Wall clock time and date at job start Sat Apr 11 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30258 * 125.61806 * 2 1 4 4 C 1.34485 * 108.70349 * 179.97438 * 3 2 1 5 5 C 1.50690 * 126.16685 * 179.73948 * 4 3 2 6 6 C 1.34334 * 107.66149 * 0.02562 * 4 3 2 7 7 C 1.50703 * 126.43831 * 179.97438 * 6 4 3 8 8 N 1.46908 * 109.47099 * 89.99696 * 7 6 4 9 9 C 1.46898 * 110.99912 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.47107 * 35.00409 * 9 8 7 11 11 C 1.52997 * 109.47289 * 275.00189 * 9 8 7 12 12 C 1.53000 * 109.46958 * 155.00197 * 9 8 7 13 13 C 1.53000 * 109.47274 * 295.00275 * 12 9 8 14 14 N 1.46500 * 109.47147 * 180.02562 * 13 12 9 15 15 C 1.34775 * 119.99896 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99958 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00041 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47055 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99685 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00125 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99895 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47081 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47280 * 119.99773 * 23 21 19 26 26 H 1.48503 * 109.46963 * 239.99580 * 23 21 19 27 27 O 1.33971 * 125.62211 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47087 * 90.02368 * 1 2 3 29 29 H 1.09004 * 109.47057 * 210.02501 * 1 2 3 30 30 H 1.09001 * 109.47192 * 330.02360 * 1 2 3 31 31 H 1.08997 * 109.47722 * 90.02277 * 5 4 3 32 32 H 1.09002 * 109.47017 * 210.02303 * 5 4 3 33 33 H 1.09000 * 109.47384 * 330.02178 * 5 4 3 34 34 H 1.09000 * 109.47084 * 209.99993 * 7 6 4 35 35 H 1.09000 * 109.47303 * 330.00286 * 7 6 4 36 36 H 1.00901 * 110.99603 * 56.04997 * 8 7 6 37 37 H 1.08999 * 109.46914 * 60.00401 * 11 9 8 38 38 H 1.09004 * 109.46959 * 180.02562 * 11 9 8 39 39 H 1.08999 * 109.47412 * 300.00453 * 11 9 8 40 40 H 1.09001 * 109.47229 * 55.00305 * 12 9 8 41 41 H 1.09004 * 109.47270 * 175.00135 * 12 9 8 42 42 H 1.09007 * 109.46939 * 299.99703 * 13 12 9 43 43 H 1.08995 * 109.47283 * 59.99699 * 13 12 9 44 44 H 0.96998 * 119.99700 * 359.97438 * 14 13 12 45 45 H 1.08999 * 109.46563 * 300.00002 * 17 15 14 46 46 H 1.08994 * 109.46711 * 60.00165 * 17 15 14 47 47 H 0.96992 * 120.00119 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7569 1.5728 -0.0048 6 6 3.5697 -0.6756 0.0004 7 6 4.7937 -1.5548 0.0003 8 7 5.1914 -1.8407 1.3853 9 6 6.3836 -2.6979 1.4244 10 1 7.0409 -2.4444 0.5925 11 6 5.9615 -4.1642 1.3123 12 6 7.1252 -2.4802 2.7449 13 6 7.6556 -1.0462 2.8015 14 7 8.3661 -0.8380 4.0657 15 6 8.9224 0.3593 4.3367 16 8 8.8344 1.2644 3.5343 17 6 9.6529 0.5737 5.6373 18 16 10.2804 2.2701 5.7042 19 6 11.0665 2.2435 7.2809 20 1 11.0514 1.3429 7.8767 21 6 11.7044 3.3803 7.7577 22 7 11.7224 4.4782 7.0318 23 14 12.5371 3.3523 9.4296 24 1 12.3747 2.0088 10.0410 25 1 13.9827 3.6516 9.2677 26 1 11.9156 4.3746 10.3093 27 8 2.2872 -1.0890 0.0005 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 5.0487 1.7955 1.0215 32 1 5.5814 1.0773 -0.5175 33 1 4.5123 2.5003 -0.5223 34 1 4.5695 -2.4896 -0.5137 35 1 5.6080 -1.0439 -0.5134 36 1 4.4305 -2.2563 1.9015 37 1 5.4332 -4.3193 0.3716 38 1 6.8462 -4.8003 1.3418 39 1 5.3042 -4.4177 2.1441 40 1 6.4418 -2.6480 3.5773 41 1 7.9590 -3.1790 2.8128 42 1 8.3390 -0.8785 1.9691 43 1 6.8218 -0.3475 2.7336 44 1 8.4362 -1.5618 4.7075 45 1 8.9693 0.4065 6.4697 46 1 10.4863 -0.1253 5.7054 47 1 12.1684 5.2726 7.3648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690833664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:31 Heat of formation + Delta-G solvation = -60.760021 kcal Electronic energy + Delta-G solvation = -26357.468255 eV Core-core repulsion = 22473.365109 eV Total energy + Delta-G solvation = -3884.103145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.36287 -40.55658 -38.77106 -36.22569 -35.98959 -34.57878 -34.35569 -32.51505 -31.22283 -30.20980 -29.10665 -28.16583 -27.64325 -24.96036 -23.94155 -22.78165 -22.05731 -21.61611 -21.30367 -19.80781 -17.96824 -17.85355 -17.53218 -17.16134 -16.89144 -16.87355 -16.50148 -16.20365 -15.82984 -15.57951 -15.04806 -14.74483 -14.63412 -14.42053 -14.27909 -14.26368 -13.93302 -13.81487 -13.69962 -13.47569 -13.47091 -13.15028 -13.11530 -12.91928 -12.90914 -12.69143 -12.61621 -12.24566 -12.16530 -11.91382 -11.75190 -11.69172 -11.53942 -11.15197 -10.89270 -10.25494 -10.02386 -9.64773 -9.35580 -8.65530 -8.33949 -6.11878 0.37331 1.28734 1.41903 1.48649 1.58955 1.59781 1.65709 1.67802 2.27530 2.37991 3.00027 3.05332 3.22212 3.34256 3.69668 3.84800 3.87226 3.96955 4.05613 4.20952 4.23414 4.30671 4.34576 4.49940 4.52155 4.52811 4.55617 4.61212 4.66610 4.74970 4.76438 4.79348 4.89258 4.92381 4.98588 5.05589 5.16827 5.18113 5.26704 5.31260 5.41275 5.42809 5.55958 5.95331 6.20876 6.32445 6.59284 6.73400 7.07243 7.32567 8.75573 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014754 B = 0.001909 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.303967 B =14663.578709 C =15929.632339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.189 3.811 3 N -0.522 5.522 4 C -0.013 4.013 5 C -0.067 4.067 6 C -0.057 4.057 7 C 0.156 3.844 8 N -0.689 5.689 9 C 0.091 3.909 10 H 0.088 0.912 11 C -0.175 4.175 12 C -0.106 4.106 13 C 0.128 3.872 14 N -0.714 5.714 15 C 0.530 3.470 16 O -0.567 6.567 17 C -0.129 4.129 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.274 1.274 27 O -0.209 6.209 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.346 0.654 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.415 0.585 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.709 -22.526 -14.652 33.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.018 4.018 3 N -0.253 5.253 4 C -0.133 4.133 5 C -0.124 4.124 6 C -0.110 4.110 7 C 0.027 3.973 8 N -0.321 5.321 9 C -0.019 4.019 10 H 0.106 0.894 11 C -0.234 4.234 12 C -0.144 4.144 13 C 0.005 3.995 14 N -0.368 5.368 15 C 0.315 3.685 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.200 1.200 27 O -0.097 6.097 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.165 0.835 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.252 0.748 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.700 -19.735 -15.955 32.127 hybrid contribution 0.487 -2.053 1.746 2.738 sum -19.213 -21.787 -14.209 32.338 Atomic orbital electron populations 1.20522 0.78159 1.06366 1.06170 1.27197 0.97902 0.78109 0.98624 1.70382 1.02613 1.31800 1.20549 1.21819 0.93358 0.93239 1.04848 1.20098 0.91829 0.97710 1.02777 1.23320 0.83792 0.94852 1.09010 1.20318 0.88968 0.96539 0.91458 1.60590 1.08854 1.50679 1.11987 1.21509 0.91261 0.91037 0.98064 0.89375 1.22415 1.02743 0.96045 1.02212 1.21733 1.00422 0.93893 0.98400 1.21318 0.95202 0.98597 0.84423 1.45812 1.56068 1.12781 1.22104 1.20065 0.78409 0.82785 0.87196 1.90686 1.60248 1.43606 1.50039 1.23379 1.03394 1.02722 0.98563 1.85597 1.70161 1.10604 1.26325 1.23244 1.40453 1.01699 1.03908 0.89888 1.26156 0.96361 0.93961 1.02851 1.70195 1.42485 1.02695 1.39437 0.84887 0.77608 0.78950 0.76371 1.17973 1.19871 1.19992 1.84355 1.16837 1.37975 1.70525 0.87087 0.87318 0.87622 0.91627 0.89119 0.91175 0.91687 0.87072 0.83495 0.92284 0.90680 0.91974 0.90483 0.89003 0.93125 0.92449 0.74847 0.87447 0.87182 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 71.23 0.75 0.26 16 2 C 0.19 3.74 8.34 88.34 0.74 4.48 16 3 N -0.52 -13.59 11.29 -291.98 -3.30 -16.89 16 4 C -0.01 -0.32 7.11 41.26 0.29 -0.03 16 5 C -0.07 -1.52 10.22 71.23 0.73 -0.80 16 6 C -0.06 -1.15 6.90 24.79 0.17 -0.98 16 7 C 0.16 2.13 5.82 85.56 0.50 2.63 16 8 N -0.69 -9.41 5.69 -495.55 -2.82 -12.23 16 9 C 0.09 0.93 2.59 44.91 0.12 1.05 16 10 H 0.09 0.89 7.80 -2.38 -0.02 0.87 16 11 C -0.18 -1.20 9.16 71.98 0.66 -0.54 16 12 C -0.11 -1.29 5.00 30.59 0.15 -1.14 16 13 C 0.13 2.82 5.56 86.38 0.48 3.30 16 14 N -0.71 -18.07 5.56 -463.06 -2.57 -20.64 16 15 C 0.53 20.05 7.85 87.66 0.69 20.73 16 16 O -0.57 -27.09 15.86 -3.02 -0.05 -27.14 16 17 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 18 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 19 C -0.55 -31.53 9.50 67.95 0.65 -30.89 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 21 C 0.01 0.65 5.49 84.86 0.47 1.12 16 22 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 23 Si 1.00 44.04 29.55 68.60 2.03 46.06 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 O -0.21 -4.22 10.78 -3.70 -0.04 -4.26 16 28 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.09 1.67 7.16 -2.39 -0.02 1.66 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 0.68 7.44 -2.39 -0.02 0.66 16 35 H 0.11 1.40 7.07 -2.39 -0.02 1.38 16 36 H 0.35 4.59 8.46 -89.69 -0.76 3.83 16 37 H 0.06 0.39 7.45 -2.39 -0.02 0.37 16 38 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.06 0.42 8.13 -2.39 -0.02 0.40 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.06 1.56 7.75 -2.39 -0.02 1.54 16 44 H 0.41 7.38 8.47 -92.71 -0.79 6.59 16 45 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 46 H 0.11 3.95 8.14 -2.40 -0.02 3.94 16 47 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -84.59 409.47 -1.36 -85.96 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -0.56 Total: 21.03 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 6.82 Total: -5.59 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -8.41 Total: -106.18 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.09 Total: -31.40 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -84.59 -1.36 -85.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690833664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.195 kcal (2) G-P(sol) polarization free energy of solvation -84.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds