -7.77810 -6.31634 -4.41096 1.21010 1.28748 1.51239 1.52450 3.00690 3.16501 3.22070 3.25702 3.76276 3.97756 4.18794 4.26988 4.28412 4.40229 4.62318 4.68704 4.91249 4.98493 5.00977 5.03604 5.10592 5.24988 5.30637 5.36851 5.55480 5.71370 5.76278 5.76922 5.78827 5.84498 5.96028 5.98848 6.07578 6.21144 6.22762 6.34327 6.37825 6.53850 6.55046 6.91902 6.92320 6.95402 7.10705 7.35925 7.63648 7.64998 7.88752 8.31234 8.37296 8.59181 8.73607 9.23746 9.31338 10.74016 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.006586 B = 0.005419 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4250.131670 B = 5165.352169 C = 8498.514537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.333 3.667 3 N -0.554 5.554 4 C 0.165 3.835 5 C -0.243 4.243 6 C -0.103 4.103 7 C 0.436 3.564 8 N -0.653 5.653 9 C 0.697 3.303 10 O -0.532 6.532 11 N -0.606 5.606 12 C 0.239 3.761 13 C -0.545 4.545 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.187 3.813 22 C 0.118 3.882 23 C -0.156 4.156 24 C -0.082 4.082 25 C -0.182 4.182 26 C 0.092 3.908 27 N -0.455 5.455 28 N -0.503 5.503 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.425 0.575 37 H 0.041 0.959 38 H 0.026 0.974 39 H 0.267 0.733 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 2.553 -6.234 9.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.065 3.935 3 N -0.272 5.272 4 C 0.002 3.998 5 C -0.252 4.252 6 C -0.161 4.161 7 C 0.193 3.807 8 N -0.304 5.304 9 C 0.397 3.603 10 O -0.403 6.403 11 N -0.341 5.341 12 C 0.119 3.881 13 C -0.583 4.583 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.724 3.276 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.062 3.938 22 C -0.022 4.022 23 C -0.176 4.176 24 C -0.108 4.108 25 C -0.202 4.202 26 C -0.066 4.066 27 N -0.164 5.164 28 N -0.224 5.224 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.182 0.818 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.268 0.732 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.480 2.959 -5.828 10.706 hybrid contribution 2.826 -0.750 0.354 2.945 sum -5.654 2.209 -5.473 8.173 Atomic orbital electron populations 1.20477 0.86062 1.03693 1.03497 1.23126 0.97961 0.82719 0.89736 1.68197 1.09733 1.30354 1.18961 1.22744 0.89338 0.97131 0.90628 1.21035 0.98745 0.93444 1.12025 1.20575 0.89229 1.03651 1.02680 1.18336 0.88609 0.85185 0.88568 1.43133 1.11331 1.02625 1.73293 1.15907 0.85309 0.80386 0.78656 1.90998 1.10394 1.85196 1.53715 1.47340 1.08623 1.02585 1.75587 1.19371 0.72893 0.98340 0.97496 1.21505 0.91878 1.52751 0.92206 0.91834 1.24942 0.96585 0.94461 0.97578 1.69911 1.02664 1.49133 1.30976 0.86561 0.77608 0.79011 0.84382 1.19992 1.21092 1.20067 1.20019 0.97996 0.86150 0.89663 1.21953 0.90110 0.92228 0.97881 1.22117 1.00553 0.99115 0.95833 1.21538 0.96469 0.98221 0.94547 1.22093 0.96968 0.99939 1.01190 1.22764 0.98577 0.94441 0.90779 1.67669 1.18053 1.21970 1.08672 1.68377 1.06853 1.29496 1.17722 0.90039 0.90138 0.89570 0.81845 0.90962 0.90832 0.90893 0.73243 0.94084 0.95621 0.92303 0.88491 0.88901 0.84477 0.85168 0.85381 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.32 36.00 0.37 -0.68 16 2 C 0.33 5.74 7.64 -157.23 -1.20 4.54 16 3 N -0.55 -8.88 10.33 -10.79 -0.11 -8.99 16 4 C 0.17 2.35 11.00 -17.27 -0.19 2.16 16 5 C -0.24 -3.80 5.93 -104.16 -0.62 -4.42 16 6 C -0.10 -1.33 9.64 36.00 0.35 -0.99 16 7 C 0.44 8.37 7.44 -154.42 -1.15 7.22 16 8 N -0.65 -13.17 5.17 -15.67 -0.08 -13.25 16 9 C 0.70 15.38 8.24 -86.92 -0.72 14.67 16 10 O -0.53 -12.79 14.21 5.30 0.08 -12.71 16 11 N -0.61 -12.67 2.44 -182.18 -0.44 -13.11 16 12 C 0.24 5.33 4.93 -5.20 -0.03 5.31 16 13 C -0.54 -13.25 9.39 -34.44 -0.32 -13.58 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -22.80 13.29 55.43 0.74 -22.06 16 17 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 19 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.19 3.48 5.72 -5.19 -0.03 3.45 16 22 C 0.12 2.07 6.36 -82.59 -0.53 1.54 16 23 C -0.16 -2.36 9.72 -39.44 -0.38 -2.74 16 24 C -0.08 -1.05 10.18 -39.28 -0.40 -1.45 16 25 C -0.18 -2.26 10.11 -39.44 -0.40 -2.66 16 26 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 27 N -0.45 -8.30 10.27 -9.48 -0.10 -8.40 16 28 N -0.50 -10.14 7.93 -9.89 -0.08 -10.22 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.16 1.68 8.06 -52.48 -0.42 1.25 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.07 1.06 6.68 -51.93 -0.35 0.71 16 36 H 0.43 8.26 4.56 -40.82 -0.19 8.07 16 37 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.03 0.60 6.36 -51.93 -0.33 0.26 16 39 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 40 H 0.10 1.65 7.97 -51.93 -0.41 1.23 16 41 H 0.09 1.81 7.42 -51.93 -0.39 1.42 16 42 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 44 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 45 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -31.66 385.90 -10.60 -42.25 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.85 Total: 10.99 kcal Atomic # 6 Polarization: 20.66 SS G_CDS: -5.54 Total: 15.12 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -0.08 Total: -76.03 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.66 -10.60 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647367277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.550 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds