Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34122 * 125.98847 * 2 1 4 4 C 1.30497 * 109.25664 * 180.11479 * 3 2 1 5 5 C 1.50702 * 125.65364 * 179.89226 * 4 3 2 6 6 H 1.09006 * 109.99375 * 145.78652 * 5 4 3 7 7 C 1.54313 * 109.77644 * 266.94386 * 5 4 3 8 8 C 1.55158 * 102.86127 * 141.88492 * 7 5 4 9 9 C 1.54910 * 101.58148 * 324.30354 * 8 7 5 10 10 N 1.47022 * 109.87824 * 24.69808 * 5 4 3 11 11 S 1.65599 * 125.65040 * 61.67696 * 10 5 4 12 12 O 1.42105 * 104.27655 * 153.64269 * 11 10 5 13 13 O 1.42101 * 104.27764 * 25.78706 * 11 10 5 14 14 C 1.81395 * 104.44748 * 269.71574 * 11 10 5 15 15 C 1.52999 * 109.46986 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.47213 * 180.02562 * 15 14 11 17 17 C 1.50706 * 109.47044 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00265 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99848 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99731 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99899 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47314 * 89.99401 * 21 19 17 23 23 H 1.48505 * 109.47193 * 209.99658 * 21 19 17 24 24 H 1.48504 * 109.47052 * 329.99221 * 21 19 17 25 25 N 1.35048 * 108.69523 * 359.63322 * 4 3 2 26 26 H 0.97005 * 126.39450 * 180.20307 * 25 4 3 27 27 C 1.34668 * 125.98942 * 179.70446 * 2 1 3 28 28 C 1.50703 * 126.58739 * 359.97438 * 27 2 1 29 29 H 1.08993 * 109.47248 * 270.29670 * 1 2 3 30 30 H 1.09000 * 109.46744 * 30.29709 * 1 2 3 31 31 H 1.09002 * 109.47145 * 150.29650 * 1 2 3 32 32 H 1.08997 * 110.92090 * 23.47364 * 7 5 4 33 33 H 1.08998 * 110.59002 * 260.14581 * 7 5 4 34 34 H 1.09000 * 111.00158 * 206.23068 * 8 7 5 35 35 H 1.08996 * 111.00639 * 82.37730 * 8 7 5 36 36 H 1.08999 * 110.36993 * 278.16931 * 9 8 7 37 37 H 1.09005 * 110.36769 * 155.84807 * 9 8 7 38 38 H 1.09003 * 109.47393 * 299.99669 * 14 11 10 39 39 H 1.08994 * 109.47678 * 60.00285 * 14 11 10 40 40 H 1.09004 * 109.47080 * 299.99725 * 15 14 11 41 41 H 1.09005 * 109.47285 * 59.99790 * 15 14 11 42 42 H 1.09003 * 109.47218 * 299.99466 * 16 15 14 43 43 H 1.08995 * 109.47220 * 59.99596 * 16 15 14 44 44 H 0.97002 * 119.99124 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.47290 * 270.01747 * 28 27 2 46 46 H 1.09003 * 109.47500 * 30.02239 * 28 27 2 47 47 H 1.09004 * 109.47076 * 150.02119 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 -0.0025 5 6 4.7387 1.6293 -0.0056 6 1 5.5522 1.1862 0.5689 7 6 5.1964 1.8858 -1.4568 8 6 5.6045 3.3825 -1.4309 9 6 4.5589 3.9731 -0.4523 10 7 4.3692 2.9299 0.5721 11 16 3.8354 3.1821 2.1192 12 8 4.2029 4.5253 2.4022 13 8 4.3843 2.1008 2.8600 14 6 2.0317 3.0259 2.0067 15 6 1.4138 3.2415 3.3897 16 6 -0.1075 3.1091 3.2949 17 6 -0.7161 3.3221 4.6571 18 1 -0.0813 3.5305 5.5056 19 6 -2.0833 3.2497 4.8203 20 7 -2.8562 2.9954 3.7871 21 14 -2.8375 3.5130 6.5088 22 1 -3.1409 4.9546 6.6962 23 1 -4.0913 2.7248 6.6193 24 1 -1.8800 3.0688 7.5534 25 7 3.5912 -0.6401 0.0041 26 1 4.3913 -1.1886 0.0068 27 6 2.2984 -1.0896 0.0056 28 6 1.8472 -2.5275 0.0136 29 1 -0.3633 0.0053 1.0276 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3633 -0.8926 -0.5092 32 1 4.3781 1.7213 -2.1578 33 1 6.0513 1.2571 -1.7059 34 1 5.5104 3.8303 -2.4201 35 1 6.6157 3.5050 -1.0428 36 1 3.6212 4.1693 -0.9721 37 1 4.9396 4.8873 0.0033 38 1 1.6445 3.7746 1.3155 39 1 1.7750 2.0303 1.6450 40 1 1.8009 2.4930 4.0812 41 1 1.6705 4.2373 3.7511 42 1 -0.4950 3.8573 2.6034 43 1 -0.3638 2.1132 2.9337 44 1 -3.8181 2.9449 3.9020 45 1 1.7385 -2.8685 1.0431 46 1 0.8892 -2.6106 -0.4998 47 1 2.5876 -3.1435 -0.4969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666111152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = -27.181177 kcal Electronic energy + Delta-G solvation = -29205.106166 eV Core-core repulsion = 25322.459108 eV Total energy + Delta-G solvation = -3882.647057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29844 -38.60426 -36.77508 -35.61620 -34.49844 -33.24816 -32.82387 -32.01548 -31.08904 -29.64054 -28.45650 -27.59063 -25.06443 -23.63254 -22.74737 -21.70798 -20.98892 -20.31600 -19.88608 -18.57313 -17.69654 -17.36064 -16.44153 -16.17803 -15.76919 -15.39303 -15.26238 -14.57546 -14.41562 -14.02200 -13.90826 -13.63128 -13.36139 -13.16595 -12.94407 -12.73480 -12.65027 -12.51247 -12.38738 -12.10825 -11.92217 -11.85814 -11.76332 -11.67657 -11.56298 -11.54962 -11.36491 -11.07719 -11.01226 -10.85145 -10.75684 -10.33956 -9.92047 -9.87562 -9.54339 -9.44408 -9.12770 -8.82217 -8.31382 -8.09590 -5.96617 -3.98792 0.62571 1.88304 2.69024 2.99086 3.10384 3.35350 3.41048 3.45565 3.98027 4.16373 4.27693 4.34956 4.49794 4.67580 4.70138 4.82373 4.94121 5.01345 5.18133 5.28151 5.33507 5.37616 5.39030 5.45309 5.46982 5.55873 5.61307 5.63248 5.66377 5.71306 5.91991 5.95775 6.01070 6.10798 6.18937 6.23125 6.28955 6.34143 6.50706 6.73887 6.87486 7.04284 7.28252 7.71096 7.83214 8.03174 8.04686 8.44329 9.07364 9.64813 11.14429 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.004050 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.246452 B = 6911.164264 C = 8608.059978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.014 3.986 3 N -0.470 5.470 4 C 0.180 3.820 5 C 0.243 3.757 6 H 0.094 0.906 7 C -0.118 4.118 8 C -0.126 4.126 9 C 0.115 3.885 10 N -0.995 5.995 11 S 2.608 3.392 12 O -0.964 6.964 13 O -0.966 6.966 14 C -0.599 4.599 15 C -0.105 4.105 16 C 0.037 3.963 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 N -0.556 5.556 26 H 0.417 0.583 27 C -0.026 4.026 28 C -0.075 4.075 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.153 0.847 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.260 0.740 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.361 -8.599 -16.011 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.115 4.115 3 N -0.191 5.191 4 C -0.085 4.085 5 C 0.133 3.867 6 H 0.112 0.888 7 C -0.158 4.158 8 C -0.165 4.165 9 C -0.010 4.010 10 N -0.830 5.830 11 S 2.708 3.292 12 O -0.955 6.955 13 O -0.957 6.957 14 C -0.732 4.732 15 C -0.145 4.145 16 C -0.002 4.002 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 N -0.160 5.160 26 H 0.254 0.746 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.144 0.856 39 H 0.171 0.829 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.427 -7.580 -15.227 23.646 hybrid contribution -0.465 -1.126 0.543 1.334 sum 15.961 -8.706 -14.684 23.370 Atomic orbital electron populations 1.20130 0.87055 1.02446 1.03448 1.20651 0.96707 0.87583 1.06522 1.70047 0.99282 1.30470 1.19263 1.23564 0.95712 0.81973 1.07255 1.19406 0.89544 0.81751 0.95957 0.88789 1.22702 1.01601 0.97492 0.94034 1.22760 0.99285 0.94578 0.99886 1.22063 0.99164 0.90850 0.88904 1.58651 1.82050 1.12169 1.30092 1.05161 0.78878 0.73808 0.71367 1.93540 1.82900 1.36826 1.82220 1.93521 1.77526 1.56039 1.68580 1.30691 1.20990 1.13743 1.07780 1.21497 1.02013 1.00933 0.90024 1.18997 0.86412 0.97653 0.97131 1.21291 0.91897 1.48374 0.94644 0.92579 1.24993 0.97294 0.95273 0.96708 1.69971 1.04315 1.49410 1.29621 0.86605 0.78672 0.78179 0.84634 1.20624 1.21223 1.19845 1.42882 1.08233 1.07546 1.57320 0.74565 1.21025 0.83385 0.97492 1.12142 1.20225 1.01785 0.88321 1.03003 0.90286 0.90852 0.91613 0.89861 0.89946 0.89669 0.90390 0.91010 0.89513 0.85607 0.82937 0.92302 0.92156 0.96142 0.96094 0.93046 0.90666 0.89806 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.22 36.01 0.37 -0.65 16 2 C 0.01 0.21 6.93 -82.85 -0.57 -0.37 16 3 N -0.47 -7.23 7.56 -7.07 -0.05 -7.28 16 4 C 0.18 2.32 6.72 -155.41 -1.04 1.27 16 5 C 0.24 2.71 3.29 -68.11 -0.22 2.49 16 6 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 7 C -0.12 -0.90 6.46 -24.90 -0.16 -1.06 16 8 C -0.13 -0.92 7.08 -24.58 -0.17 -1.09 16 9 C 0.12 1.22 7.07 -2.53 -0.02 1.21 16 10 N -0.99 -13.44 3.15 -105.63 -0.33 -13.77 16 11 S 2.61 46.37 5.37 -107.50 -0.58 45.80 16 12 O -0.96 -19.11 17.28 -57.54 -0.99 -20.10 16 13 O -0.97 -19.27 17.60 -57.54 -1.01 -20.28 16 14 C -0.60 -11.44 5.53 37.16 0.21 -11.23 16 15 C -0.10 -2.38 5.16 -26.73 -0.14 -2.52 16 16 C 0.04 0.98 4.97 -27.88 -0.14 0.84 16 17 C -0.52 -15.31 9.11 -34.44 -0.31 -15.63 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 21 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 N -0.56 -5.90 6.15 -6.54 -0.04 -5.94 16 26 H 0.42 2.91 8.96 -40.82 -0.37 2.54 16 27 C -0.03 -0.30 7.24 -81.61 -0.59 -0.89 16 28 C -0.08 -0.62 10.22 36.01 0.37 -0.25 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.71 7.17 -51.93 -0.37 0.33 16 32 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.93 7.67 -51.93 -0.40 0.54 16 38 H 0.13 2.24 8.14 -51.92 -0.42 1.82 16 39 H 0.15 2.96 4.97 -51.93 -0.26 2.70 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.62 7.18 -51.93 -0.37 0.24 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -37.45 390.56 -11.58 -49.03 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.63 Total: 2.10 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.53 Total: -26.26 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.31 Total: -53.23 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -2.01 Total: -40.38 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 46.37 SS G_CDS: -0.58 Total: 45.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.45 -11.58 -49.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666111152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.845 kcal (2) G-P(sol) polarization free energy of solvation -37.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds