Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34333 * 126.44213 * 2 1 4 4 N 1.34475 * 107.66603 * 179.97438 * 3 2 1 5 5 C 1.30256 * 108.70238 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.61703 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47043 * 195.02793 * 6 5 4 8 8 C 1.52998 * 109.47135 * 75.02469 * 6 5 4 9 9 N 1.46905 * 109.47039 * 315.02453 * 6 5 4 10 10 C 1.46896 * 111.00102 * 205.00039 * 9 6 5 11 11 C 1.52997 * 109.47453 * 179.97438 * 10 9 6 12 12 H 1.08999 * 109.47488 * 305.00272 * 11 10 9 13 13 C 1.53007 * 109.46763 * 65.00195 * 11 10 9 14 14 C 1.53001 * 109.47519 * 184.99832 * 11 10 9 15 15 N 1.46493 * 109.47084 * 175.00001 * 14 11 10 16 16 C 1.34784 * 119.99864 * 180.02562 * 15 14 11 17 17 O 1.21283 * 119.99649 * 359.72839 * 16 15 14 18 18 C 1.50694 * 119.99988 * 179.72721 * 16 15 14 19 19 S 1.81005 * 109.47244 * 179.97438 * 18 16 15 20 20 C 1.76192 * 100.00090 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00308 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99747 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00171 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47031 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47042 * 119.99895 * 24 22 20 27 27 H 1.48504 * 109.46790 * 239.99932 * 24 22 20 28 28 O 1.33964 * 108.75966 * 0.23051 * 5 4 3 29 29 H 1.08999 * 109.47131 * 90.02516 * 1 2 3 30 30 H 1.09009 * 109.46875 * 210.02409 * 1 2 3 31 31 H 1.08999 * 109.47398 * 330.01663 * 1 2 3 32 32 H 1.07996 * 126.16281 * 359.95088 * 3 2 1 33 33 H 1.08992 * 109.47495 * 59.99821 * 8 6 5 34 34 H 1.09011 * 109.47136 * 180.02562 * 8 6 5 35 35 H 1.09002 * 109.47093 * 299.99388 * 8 6 5 36 36 H 1.00900 * 111.00200 * 81.04865 * 9 6 5 37 37 H 1.09007 * 109.46844 * 59.99731 * 10 9 6 38 38 H 1.09002 * 109.47406 * 300.00055 * 10 9 6 39 39 H 1.08995 * 109.47177 * 180.02562 * 13 11 10 40 40 H 1.08996 * 109.46781 * 299.99928 * 13 11 10 41 41 H 1.08999 * 109.47056 * 59.99813 * 13 11 10 42 42 H 1.09007 * 109.46593 * 55.00258 * 14 11 10 43 43 H 1.09006 * 109.47216 * 295.00716 * 14 11 10 44 44 H 0.97000 * 120.00740 * 359.72857 * 15 14 11 45 45 H 1.08998 * 109.47224 * 299.99701 * 18 16 15 46 46 H 1.09002 * 109.47054 * 60.00213 * 18 16 15 47 47 H 0.97000 * 119.99868 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5765 -0.6547 0.0015 6 6 4.8004 -1.5339 0.0018 7 1 4.5164 -2.5522 -0.2639 8 6 5.4324 -1.5278 1.3951 9 7 5.7695 -1.0245 -0.9777 10 6 6.6585 -2.0964 -1.4452 11 6 7.6509 -1.5289 -2.4620 12 1 7.1051 -1.0354 -3.2661 13 6 8.5664 -0.5165 -1.7707 14 6 8.4942 -2.6665 -3.0414 15 7 9.3608 -2.1419 -4.0996 16 6 10.1974 -2.9690 -4.7575 17 8 10.2362 -4.1466 -4.4699 18 6 11.0843 -2.4305 -5.8503 19 16 12.0832 -3.7760 -6.5346 20 6 12.9962 -2.8899 -7.7535 21 1 12.8377 -1.8293 -7.8818 22 6 13.9191 -3.5549 -8.5488 23 7 14.1126 -4.8474 -8.3920 24 14 14.8876 -2.6153 -9.8406 25 1 14.4880 -1.1854 -9.8159 26 1 16.3396 -2.7291 -9.5505 27 1 14.6048 -3.1848 -11.1826 28 8 2.3075 -1.0839 -0.0036 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8899 0.5143 31 1 -0.3634 0.8901 0.5136 32 1 1.9821 2.1112 -0.0007 33 1 4.7134 -1.9057 2.1219 34 1 6.3180 -2.1634 1.3952 35 1 5.7165 -0.5095 1.6607 36 1 6.2998 -0.2558 -0.5957 37 1 6.0656 -2.8809 -1.9155 38 1 7.2038 -2.5118 -0.5977 39 1 9.2731 -0.1118 -2.4951 40 1 7.9656 0.2939 -1.3580 41 1 9.1123 -1.0100 -0.9666 42 1 7.8371 -3.4313 -3.4556 43 1 9.1072 -3.1026 -2.2525 44 1 9.3295 -1.2001 -4.3299 45 1 10.4681 -1.9979 -6.6384 46 1 11.7411 -1.6633 -5.4402 47 1 14.7573 -5.3122 -8.9481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714375063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = -27.856153 kcal Electronic energy + Delta-G solvation = -25850.677398 eV Core-core repulsion = 21968.001072 eV Total energy + Delta-G solvation = -3882.676327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.66312 -39.36628 -38.23202 -35.95529 -34.94201 -33.36147 -32.42656 -32.39234 -30.19449 -29.09926 -27.28549 -26.78635 -25.50901 -24.80058 -23.81533 -22.11060 -21.07072 -20.61180 -20.21141 -17.88482 -17.61880 -17.07823 -16.45832 -16.32571 -15.78016 -15.50621 -15.28942 -15.07893 -14.79272 -14.46962 -14.34192 -13.94901 -13.83594 -13.71545 -13.43597 -13.31109 -13.06866 -12.89320 -12.85896 -12.82296 -12.54313 -12.49550 -11.94904 -11.83286 -11.61096 -11.32812 -11.16205 -11.06488 -11.05228 -11.00304 -10.80453 -10.73980 -9.79079 -9.38406 -9.09358 -9.06512 -8.92612 -8.83520 -8.21408 -6.48337 -6.20560 -3.90797 1.07021 2.13541 2.37121 3.05162 3.13382 3.22586 3.29190 3.33857 3.60728 3.67501 3.88790 4.21704 4.30329 4.41587 4.47153 4.58174 4.61955 4.63727 4.68837 4.85928 4.89439 4.97205 5.09310 5.13120 5.14776 5.17894 5.23282 5.33466 5.35669 5.46641 5.53859 5.56636 5.62268 5.67763 5.69818 5.76180 5.91742 5.97003 5.99344 6.04714 6.16525 6.41255 6.66148 6.87540 7.42936 7.61283 7.74232 8.36810 8.64753 9.25021 10.86952 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.001446 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.546225 B =19361.345636 C =19622.944026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.053 4.053 3 C -0.043 4.043 4 N -0.467 5.467 5 C 0.203 3.797 6 C 0.184 3.816 7 H 0.106 0.894 8 C -0.178 4.178 9 N -0.675 5.675 10 C 0.067 3.933 11 C -0.101 4.101 12 H 0.088 0.912 13 C -0.152 4.152 14 C 0.127 3.873 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 O -0.203 6.203 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.181 0.819 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.355 0.645 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.634 11.833 21.143 35.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 C -0.182 4.182 4 N -0.196 5.196 5 C -0.005 4.005 6 C 0.072 3.928 7 H 0.124 0.876 8 C -0.238 4.238 9 N -0.309 5.309 10 C -0.062 4.062 11 C -0.120 4.120 12 H 0.106 0.894 13 C -0.210 4.210 14 C 0.003 3.997 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 O -0.089 6.089 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.199 0.801 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.177 0.823 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.361 9.959 21.036 34.422 hybrid contribution 0.394 2.055 -0.566 2.167 sum -24.967 12.014 20.470 34.449 Atomic orbital electron populations 1.20266 0.84037 1.04284 1.03856 1.23459 0.95004 0.84647 1.07540 1.23100 0.87940 1.00298 1.06875 1.70352 1.22713 1.09146 1.17341 1.26078 0.83870 0.90274 1.00237 1.19617 0.85534 0.95260 0.92391 0.87609 1.22486 1.01721 1.03689 0.95856 1.60138 1.19786 1.10883 1.40091 1.21975 0.93611 0.93315 0.97280 1.21355 0.95715 0.96426 0.98537 0.89358 1.21902 0.99373 0.98770 1.00933 1.21228 0.92662 0.95507 0.90350 1.45979 1.42284 1.12333 1.38588 1.20298 0.79638 0.86247 0.82084 1.90699 1.66844 1.16252 1.65531 1.23530 1.01514 1.06327 0.99041 1.85390 1.45839 1.08561 1.43663 1.22916 1.26373 0.97179 1.21848 0.90874 1.24989 0.96313 0.95045 0.97222 1.70029 1.33740 1.07852 1.38692 0.86120 0.79358 0.79602 0.80434 1.19616 1.20573 1.20575 1.84365 1.17817 1.36727 1.70040 0.89759 0.90406 0.89014 0.80150 0.91383 0.90631 0.91111 0.82339 0.90177 0.94042 0.92005 0.92231 0.92443 0.91562 0.91602 0.76792 0.89232 0.89254 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.43 36.01 0.38 0.13 16 2 C -0.05 -0.42 7.39 -35.69 -0.26 -0.68 16 3 C -0.04 -0.37 11.80 -17.77 -0.21 -0.58 16 4 N -0.47 -4.89 11.28 -11.10 -0.13 -5.02 16 5 C 0.20 1.94 7.19 -12.95 -0.09 1.84 16 6 C 0.18 1.30 3.13 -68.86 -0.22 1.08 16 7 H 0.11 0.65 7.80 -51.93 -0.40 0.25 16 8 C -0.18 -0.97 9.14 37.16 0.34 -0.63 16 9 N -0.68 -5.01 6.22 -107.95 -0.67 -5.68 16 10 C 0.07 0.46 4.94 -3.83 -0.02 0.44 16 11 C -0.10 -0.80 2.63 -90.62 -0.24 -1.04 16 12 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 13 C -0.15 -1.10 8.84 37.16 0.33 -0.78 16 14 C 0.13 1.41 5.06 -4.04 -0.02 1.39 16 15 N -0.74 -9.69 5.28 -60.29 -0.32 -10.01 16 16 C 0.53 9.93 7.85 -10.98 -0.09 9.84 16 17 O -0.52 -11.84 15.86 5.56 0.09 -11.75 16 18 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 24 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 O -0.20 -1.95 10.77 5.39 0.06 -1.90 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.34 7.45 -51.92 -0.39 -0.05 16 35 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 36 H 0.36 2.56 6.72 -39.29 -0.26 2.30 16 37 H 0.08 0.56 8.06 -51.92 -0.42 0.15 16 38 H 0.04 0.25 7.44 -51.93 -0.39 -0.13 16 39 H 0.06 0.47 7.19 -51.93 -0.37 0.10 16 40 H 0.06 0.39 6.68 -51.93 -0.35 0.04 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.40 4.16 7.66 -40.82 -0.31 3.84 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 46 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 406.36 15.07 6.12 6.12 Total: -1.00 -36.66 406.36 -8.54 -45.19 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.51 Total: 0.87 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 0.32 Total: -4.89 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.38 Total: -46.24 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.15 Total: -13.65 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.66 -8.54 -45.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714375063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.338 kcal (2) G-P(sol) polarization free energy of solvation -36.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds