Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30260 * 125.61801 * 2 1 4 4 C 1.34485 * 108.69814 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.16042 * 179.97438 * 4 3 2 6 6 C 1.34330 * 107.66950 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.44066 * 179.97438 * 6 4 3 8 8 N 1.46898 * 109.46913 * 90.00309 * 7 6 4 9 9 C 1.46902 * 110.99469 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46665 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47167 * 64.99944 * 10 9 8 12 12 C 1.53003 * 109.46927 * 184.99818 * 10 9 8 13 13 N 1.46503 * 109.47064 * 304.99506 * 10 9 8 14 14 C 1.46498 * 120.00129 * 300.00436 * 13 10 9 15 15 C 1.34775 * 119.99892 * 120.00218 * 13 10 9 16 16 O 1.21283 * 119.99784 * 359.97438 * 15 13 10 17 17 C 1.50698 * 120.00028 * 180.02562 * 15 13 10 18 18 S 1.81002 * 109.47125 * 179.97438 * 17 15 13 19 19 C 1.76194 * 100.00113 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00121 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00240 * 180.02562 * 19 18 17 22 22 N 1.31636 * 120.00278 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99805 * 359.97438 * 21 19 18 24 24 H 1.48510 * 109.46860 * 90.00272 * 23 21 19 25 25 H 1.48495 * 109.47322 * 209.99952 * 23 21 19 26 26 H 1.48497 * 109.47579 * 330.00470 * 23 21 19 27 27 O 1.33967 * 125.62312 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46566 * 90.02465 * 1 2 3 29 29 H 1.09003 * 109.46769 * 210.02116 * 1 2 3 30 30 H 1.09001 * 109.47149 * 330.02647 * 1 2 3 31 31 H 1.09003 * 109.47326 * 89.98074 * 5 4 3 32 32 H 1.08997 * 109.47260 * 209.97193 * 5 4 3 33 33 H 1.08997 * 109.47671 * 329.97682 * 5 4 3 34 34 H 1.08997 * 109.46564 * 210.00722 * 7 6 4 35 35 H 1.09004 * 109.46906 * 329.99745 * 7 6 4 36 36 H 1.00903 * 110.99506 * 303.94882 * 8 7 6 37 37 H 1.08997 * 109.47026 * 299.99601 * 9 8 7 38 38 H 1.08998 * 109.47655 * 59.99935 * 9 8 7 39 39 H 1.08998 * 109.47094 * 60.00081 * 12 10 9 40 40 H 1.08999 * 109.46960 * 179.97438 * 12 10 9 41 41 H 1.08997 * 109.46896 * 299.99895 * 12 10 9 42 42 H 1.08992 * 109.47376 * 89.99917 * 14 13 10 43 43 H 1.08998 * 109.46971 * 210.00450 * 14 13 10 44 44 H 1.09005 * 109.46827 * 329.99859 * 14 13 10 45 45 H 1.09000 * 109.46714 * 299.99736 * 17 15 13 46 46 H 1.08995 * 109.47498 * 59.99978 * 17 15 13 47 47 H 0.96991 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7570 1.5727 0.0002 6 6 3.5698 -0.6757 0.0015 7 6 4.7938 -1.5549 0.0018 8 7 5.1917 -1.8396 1.3869 9 6 6.3847 -2.6959 1.4264 10 6 6.7674 -2.9704 2.8821 11 1 5.9795 -3.5513 3.3616 12 6 8.0790 -3.7570 2.9250 13 7 6.9370 -1.6993 3.5905 14 6 7.9425 -0.7358 3.1359 15 6 6.1678 -1.4164 4.6605 16 8 5.3350 -2.2139 5.0366 17 6 6.3418 -0.1086 5.3889 18 16 5.1727 -0.0260 6.7682 19 6 5.5843 1.5567 7.4239 20 1 6.3628 2.1465 6.9627 21 6 4.9089 2.0452 8.5337 22 7 5.2161 3.2279 9.0233 23 14 3.5630 1.0249 9.3318 24 1 4.1556 0.1593 10.3830 25 1 2.5549 1.9272 9.9438 26 1 2.9087 0.1770 8.3031 27 8 2.2873 -1.0890 0.0005 28 1 -0.3632 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 5.0471 1.7920 1.0278 32 1 5.5824 1.0789 -0.5126 33 1 4.5132 2.5020 -0.5146 34 1 4.5695 -2.4899 -0.5114 35 1 5.6080 -1.0444 -0.5126 36 1 5.3427 -0.9855 1.9026 37 1 6.1719 -3.6389 0.9230 38 1 7.2098 -2.1929 0.9221 39 1 8.8669 -3.1761 2.4456 40 1 8.3519 -3.9523 3.9621 41 1 7.9529 -4.7027 2.3979 42 1 7.4950 -0.0604 2.4068 43 1 8.3066 -0.1615 3.9877 44 1 8.7741 -1.2688 2.6749 45 1 7.3603 -0.0382 5.7707 46 1 6.1529 0.7172 4.7031 47 1 4.7439 3.5694 9.7986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666853710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = -13.018809 kcal Electronic energy + Delta-G solvation = -27829.608540 eV Core-core repulsion = 23947.575609 eV Total energy + Delta-G solvation = -3882.032931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.43236 -39.89989 -37.24339 -35.48344 -35.13078 -33.09172 -32.42254 -31.99461 -29.59680 -28.86960 -28.46331 -26.93736 -25.60705 -25.36023 -23.49207 -21.85906 -21.66587 -20.68685 -19.07808 -17.73711 -17.14036 -16.99840 -16.90804 -16.01995 -15.81086 -15.44413 -15.00597 -14.88894 -14.73107 -14.29834 -13.97882 -13.66359 -13.54182 -13.36586 -13.24038 -13.21993 -13.14040 -12.83817 -12.78272 -12.63022 -12.56795 -12.34931 -12.28381 -12.05572 -12.01239 -11.66258 -11.24157 -11.08244 -10.99200 -10.97561 -10.56779 -10.56071 -9.83994 -9.42195 -8.98690 -8.86817 -8.71265 -8.52748 -8.46579 -6.89677 -6.27531 -3.98826 1.27533 2.49643 2.54282 2.71273 2.97095 3.19160 3.34471 3.52743 3.60364 3.82221 3.93175 4.34828 4.50797 4.54519 4.64693 4.69241 4.79591 4.91414 4.95237 4.98487 5.06403 5.11723 5.13441 5.15444 5.20563 5.26628 5.30782 5.32280 5.32775 5.41387 5.47735 5.53483 5.56674 5.60709 5.77720 5.88155 5.91087 5.94661 6.00269 6.01853 6.23673 6.55562 6.66803 7.03127 7.44317 7.65016 7.95516 8.42440 8.47531 9.19014 10.81748 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008282 B = 0.003636 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.925883 B = 7699.106907 C = 9789.037303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.193 3.807 3 N -0.482 5.482 4 C -0.003 4.003 5 C -0.074 4.074 6 C -0.048 4.048 7 C 0.148 3.852 8 N -0.681 5.681 9 C 0.053 3.947 10 C 0.137 3.863 11 H 0.110 0.890 12 C -0.160 4.160 13 N -0.620 5.620 14 C 0.075 3.925 15 C 0.533 3.467 16 O -0.510 6.510 17 C -0.121 4.121 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.087 0.913 21 C 0.097 3.903 22 N -0.881 5.881 23 Si 0.855 3.145 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 O -0.192 6.192 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.350 0.650 37 H 0.084 0.916 38 H 0.035 0.965 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 -10.154 -23.292 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.014 4.014 3 N -0.212 5.212 4 C -0.123 4.123 5 C -0.131 4.131 6 C -0.101 4.101 7 C 0.019 3.981 8 N -0.314 5.314 9 C -0.077 4.077 10 C 0.033 3.967 11 H 0.128 0.872 12 C -0.218 4.218 13 N -0.357 5.357 14 C -0.068 4.068 15 C 0.321 3.679 16 O -0.383 6.383 17 C -0.271 4.271 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.105 0.895 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.680 3.320 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 O -0.079 6.079 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.170 0.830 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.513 -11.154 -22.523 25.138 hybrid contribution 1.439 0.850 -0.178 1.681 sum 1.952 -10.304 -22.700 25.006 Atomic orbital electron populations 1.20265 0.81291 1.05426 1.04431 1.26240 0.96448 0.78673 0.99996 1.70363 1.01554 1.30337 1.18967 1.21525 0.93567 0.92056 1.05196 1.20154 0.91595 0.98103 1.03287 1.22855 0.83798 0.94327 1.09116 1.20174 0.89008 0.97676 0.91266 1.60358 1.36682 1.22848 1.11514 1.22340 0.90454 0.97972 0.96887 1.21076 0.98839 0.85456 0.91294 0.87165 1.22105 0.96788 0.99965 1.02956 1.47886 1.38115 1.18803 1.30853 1.21772 0.91629 0.92568 1.00856 1.20280 0.80083 0.88191 0.79362 1.90697 1.33559 1.49307 1.64758 1.23308 1.05088 0.96948 1.01765 1.84823 1.47700 1.26633 1.32402 1.22308 1.25423 1.01521 1.17570 0.89455 1.24695 0.96463 0.94535 0.95502 1.69936 1.41209 1.17076 1.23524 0.86751 0.82477 0.81090 0.81655 1.19208 1.19940 1.15914 1.84377 1.16397 1.37494 1.69645 0.89077 0.89211 0.87971 0.90291 0.91121 0.90392 0.89156 0.91895 0.82986 0.89774 0.94714 0.92363 0.91665 0.91391 0.93225 0.90366 0.91102 0.88655 0.88738 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.08 16 2 C 0.19 2.50 8.34 -12.94 -0.11 2.39 16 3 N -0.48 -7.08 11.30 -7.36 -0.08 -7.16 16 4 C 0.00 -0.03 7.11 -82.81 -0.59 -0.62 16 5 C -0.07 -0.74 10.22 36.00 0.37 -0.38 16 6 C -0.05 -0.60 6.90 -35.69 -0.25 -0.85 16 7 C 0.15 1.42 6.02 -4.98 -0.03 1.39 16 8 N -0.68 -7.72 6.48 -115.06 -0.75 -8.46 16 9 C 0.05 0.47 5.03 -3.82 -0.02 0.45 16 10 C 0.14 1.49 2.95 -67.93 -0.20 1.29 16 11 H 0.11 1.55 6.90 -51.93 -0.36 1.19 16 12 C -0.16 -1.31 9.17 37.16 0.34 -0.97 16 13 N -0.62 -7.79 1.83 -173.93 -0.32 -8.11 16 14 C 0.08 0.69 9.38 59.85 0.56 1.25 16 15 C 0.53 9.51 7.69 -10.99 -0.08 9.42 16 16 O -0.51 -11.12 15.19 5.55 0.08 -11.03 16 17 C -0.12 -2.35 4.71 36.00 0.17 -2.18 16 18 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 19 C -0.52 -15.10 10.04 30.94 0.31 -14.78 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 22 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 23 Si 0.86 22.08 27.74 -169.99 -4.71 17.37 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.24 -6.10 6.74 56.52 0.38 -5.72 16 27 O -0.19 -2.66 10.77 5.38 0.06 -2.60 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.52 7.16 -51.93 -0.37 0.15 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.46 7.17 -51.93 -0.37 0.09 16 36 H 0.35 4.46 7.83 -39.29 -0.31 4.15 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.24 7.84 -51.93 -0.41 -0.16 16 39 H 0.06 0.39 6.66 -51.93 -0.35 0.05 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 43 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 44 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 45 H 0.10 1.72 7.40 -51.92 -0.38 1.34 16 46 H 0.09 1.73 8.11 -51.92 -0.42 1.31 16 47 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -37.10 400.04 -7.59 -44.69 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.44 Total: 1.80 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.76 Total: -0.91 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.37 Total: -49.70 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.14 Total: -13.63 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.10 -7.59 -44.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666853710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.671 kcal (2) G-P(sol) polarization free energy of solvation -37.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds