Wall clock time and date at job start Sat Apr 11 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46769 * 124.34818 * 2 1 4 4 C 1.54479 * 105.47370 * 162.98123 * 3 2 1 5 5 C 1.54629 * 101.76648 * 25.41632 * 4 3 2 6 6 H 1.09000 * 110.48907 * 94.01284 * 5 4 3 7 7 N 1.46898 * 110.48729 * 216.52587 * 5 4 3 8 8 C 1.48532 * 110.99783 * 307.39244 * 7 5 4 9 9 C 1.55199 * 103.23637 * 200.25535 * 8 7 5 10 10 C 1.54591 * 102.80196 * 37.43770 * 9 8 7 11 11 C 1.53005 * 110.30982 * 219.05054 * 10 9 8 12 12 N 1.46494 * 110.31251 * 96.97647 * 10 9 8 13 13 C 1.34784 * 119.99635 * 62.79160 * 12 10 9 14 14 O 1.21279 * 119.99925 * 359.97438 * 13 12 10 15 15 C 1.50700 * 119.99961 * 180.02562 * 13 12 10 16 16 S 1.80996 * 109.47240 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00090 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00086 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00048 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99937 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47255 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.46667 * 120.00384 * 21 19 17 24 24 H 1.48500 * 109.47120 * 239.99937 * 21 19 17 25 25 C 1.47901 * 111.00149 * 189.99992 * 7 5 4 26 26 C 1.34419 * 124.35357 * 179.97438 * 2 1 3 27 27 O 1.21283 * 124.94095 * 0.43818 * 26 2 1 28 28 H 1.09004 * 109.47297 * 90.00380 * 1 2 3 29 29 H 1.09000 * 109.46939 * 210.00179 * 1 2 3 30 30 H 1.08995 * 109.47328 * 330.00208 * 1 2 3 31 31 H 1.08999 * 110.24745 * 43.98012 * 3 2 1 32 32 H 1.09000 * 110.31934 * 282.01989 * 3 2 1 33 33 H 1.09000 * 110.97187 * 267.29770 * 4 3 2 34 34 H 1.09001 * 110.96951 * 143.53400 * 4 3 2 35 35 H 1.09001 * 110.67008 * 318.71231 * 8 7 5 36 36 H 1.09001 * 110.66490 * 81.68252 * 8 7 5 37 37 H 1.09001 * 110.75967 * 279.12457 * 9 8 7 38 38 H 1.09001 * 110.80031 * 155.76345 * 9 8 7 39 39 H 1.08998 * 109.46928 * 297.20701 * 11 10 9 40 40 H 1.09004 * 109.47272 * 57.20483 * 11 10 9 41 41 H 1.09001 * 109.47123 * 177.20781 * 11 10 9 42 42 H 0.96995 * 120.00292 * 243.06592 * 12 10 9 43 43 H 1.09004 * 109.46932 * 300.00223 * 15 13 12 44 44 H 1.08997 * 109.47392 * 59.99562 * 15 13 12 45 45 H 0.97005 * 120.00078 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.91873 * 26.48733 * 25 7 5 47 47 H 1.09005 * 110.07711 * 265.28552 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2930 1.2118 0.0000 4 6 3.7009 0.7488 0.4357 5 6 3.6898 -0.7377 0.0102 6 1 4.1216 -0.8532 -0.9839 7 7 4.4214 -1.5572 0.9855 8 6 5.7808 -1.0098 1.2274 9 6 6.5521 -2.2213 1.8158 10 6 5.9881 -3.4120 1.0072 11 6 5.8054 -4.6308 1.9140 12 7 6.8807 -3.7379 -0.1077 13 6 8.1394 -4.1537 0.1362 14 8 8.5331 -4.2575 1.2786 15 6 9.0579 -4.4885 -1.0107 16 16 10.6655 -5.0107 -0.3635 17 6 11.5139 -5.3316 -1.8741 18 1 11.0099 -5.1856 -2.8181 19 6 12.8303 -5.7711 -1.8510 20 7 13.4447 -5.9486 -0.7005 21 14 13.7299 -6.1106 -3.4525 22 1 12.8246 -5.8350 -4.5968 23 1 14.9247 -5.2333 -3.5446 24 1 14.1560 -7.5326 -3.4891 25 6 4.6245 -2.9311 0.4771 26 6 2.2235 -1.1097 0.0005 27 8 1.7947 -2.2442 -0.0066 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.8983 1.9384 0.7101 32 1 2.3309 1.6444 -0.9998 33 1 3.8268 0.8449 1.5142 34 1 4.4753 1.3011 -0.0966 35 1 6.2352 -0.6813 0.2927 36 1 5.7433 -0.1899 1.9446 37 1 6.3352 -2.3387 2.8775 38 1 7.6242 -2.1154 1.6494 39 1 6.7750 -4.9444 2.3008 40 1 5.1497 -4.3704 2.7449 41 1 5.3614 -5.4457 1.3423 42 1 6.5672 -3.6508 -1.0215 43 1 8.6235 -5.2958 -1.6003 44 1 9.1886 -3.6085 -1.6404 45 1 14.3648 -6.2554 -0.6843 46 1 4.6305 -2.9266 -0.6129 47 1 3.8327 -3.5858 0.8412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699808976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:00 Heat of formation + Delta-G solvation = -50.236520 kcal Electronic energy + Delta-G solvation = -27757.788602 eV Core-core repulsion = 23874.141790 eV Total energy + Delta-G solvation = -3883.646812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14486 -39.97449 -38.01542 -36.73586 -34.77041 -32.63011 -32.42953 -31.04094 -29.81733 -28.48776 -27.48260 -27.04586 -25.49343 -24.98401 -22.91671 -21.26896 -20.97766 -19.71095 -19.24699 -17.85471 -17.44863 -17.19828 -16.40428 -16.15782 -15.64879 -15.62402 -14.92942 -14.80855 -14.51092 -14.32027 -14.20202 -13.92200 -13.73278 -13.33645 -13.15191 -13.02407 -12.93142 -12.81201 -12.57661 -12.55987 -12.36453 -12.28453 -11.84325 -11.72056 -11.51686 -11.33955 -11.07857 -11.03717 -11.01862 -10.76230 -10.75474 -10.08369 -9.80400 -9.23471 -9.15467 -9.07924 -8.86053 -8.75688 -8.22935 -6.49529 -6.22124 -3.92179 2.19225 2.56925 3.02237 3.11173 3.21100 3.27596 3.32016 3.57915 3.74117 3.85322 4.03259 4.20159 4.32626 4.48761 4.53701 4.65376 4.77489 4.84705 4.91805 4.97740 5.04678 5.07938 5.13177 5.17116 5.24443 5.28096 5.31039 5.38721 5.46972 5.61848 5.67452 5.83007 5.87744 5.88636 5.90418 6.02443 6.06505 6.14479 6.20420 6.40472 6.46689 6.55933 6.68822 6.84454 7.59696 7.75031 7.83506 8.35179 8.65229 9.23500 10.85302 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.002107 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.731654 B =13287.037479 C =13623.438512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.626 5.626 3 C 0.105 3.895 4 C -0.128 4.128 5 C 0.040 3.960 6 H 0.082 0.918 7 N -0.496 5.496 8 C 0.035 3.965 9 C -0.123 4.123 10 C 0.168 3.832 11 C -0.157 4.157 12 N -0.732 5.732 13 C 0.535 3.465 14 O -0.511 6.511 15 C -0.155 4.155 16 S -0.058 6.058 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.044 3.956 26 C 0.530 3.470 27 O -0.518 6.518 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.395 0.605 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.268 0.732 46 H 0.050 0.950 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.043 16.885 1.086 30.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.362 5.362 3 C -0.019 4.019 4 C -0.166 4.166 5 C -0.072 4.072 6 H 0.100 0.900 7 N -0.221 5.221 8 C -0.092 4.092 9 C -0.162 4.162 10 C 0.081 3.919 11 C -0.215 4.215 12 N -0.387 5.387 13 C 0.321 3.679 14 O -0.385 6.385 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.084 4.084 26 C 0.316 3.684 27 O -0.392 6.392 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.229 0.771 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.872 16.043 3.556 29.810 hybrid contribution 0.336 0.085 -3.740 3.756 sum -24.536 16.129 -0.184 29.363 Atomic orbital electron populations 1.21539 0.77828 1.03233 1.01838 1.48071 1.06527 1.07328 1.74234 1.22095 0.90407 0.87423 1.01936 1.22767 0.96567 0.93428 1.03856 1.22547 0.93376 0.94676 0.96593 0.90030 1.64790 1.16186 1.01590 1.39529 1.23375 0.87303 0.98377 1.00189 1.22919 1.00806 0.92308 1.00157 1.21056 0.88100 0.95503 0.87266 1.22176 1.03862 0.96446 0.98995 1.46286 1.13057 1.70508 1.08824 1.20233 0.81256 0.75718 0.90700 1.90666 1.74655 1.50597 1.22561 1.23552 1.02735 1.04420 0.99816 1.85367 1.00441 1.85946 1.11431 1.22909 1.00255 1.52179 0.92971 0.90948 1.24992 0.96455 0.94821 0.97359 1.70026 1.12286 1.43373 1.24579 0.86124 0.79305 0.78111 0.81993 1.19650 1.20576 1.20557 1.23198 0.96623 0.90472 0.98148 1.20567 0.88522 0.84362 0.74922 1.90713 1.78370 1.20983 1.49181 0.92648 0.90597 0.90987 0.90046 0.90965 0.88591 0.88940 0.93334 0.89556 0.89800 0.89296 0.89770 0.91713 0.92681 0.77105 0.89356 0.89467 0.92246 0.93135 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 10.96 59.84 0.66 1.21 16 2 N -0.63 -4.72 3.33 -180.29 -0.60 -5.32 16 3 C 0.10 0.46 7.35 -3.12 -0.02 0.43 16 4 C -0.13 -0.65 5.79 -25.10 -0.15 -0.80 16 5 C 0.04 0.34 2.48 -67.72 -0.17 0.17 16 6 H 0.08 0.66 7.78 -51.93 -0.40 0.25 16 7 N -0.50 -4.97 5.09 -222.34 -1.13 -6.10 16 8 C 0.03 0.33 5.59 -1.76 -0.01 0.32 16 9 C -0.12 -1.50 5.85 -24.73 -0.14 -1.65 16 10 C 0.17 2.10 0.94 -130.47 -0.12 1.98 16 11 C -0.16 -2.11 8.14 37.16 0.30 -1.81 16 12 N -0.73 -9.91 5.15 -46.35 -0.24 -10.15 16 13 C 0.53 9.68 7.04 -10.98 -0.08 9.61 16 14 O -0.51 -10.93 12.73 5.56 0.07 -10.86 16 15 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 16 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 17 C -0.53 -15.21 9.50 30.94 0.29 -14.92 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.04 0.49 5.28 -2.75 -0.01 0.47 16 26 C 0.53 5.62 7.63 -10.86 -0.08 5.53 16 27 O -0.52 -7.45 16.42 5.55 0.09 -7.36 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.53 7.93 -51.93 -0.41 0.12 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.10 0.52 7.55 -51.93 -0.39 0.13 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.44 8.02 -51.93 -0.42 0.02 16 36 H 0.09 0.68 7.59 -51.93 -0.39 0.29 16 37 H 0.08 1.01 7.86 -51.93 -0.41 0.61 16 38 H 0.09 1.31 6.68 -51.93 -0.35 0.96 16 39 H 0.08 1.38 6.17 -51.93 -0.32 1.06 16 40 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.39 4.39 8.09 -40.82 -0.33 4.06 16 43 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 44 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.05 0.54 6.87 -51.93 -0.36 0.18 16 47 H 0.10 1.25 7.34 -51.93 -0.38 0.87 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -35.96 386.87 -9.40 -45.36 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.51 Total: 1.69 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 0.59 Total: -0.33 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -1.24 Total: -46.94 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.16 Total: -18.22 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.96 -9.40 -45.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699808976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.872 kcal (2) G-P(sol) polarization free energy of solvation -35.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds