Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 110.30456 * 2 1 4 4 C 1.54387 * 110.34070 * 122.17824 * 2 1 3 5 5 N 1.48141 * 104.62167 * 95.00608 * 4 2 1 6 6 C 1.34778 * 127.84231 * 219.58762 * 5 4 2 7 7 O 1.21284 * 119.99453 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00172 * 180.02562 * 6 5 4 9 9 S 1.81006 * 109.46864 * 179.97438 * 8 6 5 10 10 C 1.76198 * 99.99635 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.38798 * 119.99870 * 180.02562 * 10 9 8 13 13 N 1.31639 * 119.99908 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00337 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47054 * 89.99837 * 14 12 10 16 16 H 1.48500 * 109.47164 * 210.00134 * 14 12 10 17 17 H 1.48504 * 109.46868 * 329.99954 * 14 12 10 18 18 C 1.48151 * 104.32400 * 39.58200 * 5 4 2 19 19 C 1.54393 * 104.71948 * 320.35947 * 18 5 4 20 20 H 1.08998 * 110.34288 * 265.05235 * 19 18 5 21 21 N 1.46896 * 110.34056 * 142.79460 * 19 18 5 22 22 C 1.46905 * 110.99768 * 86.45353 * 21 19 18 23 23 H 1.08986 * 110.43715 * 327.53685 * 22 21 19 24 24 C 1.54631 * 110.48361 * 204.99694 * 22 21 19 25 25 C 1.54484 * 101.76631 * 216.52741 * 24 22 21 26 26 N 1.46760 * 105.47254 * 25.41360 * 25 24 22 27 27 C 1.34420 * 111.30496 * 342.99080 * 26 25 24 28 28 O 1.21280 * 124.94603 * 180.44675 * 27 26 25 29 29 H 1.08994 * 109.47159 * 299.27545 * 1 2 3 30 30 H 1.08998 * 109.46817 * 59.27627 * 1 2 3 31 31 H 1.09002 * 109.47159 * 179.27746 * 1 2 3 32 32 H 1.09002 * 109.47086 * 180.71846 * 3 2 1 33 33 H 1.08997 * 109.47323 * 300.71991 * 3 2 1 34 34 H 1.09003 * 109.47336 * 60.72299 * 3 2 1 35 35 H 1.09001 * 110.40911 * 336.21493 * 4 2 1 36 36 H 1.09006 * 110.50275 * 213.84007 * 4 2 1 37 37 H 1.08998 * 109.46851 * 299.99684 * 8 6 5 38 38 H 1.08998 * 109.46891 * 60.00308 * 8 6 5 39 39 H 0.97003 * 119.99724 * 180.02562 * 13 12 10 40 40 H 1.09002 * 110.40666 * 79.20279 * 18 5 4 41 41 H 1.09002 * 110.40751 * 201.51721 * 18 5 4 42 42 H 1.00901 * 111.00216 * 322.50057 * 21 19 18 43 43 H 1.09005 * 110.97242 * 334.64339 * 24 22 21 44 44 H 1.08993 * 110.97025 * 98.37155 * 24 22 21 45 45 H 1.08994 * 110.24812 * 144.41623 * 25 24 22 46 46 H 1.08999 * 110.24275 * 266.41987 * 25 24 22 47 47 H 0.97003 * 124.35292 * 162.98917 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4349 0.0000 4 6 2.0667 -0.7709 1.2252 5 7 2.3140 -2.1431 0.7247 6 6 2.0774 -3.3093 1.3577 7 8 1.6053 -3.3079 2.4749 8 6 2.3995 -4.6148 0.6773 9 16 1.9726 -5.9888 1.7756 10 6 2.4392 -7.3498 0.7584 11 1 2.8502 -7.1733 -0.2246 12 6 2.2785 -8.6487 1.2204 13 7 1.7780 -8.8638 2.4188 14 14 2.7738 -10.0916 0.1424 15 1 4.1939 -10.4392 0.4024 16 1 1.9129 -11.2608 0.4540 17 1 2.6083 -9.7218 -1.2863 18 6 2.8802 -1.9428 -0.6295 19 6 2.0669 -0.7738 -1.2259 20 1 1.2406 -1.1546 -1.8262 21 7 2.9343 0.0897 -2.0381 22 6 3.0317 -0.4091 -3.4165 23 1 2.9679 -1.4969 -3.4329 24 6 4.3492 0.0658 -4.0719 25 6 3.9016 0.3238 -5.5278 26 7 2.4637 0.6070 -5.4510 27 6 1.9479 0.2008 -4.2780 28 8 0.7831 0.3070 -3.9573 29 1 -0.3633 0.5025 0.8964 30 1 -0.3633 0.5250 -0.8834 31 1 -0.3633 -1.0276 -0.0130 32 1 3.1508 1.4191 -0.0129 33 1 1.6947 1.9578 -0.8834 34 1 1.7157 1.9501 0.8964 35 1 1.3223 -0.7851 2.0213 36 1 2.9946 -0.3233 1.5815 37 1 1.8251 -4.6949 -0.2455 38 1 3.4642 -4.6515 0.4471 39 1 1.6661 -9.7716 2.7418 40 1 3.9355 -1.6776 -0.5648 41 1 2.7514 -2.8419 -1.2322 42 1 3.8484 0.1793 -1.6206 43 1 4.7083 0.9834 -3.6058 44 1 5.1093 -0.7142 -4.0294 45 1 4.4335 1.1815 -5.9395 46 1 4.0797 -0.5606 -6.1395 47 1 1.9512 1.0326 -6.1561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676986708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = -87.398756 kcal Electronic energy + Delta-G solvation = -28106.328802 eV Core-core repulsion = 24221.070514 eV Total energy + Delta-G solvation = -3885.258288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68279 -40.93630 -39.30141 -37.36294 -35.58427 -34.66338 -34.59777 -31.21052 -31.12721 -29.00391 -28.26812 -27.77120 -26.83465 -26.72893 -23.85029 -22.83329 -21.06586 -20.79083 -20.03934 -19.46770 -18.35686 -18.06946 -17.61057 -17.12866 -16.90664 -16.72253 -16.35785 -15.94700 -15.63206 -15.38063 -15.15971 -14.81665 -14.67644 -14.57922 -14.47787 -14.17137 -14.09975 -13.75078 -13.44102 -13.39513 -13.20007 -13.13995 -12.90903 -12.86649 -12.64990 -12.54210 -12.44895 -12.12195 -11.93616 -11.73140 -11.60850 -11.45042 -11.15832 -11.02238 -10.93979 -10.31203 -9.99898 -9.87325 -9.39038 -8.70655 -8.36334 -6.15637 1.20493 1.41773 1.42678 1.52250 1.54608 1.63304 2.02169 2.25352 2.46892 2.97802 3.09400 3.20665 3.41937 3.46971 3.54179 3.65535 3.85892 3.89823 4.10968 4.16558 4.19317 4.22847 4.27233 4.35975 4.40817 4.48508 4.61135 4.68788 4.75856 4.80022 4.83527 4.87932 4.95943 5.05468 5.09779 5.13668 5.21852 5.32353 5.37720 5.39313 5.60509 5.86199 5.95869 6.09980 6.17717 6.36713 6.46786 7.04429 7.07448 7.35768 8.73079 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.002832 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.043168 B = 9883.114727 C =11514.668924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.105 4.105 4 C 0.109 3.891 5 N -0.618 5.618 6 C 0.551 3.449 7 O -0.566 6.566 8 C -0.119 4.119 9 S -0.150 6.150 10 C -0.546 4.546 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 1.001 2.999 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.258 1.258 18 C 0.071 3.929 19 C 0.095 3.905 20 H 0.073 0.927 21 N -0.646 5.646 22 C 0.047 3.953 23 H 0.087 0.913 24 C -0.126 4.126 25 C 0.099 3.901 26 N -0.729 5.729 27 C 0.515 3.485 28 O -0.577 6.577 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.272 0.728 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.366 0.634 43 H 0.103 0.897 44 H 0.117 0.883 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.847 24.365 -19.214 32.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.061 4.061 3 C -0.163 4.163 4 C -0.013 4.013 5 N -0.353 5.353 6 C 0.340 3.660 7 O -0.445 6.445 8 C -0.270 4.270 9 S 0.077 5.923 10 C -0.694 4.694 11 H 0.101 0.899 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.182 1.182 18 C -0.054 4.054 19 C -0.017 4.017 20 H 0.091 0.909 21 N -0.281 5.281 22 C -0.066 4.066 23 H 0.105 0.895 24 C -0.164 4.164 25 C -0.024 4.024 26 N -0.385 5.385 27 C 0.300 3.700 28 O -0.456 6.456 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.190 0.810 43 H 0.122 0.878 44 H 0.135 0.865 45 H 0.122 0.878 46 H 0.104 0.896 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.083 24.617 -17.286 31.422 hybrid contribution 0.376 -1.777 -1.598 2.419 sum 9.460 22.841 -18.885 31.110 Atomic orbital electron populations 1.21787 0.94816 1.00416 1.01977 1.21480 0.95243 0.97054 0.92341 1.21444 1.01548 0.91956 1.01357 1.22684 1.01497 0.80102 0.96998 1.48757 1.63234 1.04872 1.18396 1.19729 0.76993 0.84240 0.85056 1.90691 1.45725 1.87071 1.20974 1.23284 1.05770 0.94807 1.03117 1.85623 1.84389 0.97223 1.25060 1.23180 1.49173 0.92594 1.04426 0.89891 1.26164 0.94338 1.01729 0.96948 1.70194 1.43095 1.22597 1.18922 0.84927 0.78434 0.76137 0.78315 1.19028 1.20347 1.18155 1.23493 0.99045 1.00501 0.82334 1.22485 0.95352 0.90143 0.93691 0.90852 1.60332 1.18140 1.49604 0.99997 1.22290 0.95618 0.99068 0.89640 0.89506 1.22925 0.94779 1.04649 0.94001 1.22294 0.78926 1.03406 0.97796 1.46278 1.12375 1.61694 1.18128 1.21325 0.88521 0.76884 0.83260 1.90717 1.20380 1.58261 1.76214 0.91924 0.92401 0.95146 0.90650 0.92178 0.92975 0.92067 0.88774 0.88124 0.87275 0.91943 0.87720 0.90094 0.81042 0.87818 0.86457 0.87774 0.89583 0.74843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.24 71.98 0.59 -2.62 16 2 C -0.06 -1.19 1.03 -51.17 -0.05 -1.24 16 3 C -0.11 -1.57 7.45 71.98 0.54 -1.03 16 4 C 0.11 2.62 6.14 86.53 0.53 3.15 16 5 N -0.62 -17.70 3.32 -807.93 -2.68 -20.38 16 6 C 0.55 22.11 7.93 87.66 0.70 22.80 16 7 O -0.57 -28.08 16.13 -3.04 -0.05 -28.13 16 8 C -0.12 -4.95 5.13 71.24 0.37 -4.58 16 9 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 10 C -0.55 -31.48 9.50 67.95 0.65 -30.84 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 12 C 0.01 0.74 5.49 84.86 0.47 1.21 16 13 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 14 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 15 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 C 0.07 1.34 6.44 86.54 0.56 1.90 16 19 C 0.09 1.75 2.79 45.93 0.13 1.87 16 20 H 0.07 1.82 7.08 -2.39 -0.02 1.80 16 21 N -0.65 -7.73 4.48 -464.33 -2.08 -9.81 16 22 C 0.05 0.52 3.08 44.91 0.14 0.66 16 23 H 0.09 1.00 7.78 -2.39 -0.02 0.98 16 24 C -0.13 -0.27 6.60 31.65 0.21 -0.06 16 25 C 0.10 0.24 7.78 86.83 0.68 0.92 16 26 N -0.73 -7.55 6.24 -459.81 -2.87 -10.42 16 27 C 0.51 9.43 8.06 87.90 0.71 10.14 16 28 O -0.58 -16.90 17.56 -3.03 -0.05 -16.95 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.80 7.33 -2.39 -0.02 0.78 16 33 H 0.06 1.04 7.97 -2.39 -0.02 1.02 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 1.77 7.60 -2.39 -0.02 1.75 16 36 H 0.09 1.81 7.87 -2.38 -0.02 1.79 16 37 H 0.10 3.90 7.95 -2.40 -0.02 3.88 16 38 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 39 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 40 H 0.10 1.32 7.60 -2.39 -0.02 1.30 16 41 H 0.08 1.57 7.30 -2.39 -0.02 1.56 16 42 H 0.37 2.36 7.21 -89.69 -0.65 1.71 16 43 H 0.10 0.08 8.04 -2.38 -0.02 0.06 16 44 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.41 3.64 8.96 -92.71 -0.83 2.80 16 Total: -1.00 -87.45 392.00 -0.87 -88.32 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.49 Total: 15.46 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.20 Total: 2.26 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -7.34 Total: -96.87 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.10 Total: -45.08 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -87.45 -0.87 -88.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676986708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.922 kcal (2) G-P(sol) polarization free energy of solvation -87.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds