Wall clock time and date at job start Sat Apr 11 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30252 * 125.62122 * 2 1 4 4 C 1.34478 * 108.70309 * 180.18999 * 3 2 1 5 5 C 1.50697 * 126.16671 * 179.82961 * 4 3 2 6 6 N 1.46906 * 109.46898 * 269.68729 * 5 4 3 7 7 C 1.46903 * 111.00001 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46956 * 318.67589 * 7 6 5 9 9 C 1.52994 * 109.47097 * 78.67925 * 7 6 5 10 10 C 1.52994 * 109.46845 * 198.67713 * 7 6 5 11 11 N 1.46505 * 109.47215 * 56.70254 * 10 7 6 12 12 C 1.46499 * 120.00392 * 83.69417 * 11 10 7 13 13 C 1.34782 * 119.99434 * 263.69642 * 11 10 7 14 14 O 1.21276 * 120.00283 * 359.97438 * 13 11 10 15 15 C 1.50706 * 119.99593 * 179.72420 * 13 11 10 16 16 S 1.81000 * 109.47079 * 179.97438 * 15 13 11 17 17 C 1.76191 * 100.00149 * 179.97438 * 16 15 13 18 18 H 1.08008 * 119.99953 * 0.02562 * 17 16 15 19 19 C 1.38795 * 120.00281 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99966 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00424 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46681 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47030 * 120.00035 * 21 19 17 24 24 H 1.48491 * 109.47499 * 240.00469 * 21 19 17 25 25 C 1.34328 * 107.66795 * 359.56103 * 4 3 2 26 26 C 1.50704 * 126.44622 * 180.28195 * 25 4 3 27 27 O 1.33971 * 125.61770 * 179.70605 * 2 1 3 28 28 H 1.09007 * 109.47070 * 180.31222 * 1 2 3 29 29 H 1.08995 * 109.46965 * 300.31602 * 1 2 3 30 30 H 1.08998 * 109.47210 * 60.31803 * 1 2 3 31 31 H 1.09000 * 109.47411 * 149.69211 * 5 4 3 32 32 H 1.09003 * 109.47256 * 29.68559 * 5 4 3 33 33 H 1.00904 * 110.99750 * 56.04699 * 6 5 4 34 34 H 1.09001 * 109.46947 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.47131 * 300.00106 * 9 7 6 36 36 H 1.09003 * 109.47492 * 59.99992 * 9 7 6 37 37 H 1.08992 * 109.47652 * 296.70218 * 10 7 6 38 38 H 1.09005 * 109.47355 * 176.69736 * 10 7 6 39 39 H 1.09000 * 109.46990 * 265.10161 * 12 11 10 40 40 H 1.08999 * 109.46637 * 25.10007 * 12 11 10 41 41 H 1.09003 * 109.46763 * 145.09987 * 12 11 10 42 42 H 1.08993 * 109.46851 * 299.99746 * 15 13 11 43 43 H 1.09003 * 109.47331 * 59.99866 * 15 13 11 44 44 H 0.97003 * 119.99996 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.46710 * 90.00249 * 26 25 4 46 46 H 1.08992 * 109.47128 * 209.99857 * 26 25 4 47 47 H 1.09000 * 109.46893 * 330.00542 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0042 5 6 4.7570 1.5726 -0.0093 6 7 5.1481 1.8594 -1.3961 7 6 6.3226 2.7407 -1.4403 8 1 6.2224 3.5178 -0.6824 9 6 7.5855 1.9215 -1.1671 10 6 6.4232 3.3871 -2.8233 11 7 5.1815 4.1067 -3.1176 12 6 4.9894 5.4707 -2.6189 13 6 4.2158 3.5137 -3.8472 14 8 4.3749 2.3846 -4.2604 15 6 2.9358 4.2516 -4.1447 16 16 1.8486 3.1979 -5.1366 17 6 0.4699 4.2777 -5.3308 18 1 0.4890 5.2628 -4.8883 19 6 -0.6402 3.8629 -6.0532 20 7 -0.6633 2.6625 -6.5929 21 14 -2.1022 5.0074 -6.2585 22 1 -1.8289 6.2895 -5.5607 23 1 -2.3273 5.2687 -7.7029 24 1 -3.3123 4.3743 -5.6755 25 6 3.5698 -0.6757 0.0029 26 6 4.7937 -1.5550 0.0076 27 8 2.2872 -1.0891 0.0056 28 1 -0.3633 -1.0277 0.0056 29 1 -0.3633 0.5187 0.8871 30 1 -0.3633 0.5089 -0.8928 31 1 5.5823 1.0820 0.5068 32 1 4.5131 2.5051 0.4996 33 1 4.3784 2.2558 -1.9142 34 1 8.4570 2.5754 -1.2004 35 1 7.5138 1.4609 -0.1818 36 1 7.6856 1.1445 -1.9249 37 1 6.5820 2.6141 -3.5751 38 1 7.2600 4.0855 -2.8380 39 1 4.4437 5.4393 -1.6759 40 1 5.9605 5.9400 -2.4613 41 1 4.4212 6.0477 -3.3486 42 1 2.4389 4.5086 -3.2093 43 1 3.1620 5.1629 -4.6984 44 1 -1.4393 2.3724 -7.0975 45 1 5.0887 -1.7615 1.0364 46 1 4.5695 -2.4924 -0.5012 47 1 5.6081 -1.0469 -0.5088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676304546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:04 Heat of formation + Delta-G solvation = -13.675665 kcal Electronic energy + Delta-G solvation = -28200.810134 eV Core-core repulsion = 24318.748720 eV Total energy + Delta-G solvation = -3882.061414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.19121 -39.75425 -37.15779 -35.29726 -34.40919 -33.30348 -32.39898 -31.02773 -30.05194 -29.34166 -27.32093 -26.53688 -25.61383 -25.13105 -24.05596 -21.54660 -20.68334 -20.47689 -19.17690 -17.64598 -16.77423 -16.69610 -16.60999 -16.11592 -15.90033 -15.30510 -14.78111 -14.68757 -14.40611 -14.08352 -13.92870 -13.48426 -13.37922 -13.24600 -12.92783 -12.84529 -12.71988 -12.69030 -12.59137 -12.45147 -12.36442 -12.18940 -12.09792 -11.88979 -11.58666 -11.54434 -11.06978 -11.04973 -10.98011 -10.86066 -10.72868 -10.31059 -9.76702 -9.30717 -9.04568 -8.54083 -8.46699 -8.28545 -8.17666 -6.45315 -6.18839 -3.88301 1.56286 2.73051 2.79425 2.96823 3.08257 3.22751 3.27825 3.32646 3.64518 4.05128 4.22864 4.33528 4.74374 4.80100 4.84115 4.92671 5.06953 5.12197 5.16197 5.19348 5.23532 5.31280 5.34534 5.38052 5.41516 5.45839 5.46935 5.53150 5.60551 5.69206 5.71136 5.72419 5.76575 5.84883 5.93997 5.96100 6.09260 6.15875 6.17621 6.18353 6.43951 6.65098 7.06178 7.44733 7.54250 7.62694 7.91909 8.38257 8.59230 9.26605 10.88573 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008868 B = 0.003983 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.694872 B = 7028.929472 C = 9333.018734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.192 3.808 3 N -0.475 5.475 4 C -0.011 4.011 5 C 0.145 3.855 6 N -0.674 5.674 7 C 0.068 3.932 8 H 0.040 0.960 9 C -0.139 4.139 10 C 0.114 3.886 11 N -0.630 5.630 12 C 0.081 3.919 13 C 0.528 3.472 14 O -0.500 6.500 15 C -0.151 4.151 16 S -0.058 6.058 17 C -0.533 4.533 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.917 3.083 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.034 4.034 26 C -0.065 4.065 27 O -0.204 6.204 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.356 0.644 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.267 0.733 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.562 -1.594 16.478 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.015 4.015 3 N -0.205 5.205 4 C -0.131 4.131 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.043 4.043 8 H 0.058 0.942 9 C -0.197 4.197 10 C -0.009 4.009 11 N -0.368 5.368 12 C -0.062 4.062 13 C 0.316 3.684 14 O -0.372 6.372 15 C -0.301 4.301 16 S 0.169 5.831 17 C -0.681 4.681 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.743 3.257 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.088 4.088 26 C -0.121 4.121 27 O -0.092 6.092 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.179 0.821 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.805 -3.379 15.665 21.152 hybrid contribution -1.386 2.379 0.633 2.825 sum 12.419 -1.001 16.298 20.515 Atomic orbital electron populations 1.20269 0.81292 1.04512 1.05364 1.26162 0.96327 0.78440 1.00539 1.70293 1.01546 1.30435 1.18211 1.21211 0.92788 0.92055 1.07049 1.20096 0.91372 0.96017 0.90967 1.60526 1.09503 1.49473 1.11512 1.21905 0.92029 0.93365 0.96974 0.94216 1.21758 0.95572 1.00303 1.02088 1.21640 0.85807 0.96798 0.96675 1.47959 1.17916 1.15892 1.54994 1.21749 1.02056 0.82771 0.99647 1.20383 0.84324 0.86684 0.77039 1.90742 1.78960 1.17843 1.49699 1.23563 0.97127 1.04194 1.05246 1.85394 1.12540 1.20483 1.64712 1.22902 1.02881 1.02918 1.39420 0.90997 1.24970 0.98158 0.95597 0.94775 1.70036 1.30000 1.17499 1.32782 0.86146 0.81275 0.80223 0.78040 1.19632 1.20596 1.20569 1.23079 0.83796 0.94994 1.06916 1.20257 0.90516 0.98382 1.02986 1.84369 1.16611 1.37913 1.70322 0.89614 0.88805 0.87832 0.89761 0.94063 0.82133 0.92498 0.92671 0.91478 0.88556 0.90423 0.93030 0.91243 0.90810 0.89445 0.89406 0.92311 0.90431 0.90485 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.51 36.01 0.38 -0.28 16 2 C 0.19 3.03 8.34 -12.95 -0.11 2.93 16 3 N -0.48 -8.41 11.29 -7.36 -0.08 -8.49 16 4 C -0.01 -0.18 6.62 -82.81 -0.55 -0.72 16 5 C 0.14 1.93 5.65 -4.97 -0.03 1.90 16 6 N -0.67 -9.87 6.27 -107.99 -0.68 -10.55 16 7 C 0.07 0.77 2.92 -67.72 -0.20 0.57 16 8 H 0.04 0.42 7.91 -51.93 -0.41 0.01 16 9 C -0.14 -1.22 9.34 37.15 0.35 -0.88 16 10 C 0.11 1.38 5.22 -4.04 -0.02 1.36 16 11 N -0.63 -9.01 2.52 -181.57 -0.46 -9.47 16 12 C 0.08 0.88 10.19 59.85 0.61 1.49 16 13 C 0.53 10.21 6.13 -10.98 -0.07 10.14 16 14 O -0.50 -11.48 14.66 5.56 0.08 -11.40 16 15 C -0.15 -3.17 4.78 36.01 0.17 -3.00 16 16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 17 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 18 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 21 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.03 -0.49 7.39 -35.69 -0.26 -0.76 16 26 C -0.06 -0.65 10.04 36.01 0.36 -0.29 16 27 O -0.20 -3.20 10.78 5.34 0.06 -3.14 16 28 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 0.89 6.69 -51.93 -0.35 0.55 16 32 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.36 6.47 5.47 -39.29 -0.21 6.25 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.44 7.08 -51.93 -0.37 0.08 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 1.39 7.24 -51.93 -0.38 1.01 16 38 H 0.08 0.70 7.96 -51.93 -0.41 0.29 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.55 7.91 -51.93 -0.41 0.14 16 41 H 0.07 0.81 6.65 -51.93 -0.35 0.47 16 42 H 0.09 1.77 8.11 -51.92 -0.42 1.35 16 43 H 0.09 1.71 7.40 -51.91 -0.38 1.33 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 0.94 7.79 -51.93 -0.40 0.54 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -36.87 401.84 -8.13 -45.00 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.44 Total: 5.44 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 0.83 Total: -0.58 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.48 Total: -54.12 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.14 Total: -14.53 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.87 -8.13 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676304546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.326 kcal (2) G-P(sol) polarization free energy of solvation -36.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds