Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46769 * 124.34818 * 2 1 4 4 C 1.54479 * 105.47370 * 162.98123 * 3 2 1 5 5 C 1.54629 * 101.76648 * 25.41632 * 4 3 2 6 6 H 1.09000 * 110.48907 * 94.01284 * 5 4 3 7 7 N 1.46898 * 110.48729 * 216.52587 * 5 4 3 8 8 C 1.48532 * 110.99783 * 307.39244 * 7 5 4 9 9 C 1.55199 * 103.23637 * 200.25535 * 8 7 5 10 10 C 1.54591 * 102.80196 * 37.43770 * 9 8 7 11 11 C 1.53005 * 110.30982 * 219.05054 * 10 9 8 12 12 N 1.46494 * 110.31251 * 96.97647 * 10 9 8 13 13 C 1.34784 * 119.99635 * 62.79160 * 12 10 9 14 14 O 1.21279 * 119.99925 * 359.97438 * 13 12 10 15 15 C 1.50700 * 119.99961 * 180.02562 * 13 12 10 16 16 S 1.80996 * 109.47240 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00090 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00086 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00048 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99937 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47255 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.46667 * 120.00384 * 21 19 17 24 24 H 1.48500 * 109.47120 * 239.99937 * 21 19 17 25 25 C 1.47901 * 111.00149 * 189.99992 * 7 5 4 26 26 C 1.34419 * 124.35357 * 179.97438 * 2 1 3 27 27 O 1.21283 * 124.94095 * 0.43818 * 26 2 1 28 28 H 1.09004 * 109.47297 * 90.00380 * 1 2 3 29 29 H 1.09000 * 109.46939 * 210.00179 * 1 2 3 30 30 H 1.08995 * 109.47328 * 330.00208 * 1 2 3 31 31 H 1.08999 * 110.24745 * 43.98012 * 3 2 1 32 32 H 1.09000 * 110.31934 * 282.01989 * 3 2 1 33 33 H 1.09000 * 110.97187 * 267.29770 * 4 3 2 34 34 H 1.09001 * 110.96951 * 143.53400 * 4 3 2 35 35 H 1.09001 * 110.67008 * 318.71231 * 8 7 5 36 36 H 1.09001 * 110.66490 * 81.68252 * 8 7 5 37 37 H 1.09001 * 110.75967 * 279.12457 * 9 8 7 38 38 H 1.09001 * 110.80031 * 155.76345 * 9 8 7 39 39 H 1.08998 * 109.46928 * 297.20701 * 11 10 9 40 40 H 1.09004 * 109.47272 * 57.20483 * 11 10 9 41 41 H 1.09001 * 109.47123 * 177.20781 * 11 10 9 42 42 H 0.96995 * 120.00292 * 243.06592 * 12 10 9 43 43 H 1.09004 * 109.46932 * 300.00223 * 15 13 12 44 44 H 1.08997 * 109.47392 * 59.99562 * 15 13 12 45 45 H 0.97005 * 120.00078 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.91873 * 26.48733 * 25 7 5 47 47 H 1.09005 * 110.07711 * 265.28552 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2930 1.2118 0.0000 4 6 3.7009 0.7488 0.4357 5 6 3.6898 -0.7377 0.0102 6 1 4.1216 -0.8532 -0.9839 7 7 4.4214 -1.5572 0.9855 8 6 5.7808 -1.0098 1.2274 9 6 6.5521 -2.2213 1.8158 10 6 5.9881 -3.4120 1.0072 11 6 5.8054 -4.6308 1.9140 12 7 6.8807 -3.7379 -0.1077 13 6 8.1394 -4.1537 0.1362 14 8 8.5331 -4.2575 1.2786 15 6 9.0579 -4.4885 -1.0107 16 16 10.6655 -5.0107 -0.3635 17 6 11.5139 -5.3316 -1.8741 18 1 11.0099 -5.1856 -2.8181 19 6 12.8303 -5.7711 -1.8510 20 7 13.4447 -5.9486 -0.7005 21 14 13.7299 -6.1106 -3.4525 22 1 12.8246 -5.8350 -4.5968 23 1 14.9247 -5.2333 -3.5446 24 1 14.1560 -7.5326 -3.4891 25 6 4.6245 -2.9311 0.4771 26 6 2.2235 -1.1097 0.0005 27 8 1.7947 -2.2442 -0.0066 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.8983 1.9384 0.7101 32 1 2.3309 1.6444 -0.9998 33 1 3.8268 0.8449 1.5142 34 1 4.4753 1.3011 -0.0966 35 1 6.2352 -0.6813 0.2927 36 1 5.7433 -0.1899 1.9446 37 1 6.3352 -2.3387 2.8775 38 1 7.6242 -2.1154 1.6494 39 1 6.7750 -4.9444 2.3008 40 1 5.1497 -4.3704 2.7449 41 1 5.3614 -5.4457 1.3423 42 1 6.5672 -3.6508 -1.0215 43 1 8.6235 -5.2958 -1.6003 44 1 9.1886 -3.6085 -1.6404 45 1 14.3648 -6.2554 -0.6843 46 1 4.6305 -2.9266 -0.6129 47 1 3.8327 -3.5858 0.8412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699808976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = -77.814919 kcal Electronic energy + Delta-G solvation = -27758.984491 eV Core-core repulsion = 23874.141790 eV Total energy + Delta-G solvation = -3884.842701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.91845 -41.05928 -39.14928 -37.46208 -35.79006 -34.58731 -33.59075 -32.00512 -30.68821 -29.94518 -28.09033 -27.72462 -27.65593 -25.82489 -23.60672 -22.33704 -21.85295 -20.53572 -20.30176 -19.81300 -18.06512 -18.01940 -17.68141 -17.17545 -16.88451 -16.56736 -16.53961 -16.15636 -15.91829 -15.20807 -15.09570 -14.76899 -14.69189 -14.51143 -14.37488 -14.26394 -13.85700 -13.65831 -13.58021 -13.37347 -13.24429 -13.15531 -13.05163 -12.93309 -12.91288 -12.60260 -12.42026 -12.35744 -12.07281 -12.02085 -11.75530 -11.70524 -11.16094 -10.84717 -10.70694 -10.26606 -10.10508 -9.71647 -9.53184 -8.65380 -8.35121 -6.12253 1.26559 1.40600 1.44744 1.48012 1.57802 1.64811 2.04173 2.22691 2.28228 2.95100 2.99004 3.18177 3.31699 3.43553 3.54689 3.74902 3.86690 3.98652 4.03950 4.12940 4.23660 4.28643 4.34641 4.36497 4.39359 4.48807 4.51699 4.63620 4.70360 4.72207 4.77847 4.86374 4.86596 4.91409 4.97489 5.04158 5.13201 5.16635 5.28748 5.41827 5.45161 5.57481 5.78702 5.85509 6.08670 6.19692 6.52120 7.06493 7.14106 7.27564 8.74174 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.002107 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.731654 B =13287.037479 C =13623.438512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.624 5.624 3 C 0.102 3.898 4 C -0.120 4.120 5 C 0.038 3.962 6 H 0.089 0.911 7 N -0.503 5.503 8 C 0.047 3.953 9 C -0.124 4.124 10 C 0.166 3.834 11 C -0.153 4.153 12 N -0.709 5.709 13 C 0.539 3.461 14 O -0.548 6.548 15 C -0.131 4.131 16 S -0.144 6.144 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.910 5.910 21 Si 0.998 3.002 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.275 1.275 25 C 0.056 3.944 26 C 0.515 3.485 27 O -0.570 6.570 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.410 0.590 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.058 0.942 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.374 19.440 -0.911 32.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.358 5.358 3 C -0.020 4.020 4 C -0.158 4.158 5 C -0.074 4.074 6 H 0.106 0.894 7 N -0.228 5.228 8 C -0.080 4.080 9 C -0.163 4.163 10 C 0.080 3.920 11 C -0.211 4.211 12 N -0.363 5.363 13 C 0.325 3.675 14 O -0.425 6.425 15 C -0.282 4.282 16 S 0.083 5.917 17 C -0.694 4.694 18 H 0.099 0.901 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.200 1.200 25 C -0.073 4.073 26 C 0.302 3.698 27 O -0.449 6.449 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.247 0.753 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.255 18.667 1.538 32.251 hybrid contribution 0.584 -0.645 -3.074 3.195 sum -25.670 18.022 -1.536 31.402 Atomic orbital electron populations 1.21677 0.77066 1.03700 1.02478 1.48293 1.07368 1.07693 1.72455 1.22368 0.89403 0.86405 1.03790 1.22831 0.97850 0.90940 1.04179 1.22649 0.91744 0.96390 0.96629 0.89352 1.64754 1.16521 1.01146 1.40388 1.23330 0.86376 0.97396 1.00910 1.22848 0.99565 0.93627 1.00239 1.21159 0.88675 0.95361 0.86820 1.22119 1.02274 0.97067 0.99684 1.46034 1.11453 1.68658 1.10196 1.19924 0.82282 0.75874 0.89460 1.90669 1.75627 1.52492 1.23716 1.23391 0.98857 1.05526 1.00474 1.85522 1.05735 1.86789 1.13636 1.23234 1.00843 1.52192 0.93134 0.90113 1.26114 0.97399 0.94291 1.01380 1.70184 1.12796 1.44407 1.27308 0.84919 0.77913 0.78029 0.77168 1.18140 1.19818 1.20008 1.22985 0.94613 0.91287 0.98404 1.21049 0.89834 0.84323 0.74582 1.90679 1.79363 1.23027 1.51829 0.91941 0.92622 0.88025 0.87771 0.89016 0.88619 0.86548 0.92398 0.87463 0.90056 0.91875 0.92858 0.90479 0.92495 0.75277 0.87811 0.87441 0.91998 0.92362 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 10.96 127.77 1.40 2.29 16 2 N -0.62 -8.02 3.33 -842.90 -2.81 -10.82 16 3 C 0.10 0.49 7.35 86.83 0.64 1.13 16 4 C -0.12 -0.77 5.79 31.65 0.18 -0.59 16 5 C 0.04 0.55 2.48 44.91 0.11 0.66 16 6 H 0.09 1.17 7.78 -2.39 -0.02 1.15 16 7 N -0.50 -9.18 5.09 -857.34 -4.37 -13.54 16 8 C 0.05 0.77 5.59 86.74 0.49 1.25 16 9 C -0.12 -2.97 5.85 31.89 0.19 -2.78 16 10 C 0.17 4.09 0.94 4.48 0.00 4.10 16 11 C -0.15 -4.22 8.14 71.98 0.59 -3.64 16 12 N -0.71 -18.56 5.15 -418.95 -2.16 -20.72 16 13 C 0.54 19.55 7.04 87.66 0.62 20.17 16 14 O -0.55 -24.27 12.73 -3.03 -0.04 -24.31 16 15 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 16 S -0.14 -7.95 20.57 -56.49 -1.16 -9.11 16 17 C -0.55 -31.21 9.50 67.95 0.65 -30.57 16 18 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 19 C 0.01 0.74 5.49 84.86 0.47 1.20 16 20 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 21 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 C 0.06 1.19 5.28 86.45 0.46 1.65 16 26 C 0.52 10.30 7.63 87.90 0.67 10.97 16 27 O -0.57 -16.57 16.42 -3.04 -0.05 -16.62 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.77 7.93 -2.39 -0.02 0.76 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.10 0.67 7.55 -2.39 -0.02 0.65 16 34 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.06 0.87 8.02 -2.39 -0.02 0.85 16 36 H 0.11 1.36 7.59 -2.39 -0.02 1.34 16 37 H 0.08 1.97 7.86 -2.39 -0.02 1.95 16 38 H 0.06 1.87 6.68 -2.39 -0.02 1.86 16 39 H 0.05 1.82 6.17 -2.39 -0.01 1.81 16 40 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.41 8.30 8.09 -92.71 -0.75 7.55 16 43 H 0.10 3.78 8.14 -2.39 -0.02 3.77 16 44 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 45 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 46 H 0.06 1.15 6.87 -2.39 -0.02 1.13 16 47 H 0.08 2.12 7.34 -2.38 -0.02 2.10 16 Total: -1.00 -82.19 386.87 -1.16 -83.35 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.23 Total: 20.57 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 6.89 Total: 1.11 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -9.05 Total: -100.71 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.09 Total: -40.93 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -82.19 -1.16 -83.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699808976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.534 kcal (2) G-P(sol) polarization free energy of solvation -82.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds