Wall clock time and date at job start Sat Apr 11 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30258 * 125.61806 * 2 1 4 4 C 1.34485 * 108.70349 * 179.97438 * 3 2 1 5 5 C 1.50690 * 126.16685 * 179.73948 * 4 3 2 6 6 C 1.34334 * 107.66149 * 0.02562 * 4 3 2 7 7 C 1.50703 * 126.43831 * 179.97438 * 6 4 3 8 8 N 1.46908 * 109.47099 * 89.99696 * 7 6 4 9 9 C 1.46898 * 110.99912 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.47107 * 35.00409 * 9 8 7 11 11 C 1.52997 * 109.47289 * 275.00189 * 9 8 7 12 12 C 1.53000 * 109.46958 * 155.00197 * 9 8 7 13 13 C 1.53000 * 109.47274 * 295.00275 * 12 9 8 14 14 N 1.46500 * 109.47147 * 180.02562 * 13 12 9 15 15 C 1.34775 * 119.99896 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99958 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00041 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47055 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99685 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00125 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99895 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47081 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47280 * 119.99773 * 23 21 19 26 26 H 1.48503 * 109.46963 * 239.99580 * 23 21 19 27 27 O 1.33971 * 125.62211 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47087 * 90.02368 * 1 2 3 29 29 H 1.09004 * 109.47057 * 210.02501 * 1 2 3 30 30 H 1.09001 * 109.47192 * 330.02360 * 1 2 3 31 31 H 1.08997 * 109.47722 * 90.02277 * 5 4 3 32 32 H 1.09002 * 109.47017 * 210.02303 * 5 4 3 33 33 H 1.09000 * 109.47384 * 330.02178 * 5 4 3 34 34 H 1.09000 * 109.47084 * 209.99993 * 7 6 4 35 35 H 1.09000 * 109.47303 * 330.00286 * 7 6 4 36 36 H 1.00901 * 110.99603 * 56.04997 * 8 7 6 37 37 H 1.08999 * 109.46914 * 60.00401 * 11 9 8 38 38 H 1.09004 * 109.46959 * 180.02562 * 11 9 8 39 39 H 1.08999 * 109.47412 * 300.00453 * 11 9 8 40 40 H 1.09001 * 109.47229 * 55.00305 * 12 9 8 41 41 H 1.09004 * 109.47270 * 175.00135 * 12 9 8 42 42 H 1.09007 * 109.46939 * 299.99703 * 13 12 9 43 43 H 1.08995 * 109.47283 * 59.99699 * 13 12 9 44 44 H 0.96998 * 119.99700 * 359.97438 * 14 13 12 45 45 H 1.08999 * 109.46563 * 300.00002 * 17 15 14 46 46 H 1.08994 * 109.46711 * 60.00165 * 17 15 14 47 47 H 0.96992 * 120.00119 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7569 1.5728 -0.0048 6 6 3.5697 -0.6756 0.0004 7 6 4.7937 -1.5548 0.0003 8 7 5.1914 -1.8407 1.3853 9 6 6.3836 -2.6979 1.4244 10 1 7.0409 -2.4444 0.5925 11 6 5.9615 -4.1642 1.3123 12 6 7.1252 -2.4802 2.7449 13 6 7.6556 -1.0462 2.8015 14 7 8.3661 -0.8380 4.0657 15 6 8.9224 0.3593 4.3367 16 8 8.8344 1.2644 3.5343 17 6 9.6529 0.5737 5.6373 18 16 10.2804 2.2701 5.7042 19 6 11.0665 2.2435 7.2809 20 1 11.0514 1.3429 7.8767 21 6 11.7044 3.3803 7.7577 22 7 11.7224 4.4782 7.0318 23 14 12.5371 3.3523 9.4296 24 1 12.3747 2.0088 10.0410 25 1 13.9827 3.6516 9.2677 26 1 11.9156 4.3746 10.3093 27 8 2.2872 -1.0890 0.0005 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 5.0487 1.7955 1.0215 32 1 5.5814 1.0773 -0.5175 33 1 4.5123 2.5003 -0.5223 34 1 4.5695 -2.4896 -0.5137 35 1 5.6080 -1.0439 -0.5134 36 1 4.4305 -2.2563 1.9015 37 1 5.4332 -4.3193 0.3716 38 1 6.8462 -4.8003 1.3418 39 1 5.3042 -4.4177 2.1441 40 1 6.4418 -2.6480 3.5773 41 1 7.9590 -3.1790 2.8128 42 1 8.3390 -0.8785 1.9691 43 1 6.8218 -0.3475 2.7336 44 1 8.4362 -1.5618 4.7075 45 1 8.9693 0.4065 6.4697 46 1 10.4863 -0.1253 5.7054 47 1 12.1684 5.2726 7.3648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690833664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:31 Heat of formation + Delta-G solvation = -31.121018 kcal Electronic energy + Delta-G solvation = -26356.183011 eV Core-core repulsion = 22473.365109 eV Total energy + Delta-G solvation = -3882.817902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.58368 -39.16341 -38.07054 -35.39854 -34.89279 -33.54631 -32.39666 -31.72692 -30.05483 -29.47040 -28.05161 -27.52200 -25.45980 -24.26735 -23.09288 -21.99337 -21.28129 -20.78682 -20.10277 -17.80371 -17.21216 -16.93571 -16.23342 -16.10023 -15.93329 -15.65673 -15.06862 -14.94888 -14.77713 -14.31185 -13.93579 -13.76483 -13.75043 -13.53748 -13.30007 -13.28766 -13.14404 -12.96524 -12.91537 -12.59549 -12.48278 -12.27986 -12.11692 -11.91877 -11.57952 -11.34916 -11.13664 -11.06600 -11.04402 -10.98415 -10.73172 -10.70840 -9.76913 -9.31222 -9.04695 -9.00052 -8.76234 -8.67606 -8.18295 -6.45594 -6.18597 -3.88485 1.12934 2.33110 2.42647 3.10858 3.20812 3.23726 3.30793 3.36347 3.67332 3.78906 3.81423 4.23509 4.34712 4.46939 4.54926 4.63489 4.70525 4.82609 4.93181 4.94592 5.02099 5.07631 5.10948 5.16466 5.20138 5.30973 5.31924 5.39464 5.50230 5.55882 5.60221 5.63815 5.66652 5.71592 5.78359 5.91145 5.92373 6.00769 6.18807 6.19588 6.22279 6.48761 6.75668 6.86528 7.52254 7.62986 7.82366 8.38635 8.72698 9.26760 10.88892 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014754 B = 0.001909 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.303967 B =14663.578709 C =15929.632339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.189 3.811 3 N -0.482 5.482 4 C 0.019 3.981 5 C -0.073 4.073 6 C -0.061 4.061 7 C 0.151 3.849 8 N -0.677 5.677 9 C 0.088 3.912 10 H 0.085 0.915 11 C -0.183 4.183 12 C -0.118 4.118 13 C 0.127 3.873 14 N -0.741 5.741 15 C 0.530 3.470 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 O -0.205 6.205 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.107 0.893 36 H 0.346 0.654 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.395 0.605 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.276 -19.208 -15.530 31.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.018 4.018 3 N -0.213 5.213 4 C -0.101 4.101 5 C -0.130 4.130 6 C -0.114 4.114 7 C 0.023 3.977 8 N -0.309 5.309 9 C -0.023 4.023 10 H 0.104 0.896 11 C -0.242 4.242 12 C -0.156 4.156 13 C 0.003 3.997 14 N -0.395 5.395 15 C 0.316 3.684 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 O -0.093 6.093 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.125 0.875 36 H 0.164 0.836 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.229 0.771 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.251 -16.349 -16.837 30.355 hybrid contribution 0.457 -3.001 2.091 3.686 sum -18.794 -19.350 -14.746 30.742 Atomic orbital electron populations 1.20246 0.81362 1.05145 1.04573 1.26223 0.96349 0.78734 1.00452 1.70406 1.01868 1.30263 1.18737 1.21597 0.93235 0.92178 1.03108 1.20164 0.91335 0.97598 1.03879 1.22899 0.83111 0.95002 1.10375 1.20251 0.90017 0.96265 0.91200 1.60626 1.08378 1.49925 1.11924 1.21525 0.91865 0.90151 0.98709 0.89639 1.22503 1.02353 0.97436 1.01909 1.21777 0.99672 0.96818 0.97373 1.21208 0.96394 0.96136 0.85949 1.46035 1.58113 1.14254 1.21137 1.20259 0.78230 0.81718 0.88170 1.90696 1.58116 1.41594 1.48792 1.23533 1.02351 1.07717 0.96820 1.85397 1.69049 1.03645 1.25333 1.22918 1.40373 1.01039 1.03943 0.90915 1.24998 0.95805 0.94587 0.98275 1.70030 1.41381 1.01783 1.37084 0.86120 0.78941 0.78226 0.82215 1.19646 1.20588 1.20588 1.84336 1.16692 1.37799 1.70464 0.89023 0.89449 0.88035 0.89736 0.90672 0.90810 0.93403 0.87546 0.83576 0.92643 0.91499 0.92184 0.91150 0.90962 0.92313 0.90315 0.77148 0.89356 0.89371 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.00 0.38 0.09 16 2 C 0.19 1.91 8.34 -12.95 -0.11 1.80 16 3 N -0.48 -6.09 11.29 -7.36 -0.08 -6.17 16 4 C 0.02 0.23 7.11 -82.81 -0.59 -0.36 16 5 C -0.07 -0.77 10.22 36.00 0.37 -0.40 16 6 C -0.06 -0.63 6.90 -35.68 -0.25 -0.87 16 7 C 0.15 1.12 5.82 -4.97 -0.03 1.10 16 8 N -0.68 -5.08 5.69 -107.98 -0.61 -5.70 16 9 C 0.09 0.55 2.59 -67.72 -0.18 0.38 16 10 H 0.09 0.53 7.80 -51.93 -0.41 0.13 16 11 C -0.18 -0.91 9.16 37.16 0.34 -0.57 16 12 C -0.12 -0.88 5.00 -26.73 -0.13 -1.01 16 13 C 0.13 1.47 5.56 -4.04 -0.02 1.45 16 14 N -0.74 -10.03 5.56 -60.29 -0.33 -10.36 16 15 C 0.53 10.13 7.85 -10.98 -0.09 10.04 16 16 O -0.52 -12.02 15.86 5.56 0.09 -11.93 16 17 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 23 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 O -0.21 -2.14 10.78 5.37 0.06 -2.09 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.66 7.16 -51.93 -0.37 0.29 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.30 7.44 -51.93 -0.39 -0.09 16 35 H 0.11 0.72 7.07 -51.93 -0.37 0.35 16 36 H 0.35 2.56 8.46 -39.29 -0.33 2.22 16 37 H 0.05 0.27 7.45 -51.93 -0.39 -0.12 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.07 7.75 -51.93 -0.40 0.67 16 44 H 0.40 4.14 8.47 -40.82 -0.35 3.79 16 45 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 409.47 15.07 6.17 6.17 Total: -1.00 -37.23 409.47 -8.72 -45.94 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.61 Total: 1.55 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 0.12 Total: -4.42 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.30 Total: -47.92 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.15 Total: -14.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.23 -8.72 -45.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690833664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.820 kcal (2) G-P(sol) polarization free energy of solvation -37.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds