Wall clock time and date at job start Sat Apr 11 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30255 * 125.62076 * 2 1 4 4 C 1.34480 * 108.70055 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.16394 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.02293 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47473 * 34.99539 * 7 6 5 9 9 C 1.53003 * 109.47021 * 274.99736 * 7 6 5 10 10 C 1.53000 * 109.47187 * 154.99992 * 7 6 5 11 11 N 1.46500 * 109.47118 * 304.99849 * 10 7 6 12 12 C 1.46500 * 120.00000 * 270.00376 * 11 10 7 13 13 C 1.34781 * 119.99772 * 89.99909 * 11 10 7 14 14 O 1.21281 * 120.00156 * 359.97438 * 13 11 10 15 15 C 1.50704 * 119.99444 * 180.02562 * 13 11 10 16 16 S 1.81001 * 109.46713 * 179.97438 * 15 13 11 17 17 C 1.76198 * 100.00129 * 180.02562 * 16 15 13 18 18 H 1.08009 * 119.99825 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00206 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00230 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99762 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47280 * 59.99956 * 21 19 17 23 23 H 1.48502 * 109.46871 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47112 * 299.99570 * 21 19 17 25 25 C 1.34334 * 107.66748 * 0.25983 * 4 3 2 26 26 C 1.50694 * 126.43956 * 179.74006 * 25 4 3 27 27 O 1.33968 * 125.61891 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47133 * 89.99760 * 1 2 3 29 29 H 1.09001 * 109.47331 * 210.00519 * 1 2 3 30 30 H 1.09003 * 109.46800 * 329.99691 * 1 2 3 31 31 H 1.09001 * 109.47558 * 330.02457 * 5 4 3 32 32 H 1.08998 * 109.47216 * 210.02119 * 5 4 3 33 33 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 34 34 H 1.08993 * 109.47190 * 180.02562 * 9 7 6 35 35 H 1.08996 * 109.47234 * 300.00507 * 9 7 6 36 36 H 1.09007 * 109.47106 * 60.00477 * 9 7 6 37 37 H 1.09003 * 109.47103 * 64.99808 * 10 7 6 38 38 H 1.08994 * 109.47185 * 184.99663 * 10 7 6 39 39 H 1.08996 * 109.47390 * 89.99750 * 12 11 10 40 40 H 1.09000 * 109.46936 * 209.99907 * 12 11 10 41 41 H 1.09004 * 109.46858 * 329.99575 * 12 11 10 42 42 H 1.08997 * 109.47391 * 299.99791 * 15 13 11 43 43 H 1.08999 * 109.46947 * 60.00501 * 15 13 11 44 44 H 0.96996 * 120.00339 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47577 * 89.99785 * 26 25 4 46 46 H 1.09003 * 109.46817 * 209.99689 * 26 25 4 47 47 H 1.09006 * 109.47588 * 329.99438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5523 0.6674 0.0006 5 6 4.7571 1.5726 0.0002 6 7 5.1486 1.8672 1.3852 7 6 6.3223 2.7498 1.4240 8 1 6.2763 3.4524 0.5920 9 6 7.5961 1.9095 1.3121 10 6 6.3357 3.5228 2.7443 11 7 5.0650 4.2334 2.9070 12 6 4.9173 5.5972 2.3928 13 6 4.0317 3.6323 3.5297 14 8 4.1538 2.5030 3.9549 15 6 2.7244 4.3631 3.6965 16 16 1.5448 3.2989 4.5639 17 6 0.1483 4.3719 4.6197 18 1 0.2086 5.3597 4.1873 19 6 -1.0290 3.9480 5.2204 20 7 -1.1024 2.7443 5.7479 21 14 -2.5093 5.0858 5.2801 22 1 -2.9189 5.4383 3.8969 23 1 -3.6325 4.4010 5.9691 24 1 -2.1535 6.3225 6.0213 25 6 3.5698 -0.6758 -0.0049 26 6 4.7937 -1.5549 -0.0119 27 8 2.2873 -1.0890 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 4.5131 2.5022 -0.5139 32 1 5.5822 1.0791 -0.5134 33 1 5.3177 1.0171 1.9017 34 1 8.4670 2.5643 1.3413 35 1 7.6421 1.2068 2.1440 36 1 7.5866 1.3588 0.3714 37 1 6.4711 2.8263 3.5718 38 1 7.1553 4.2412 2.7364 39 1 4.5560 5.5610 1.3651 40 1 4.2034 6.1428 3.0099 41 1 5.8827 6.1026 2.4210 42 1 2.8876 5.2723 4.2751 43 1 2.3257 4.6230 2.7159 44 1 -1.9253 2.4479 6.1673 45 1 5.0918 -1.7711 1.0141 46 1 4.5680 -2.4877 -0.5288 47 1 5.6066 -1.0421 -0.5261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676304547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:09 Heat of formation + Delta-G solvation = -10.819268 kcal Electronic energy + Delta-G solvation = -28366.641150 eV Core-core repulsion = 24484.703598 eV Total energy + Delta-G solvation = -3881.937552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.12687 -39.29494 -37.20152 -35.10060 -34.33140 -33.29986 -32.31415 -30.89615 -30.02314 -29.15016 -27.06195 -26.40414 -25.49269 -24.98804 -24.06274 -21.53856 -21.02883 -20.35047 -18.96897 -17.50189 -16.74588 -16.65238 -16.27115 -15.77351 -15.37996 -15.26141 -14.73746 -14.70266 -14.42339 -13.88226 -13.74029 -13.57907 -13.46744 -13.02823 -12.92914 -12.85320 -12.68210 -12.63304 -12.48893 -12.41990 -12.34886 -12.15902 -12.11633 -11.72476 -11.62650 -11.35492 -10.98621 -10.95000 -10.91302 -10.76614 -10.66762 -10.15752 -9.67775 -8.98017 -8.94793 -8.44180 -8.36516 -8.04870 -7.98494 -6.32093 -6.10138 -3.77214 1.59164 2.82353 2.84924 3.18266 3.29871 3.33376 3.37564 3.51989 3.83979 4.14472 4.32559 4.35835 4.74559 4.81795 4.87284 4.97032 5.02431 5.13544 5.19046 5.23558 5.24328 5.30704 5.31642 5.44103 5.46249 5.52189 5.54700 5.59326 5.65137 5.68821 5.72315 5.77473 5.86747 5.90809 5.95784 6.08204 6.16254 6.16527 6.21420 6.37166 6.51366 6.91077 7.13657 7.51905 7.70117 7.90644 8.03085 8.46479 8.98990 9.34990 10.97173 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.004215 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.223778 B = 6641.451842 C = 8989.304329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.194 3.806 3 N -0.457 5.457 4 C 0.002 3.998 5 C 0.147 3.853 6 N -0.658 5.658 7 C 0.068 3.932 8 H 0.076 0.924 9 C -0.181 4.181 10 C 0.131 3.869 11 N -0.615 5.615 12 C 0.085 3.915 13 C 0.549 3.451 14 O -0.508 6.508 15 C -0.146 4.146 16 S -0.059 6.059 17 C -0.531 4.531 18 H 0.069 0.931 19 C 0.074 3.926 20 N -0.870 5.870 21 Si 0.914 3.086 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.275 1.275 25 C -0.058 4.058 26 C -0.064 4.064 27 O -0.205 6.205 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.346 0.654 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.267 0.733 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.795 -3.006 -14.504 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.013 4.013 3 N -0.186 5.186 4 C -0.118 4.118 5 C 0.018 3.982 6 N -0.290 5.290 7 C -0.043 4.043 8 H 0.094 0.906 9 C -0.241 4.241 10 C 0.007 3.993 11 N -0.351 5.351 12 C -0.059 4.059 13 C 0.336 3.664 14 O -0.381 6.381 15 C -0.296 4.296 16 S 0.168 5.832 17 C -0.679 4.679 18 H 0.087 0.913 19 C -0.135 4.135 20 N -0.505 5.505 21 Si 0.741 3.259 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.200 1.200 25 C -0.112 4.112 26 C -0.121 4.121 27 O -0.093 6.093 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.166 0.834 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.144 -3.713 -13.691 20.750 hybrid contribution -0.204 0.876 -0.810 1.210 sum 14.940 -2.836 -14.500 21.012 Atomic orbital electron populations 1.20278 0.81273 1.05895 1.04008 1.26252 0.96378 0.78338 1.00313 1.70370 1.01275 1.29901 1.17058 1.21216 0.93390 0.91294 1.05930 1.20068 0.90204 0.97132 0.90810 1.60317 1.36274 1.21034 1.11331 1.22026 0.88006 0.95163 0.99129 0.90574 1.22475 0.98842 1.00852 1.01912 1.21358 0.85290 0.95603 0.97089 1.47542 1.12838 1.15110 1.59621 1.21683 1.01831 0.83134 0.99293 1.19913 0.84000 0.86150 0.76294 1.90615 1.81863 1.17851 1.47740 1.23505 0.97423 1.03759 1.04949 1.85304 1.05166 1.20570 1.72157 1.22850 0.98829 1.02706 1.43533 0.91270 1.24940 0.98205 0.95524 0.94802 1.70016 1.27480 1.17216 1.35823 0.86296 0.80971 0.80257 0.78395 1.19991 1.20911 1.20038 1.23020 0.84089 0.95028 1.09076 1.20204 0.90132 0.98114 1.03631 1.84344 1.16362 1.38094 1.70508 0.89420 0.89471 0.87369 0.89894 0.94335 0.83414 0.91979 0.92053 0.92727 0.90109 0.90973 0.93268 0.91044 0.91987 0.90138 0.89680 0.92361 0.89897 0.90597 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.51 36.01 0.38 -0.35 16 2 C 0.19 3.22 8.34 -12.94 -0.11 3.11 16 3 N -0.46 -8.48 11.29 -7.35 -0.08 -8.56 16 4 C 0.00 0.04 6.62 -82.81 -0.55 -0.51 16 5 C 0.15 1.91 5.82 -4.97 -0.03 1.88 16 6 N -0.66 -9.15 4.51 -107.99 -0.49 -9.64 16 7 C 0.07 0.73 2.89 -67.71 -0.20 0.53 16 8 H 0.08 0.78 7.80 -51.93 -0.40 0.37 16 9 C -0.18 -1.44 9.16 37.16 0.34 -1.10 16 10 C 0.13 1.57 5.24 -4.04 -0.02 1.55 16 11 N -0.62 -9.21 2.78 -181.57 -0.50 -9.72 16 12 C 0.08 0.99 10.29 59.85 0.62 1.60 16 13 C 0.55 11.09 7.03 -10.98 -0.08 11.02 16 14 O -0.51 -11.86 14.59 5.56 0.08 -11.78 16 15 C -0.15 -3.23 4.71 36.01 0.17 -3.06 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.67 9.50 30.94 0.29 -15.37 16 18 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 19 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 20 N -0.87 -26.76 13.22 55.49 0.73 -26.03 16 21 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.06 -0.83 7.39 -35.69 -0.26 -1.10 16 26 C -0.06 -0.59 10.22 36.00 0.37 -0.22 16 27 O -0.20 -3.26 10.77 5.37 0.06 -3.20 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.08 1.13 8.05 -51.93 -0.42 0.72 16 32 H 0.04 0.39 6.45 -51.93 -0.33 0.05 16 33 H 0.35 5.06 8.47 -39.29 -0.33 4.73 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 36 H 0.05 0.40 7.45 -51.92 -0.39 0.01 16 37 H 0.08 1.12 7.42 -51.93 -0.39 0.73 16 38 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 41 H 0.06 0.54 7.89 -51.93 -0.41 0.13 16 42 H 0.08 1.66 7.40 -51.92 -0.38 1.28 16 43 H 0.08 1.86 8.11 -51.92 -0.42 1.44 16 44 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.61 7.16 -51.93 -0.37 0.24 16 LS Contribution 403.60 15.07 6.08 6.08 Total: -1.00 -37.93 403.60 -8.05 -45.97 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.52 Total: 3.81 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 0.83 Total: 0.05 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.34 Total: -53.95 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.14 Total: -14.98 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.93 -8.05 -45.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676304547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.155 kcal (2) G-P(sol) polarization free energy of solvation -37.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds