Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 110.30456 * 2 1 4 4 C 1.54387 * 110.34070 * 122.17824 * 2 1 3 5 5 N 1.48141 * 104.62167 * 95.00608 * 4 2 1 6 6 C 1.34778 * 127.84231 * 219.58762 * 5 4 2 7 7 O 1.21284 * 119.99453 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00172 * 180.02562 * 6 5 4 9 9 S 1.81006 * 109.46864 * 179.97438 * 8 6 5 10 10 C 1.76198 * 99.99635 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.38798 * 119.99870 * 180.02562 * 10 9 8 13 13 N 1.31639 * 119.99908 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00337 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47054 * 89.99837 * 14 12 10 16 16 H 1.48500 * 109.47164 * 210.00134 * 14 12 10 17 17 H 1.48504 * 109.46868 * 329.99954 * 14 12 10 18 18 C 1.48151 * 104.32400 * 39.58200 * 5 4 2 19 19 C 1.54393 * 104.71948 * 320.35947 * 18 5 4 20 20 H 1.08998 * 110.34288 * 265.05235 * 19 18 5 21 21 N 1.46896 * 110.34056 * 142.79460 * 19 18 5 22 22 C 1.46905 * 110.99768 * 86.45353 * 21 19 18 23 23 H 1.08986 * 110.43715 * 327.53685 * 22 21 19 24 24 C 1.54631 * 110.48361 * 204.99694 * 22 21 19 25 25 C 1.54484 * 101.76631 * 216.52741 * 24 22 21 26 26 N 1.46760 * 105.47254 * 25.41360 * 25 24 22 27 27 C 1.34420 * 111.30496 * 342.99080 * 26 25 24 28 28 O 1.21280 * 124.94603 * 180.44675 * 27 26 25 29 29 H 1.08994 * 109.47159 * 299.27545 * 1 2 3 30 30 H 1.08998 * 109.46817 * 59.27627 * 1 2 3 31 31 H 1.09002 * 109.47159 * 179.27746 * 1 2 3 32 32 H 1.09002 * 109.47086 * 180.71846 * 3 2 1 33 33 H 1.08997 * 109.47323 * 300.71991 * 3 2 1 34 34 H 1.09003 * 109.47336 * 60.72299 * 3 2 1 35 35 H 1.09001 * 110.40911 * 336.21493 * 4 2 1 36 36 H 1.09006 * 110.50275 * 213.84007 * 4 2 1 37 37 H 1.08998 * 109.46851 * 299.99684 * 8 6 5 38 38 H 1.08998 * 109.46891 * 60.00308 * 8 6 5 39 39 H 0.97003 * 119.99724 * 180.02562 * 13 12 10 40 40 H 1.09002 * 110.40666 * 79.20279 * 18 5 4 41 41 H 1.09002 * 110.40751 * 201.51721 * 18 5 4 42 42 H 1.00901 * 111.00216 * 322.50057 * 21 19 18 43 43 H 1.09005 * 110.97242 * 334.64339 * 24 22 21 44 44 H 1.08993 * 110.97025 * 98.37155 * 24 22 21 45 45 H 1.08994 * 110.24812 * 144.41623 * 25 24 22 46 46 H 1.08999 * 110.24275 * 266.41987 * 25 24 22 47 47 H 0.97003 * 124.35292 * 162.98917 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4349 0.0000 4 6 2.0667 -0.7709 1.2252 5 7 2.3140 -2.1431 0.7247 6 6 2.0774 -3.3093 1.3577 7 8 1.6053 -3.3079 2.4749 8 6 2.3995 -4.6148 0.6773 9 16 1.9726 -5.9888 1.7756 10 6 2.4392 -7.3498 0.7584 11 1 2.8502 -7.1733 -0.2246 12 6 2.2785 -8.6487 1.2204 13 7 1.7780 -8.8638 2.4188 14 14 2.7738 -10.0916 0.1424 15 1 4.1939 -10.4392 0.4024 16 1 1.9129 -11.2608 0.4540 17 1 2.6083 -9.7218 -1.2863 18 6 2.8802 -1.9428 -0.6295 19 6 2.0669 -0.7738 -1.2259 20 1 1.2406 -1.1546 -1.8262 21 7 2.9343 0.0897 -2.0381 22 6 3.0317 -0.4091 -3.4165 23 1 2.9679 -1.4969 -3.4329 24 6 4.3492 0.0658 -4.0719 25 6 3.9016 0.3238 -5.5278 26 7 2.4637 0.6070 -5.4510 27 6 1.9479 0.2008 -4.2780 28 8 0.7831 0.3070 -3.9573 29 1 -0.3633 0.5025 0.8964 30 1 -0.3633 0.5250 -0.8834 31 1 -0.3633 -1.0276 -0.0130 32 1 3.1508 1.4191 -0.0129 33 1 1.6947 1.9578 -0.8834 34 1 1.7157 1.9501 0.8964 35 1 1.3223 -0.7851 2.0213 36 1 2.9946 -0.3233 1.5815 37 1 1.8251 -4.6949 -0.2455 38 1 3.4642 -4.6515 0.4471 39 1 1.6661 -9.7716 2.7418 40 1 3.9355 -1.6776 -0.5648 41 1 2.7514 -2.8419 -1.2322 42 1 3.8484 0.1793 -1.6206 43 1 4.7083 0.9834 -3.6058 44 1 5.1093 -0.7142 -4.0294 45 1 4.4335 1.1815 -5.9395 46 1 4.0797 -0.5606 -6.1395 47 1 1.9512 1.0326 -6.1561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676986708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = -58.199176 kcal Electronic energy + Delta-G solvation = -28105.062613 eV Core-core repulsion = 24221.070514 eV Total energy + Delta-G solvation = -3883.992099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.91417 -39.97093 -37.97040 -36.68230 -34.78621 -33.58429 -32.43601 -30.64458 -29.54720 -28.30001 -27.44187 -26.15334 -25.85039 -25.29913 -22.99045 -22.42072 -20.40995 -19.40788 -19.03858 -17.74753 -17.62552 -17.10063 -16.65005 -16.10469 -15.65769 -15.20461 -14.82644 -14.78607 -14.64210 -14.29698 -14.05207 -13.94326 -13.86944 -13.73078 -13.32653 -13.13510 -12.96083 -12.68253 -12.62923 -12.30952 -12.12716 -11.94916 -11.78996 -11.69458 -11.55787 -11.07434 -11.04726 -11.02201 -10.77097 -10.75386 -10.63451 -10.20663 -9.82369 -9.49976 -9.42135 -9.07544 -8.87644 -8.49228 -8.23954 -6.50851 -6.22316 -3.93050 2.30331 2.87905 2.94791 3.06267 3.21190 3.24553 3.29212 3.56041 3.73879 3.89208 4.00255 4.19007 4.34606 4.39548 4.50497 4.62123 4.78856 4.87446 5.00233 5.02401 5.03440 5.07947 5.12717 5.23379 5.25821 5.34437 5.47231 5.54786 5.61724 5.66109 5.74673 5.77753 5.88226 5.93301 5.96768 6.08141 6.11084 6.25455 6.28377 6.37235 6.41760 6.61274 6.65030 6.92477 7.58251 7.72900 7.97432 8.34106 8.56881 9.22703 10.85127 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.002832 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.043168 B = 9883.114727 C =11514.668924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 C -0.115 4.115 4 C 0.111 3.889 5 N -0.625 5.625 6 C 0.554 3.446 7 O -0.514 6.514 8 C -0.147 4.147 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.074 3.926 19 C 0.082 3.918 20 H 0.100 0.900 21 N -0.652 5.652 22 C 0.048 3.952 23 H 0.088 0.912 24 C -0.138 4.138 25 C 0.105 3.895 26 N -0.737 5.737 27 C 0.530 3.470 28 O -0.516 6.516 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.269 0.731 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.350 0.650 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 23.275 -16.430 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 C -0.173 4.173 4 C -0.012 4.012 5 N -0.362 5.362 6 C 0.343 3.657 7 O -0.387 6.387 8 C -0.297 4.297 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.052 4.052 19 C -0.029 4.029 20 H 0.118 0.882 21 N -0.284 5.284 22 C -0.065 4.065 23 H 0.106 0.894 24 C -0.176 4.176 25 C -0.021 4.021 26 N -0.394 5.394 27 C 0.314 3.686 28 O -0.390 6.390 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.171 0.829 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.710 23.460 -14.424 28.125 hybrid contribution 1.404 -1.614 -2.352 3.179 sum 7.114 21.846 -16.776 28.448 Atomic orbital electron populations 1.21821 0.93348 1.02128 1.01969 1.21515 0.96426 0.95786 0.92976 1.21518 1.00306 0.93956 1.01515 1.22474 1.00721 0.81287 0.96744 1.48853 1.64930 1.05405 1.17028 1.19979 0.76943 0.83254 0.85548 1.90714 1.43001 1.86270 1.18761 1.23500 1.04463 0.97030 1.04709 1.85421 1.83393 0.93274 1.21128 1.22849 1.49108 0.92259 1.04145 0.91006 1.24994 0.94739 0.98365 0.95476 1.70024 1.41765 1.21738 1.16701 0.86167 0.78526 0.80719 0.80079 1.20262 1.20714 1.19715 1.23145 0.97257 1.00008 0.84812 1.22788 0.95673 0.90277 0.94177 0.88166 1.60456 1.17542 1.50567 0.99874 1.22237 0.94600 0.99262 0.90404 0.89448 1.22868 0.96463 1.03522 0.94742 1.21994 0.80967 1.01739 0.97352 1.46156 1.10840 1.63269 1.19153 1.20700 0.88724 0.77103 0.82042 1.90752 1.17897 1.55606 1.74748 0.92508 0.91884 0.92600 0.92864 0.91383 0.93430 0.89785 0.91454 0.89442 0.89472 0.92159 0.91348 0.90141 0.82873 0.88859 0.88832 0.90109 0.90916 0.75167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.24 37.16 0.31 -1.27 16 2 C -0.07 -0.69 1.03 -152.95 -0.16 -0.84 16 3 C -0.12 -0.99 7.45 37.16 0.28 -0.72 16 4 C 0.11 1.39 6.14 -2.41 -0.01 1.37 16 5 N -0.63 -9.25 3.32 -169.30 -0.56 -9.81 16 6 C 0.55 10.99 7.93 -10.98 -0.09 10.91 16 7 O -0.51 -12.24 16.13 5.55 0.09 -12.15 16 8 C -0.15 -3.06 5.13 36.01 0.18 -2.88 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 14 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.07 0.79 6.44 -2.40 -0.02 0.78 16 19 C 0.08 0.81 2.79 -66.15 -0.18 0.63 16 20 H 0.10 1.23 7.08 -51.93 -0.37 0.86 16 21 N -0.65 -4.80 4.48 -98.11 -0.44 -5.24 16 22 C 0.05 0.33 3.08 -67.72 -0.21 0.12 16 23 H 0.09 0.61 7.78 -51.94 -0.40 0.20 16 24 C -0.14 -0.45 6.60 -25.09 -0.17 -0.62 16 25 C 0.10 0.32 7.78 -3.12 -0.02 0.30 16 26 N -0.74 -4.49 6.24 -59.20 -0.37 -4.86 16 27 C 0.53 5.09 8.06 -10.86 -0.09 5.01 16 28 O -0.52 -7.34 17.56 5.56 0.10 -7.24 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.39 7.33 -51.93 -0.38 0.01 16 33 H 0.07 0.66 7.97 -51.93 -0.41 0.24 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 1.20 7.60 -51.93 -0.39 0.80 16 36 H 0.07 0.74 7.87 -51.93 -0.41 0.34 16 37 H 0.09 1.72 7.95 -51.92 -0.41 1.30 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.07 0.59 7.60 -51.93 -0.39 0.20 16 41 H 0.08 0.88 7.30 -51.93 -0.38 0.50 16 42 H 0.35 1.93 7.21 -39.29 -0.28 1.64 16 43 H 0.09 0.27 8.04 -51.93 -0.42 -0.15 16 44 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 47 H 0.41 2.06 8.96 -40.82 -0.37 1.69 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -37.41 392.00 -9.31 -46.71 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.55 Total: -0.06 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 0.02 Total: -0.26 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.64 Total: -45.48 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.19 Total: -19.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.41 -9.31 -46.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676986708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.486 kcal (2) G-P(sol) polarization free energy of solvation -37.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds