Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34333 * 126.44213 * 2 1 4 4 N 1.34475 * 107.66603 * 179.97438 * 3 2 1 5 5 C 1.30256 * 108.70238 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.61703 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47043 * 195.02793 * 6 5 4 8 8 C 1.52998 * 109.47135 * 75.02469 * 6 5 4 9 9 N 1.46905 * 109.47039 * 315.02453 * 6 5 4 10 10 C 1.46896 * 111.00102 * 205.00039 * 9 6 5 11 11 C 1.52997 * 109.47453 * 179.97438 * 10 9 6 12 12 H 1.08999 * 109.47488 * 305.00272 * 11 10 9 13 13 C 1.53007 * 109.46763 * 65.00195 * 11 10 9 14 14 C 1.53001 * 109.47519 * 184.99832 * 11 10 9 15 15 N 1.46493 * 109.47084 * 175.00001 * 14 11 10 16 16 C 1.34784 * 119.99864 * 180.02562 * 15 14 11 17 17 O 1.21283 * 119.99649 * 359.72839 * 16 15 14 18 18 C 1.50694 * 119.99988 * 179.72721 * 16 15 14 19 19 S 1.81005 * 109.47244 * 179.97438 * 18 16 15 20 20 C 1.76192 * 100.00090 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00308 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99747 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00171 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47031 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47042 * 119.99895 * 24 22 20 27 27 H 1.48504 * 109.46790 * 239.99932 * 24 22 20 28 28 O 1.33964 * 108.75966 * 0.23051 * 5 4 3 29 29 H 1.08999 * 109.47131 * 90.02516 * 1 2 3 30 30 H 1.09009 * 109.46875 * 210.02409 * 1 2 3 31 31 H 1.08999 * 109.47398 * 330.01663 * 1 2 3 32 32 H 1.07996 * 126.16281 * 359.95088 * 3 2 1 33 33 H 1.08992 * 109.47495 * 59.99821 * 8 6 5 34 34 H 1.09011 * 109.47136 * 180.02562 * 8 6 5 35 35 H 1.09002 * 109.47093 * 299.99388 * 8 6 5 36 36 H 1.00900 * 111.00200 * 81.04865 * 9 6 5 37 37 H 1.09007 * 109.46844 * 59.99731 * 10 9 6 38 38 H 1.09002 * 109.47406 * 300.00055 * 10 9 6 39 39 H 1.08995 * 109.47177 * 180.02562 * 13 11 10 40 40 H 1.08996 * 109.46781 * 299.99928 * 13 11 10 41 41 H 1.08999 * 109.47056 * 59.99813 * 13 11 10 42 42 H 1.09007 * 109.46593 * 55.00258 * 14 11 10 43 43 H 1.09006 * 109.47216 * 295.00716 * 14 11 10 44 44 H 0.97000 * 120.00740 * 359.72857 * 15 14 11 45 45 H 1.08998 * 109.47224 * 299.99701 * 18 16 15 46 46 H 1.09002 * 109.47054 * 60.00213 * 18 16 15 47 47 H 0.97000 * 119.99868 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5765 -0.6547 0.0015 6 6 4.8004 -1.5339 0.0018 7 1 4.5164 -2.5522 -0.2639 8 6 5.4324 -1.5278 1.3951 9 7 5.7695 -1.0245 -0.9777 10 6 6.6585 -2.0964 -1.4452 11 6 7.6509 -1.5289 -2.4620 12 1 7.1051 -1.0354 -3.2661 13 6 8.5664 -0.5165 -1.7707 14 6 8.4942 -2.6665 -3.0414 15 7 9.3608 -2.1419 -4.0996 16 6 10.1974 -2.9690 -4.7575 17 8 10.2362 -4.1466 -4.4699 18 6 11.0843 -2.4305 -5.8503 19 16 12.0832 -3.7760 -6.5346 20 6 12.9962 -2.8899 -7.7535 21 1 12.8377 -1.8293 -7.8818 22 6 13.9191 -3.5549 -8.5488 23 7 14.1126 -4.8474 -8.3920 24 14 14.8876 -2.6153 -9.8406 25 1 14.4880 -1.1854 -9.8159 26 1 16.3396 -2.7291 -9.5505 27 1 14.6048 -3.1848 -11.1826 28 8 2.3075 -1.0839 -0.0036 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8899 0.5143 31 1 -0.3634 0.8901 0.5136 32 1 1.9821 2.1112 -0.0007 33 1 4.7134 -1.9057 2.1219 34 1 6.3180 -2.1634 1.3952 35 1 5.7165 -0.5095 1.6607 36 1 6.2998 -0.2558 -0.5957 37 1 6.0656 -2.8809 -1.9155 38 1 7.2038 -2.5118 -0.5977 39 1 9.2731 -0.1118 -2.4951 40 1 7.9656 0.2939 -1.3580 41 1 9.1123 -1.0100 -0.9666 42 1 7.8371 -3.4313 -3.4556 43 1 9.1072 -3.1026 -2.2525 44 1 9.3295 -1.2001 -4.3299 45 1 10.4681 -1.9979 -6.6384 46 1 11.7411 -1.6633 -5.4402 47 1 14.7573 -5.3122 -8.9481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714375063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = -56.602794 kcal Electronic energy + Delta-G solvation = -25851.923946 eV Core-core repulsion = 21968.001072 eV Total energy + Delta-G solvation = -3883.922874 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.28607 -40.68487 -38.97913 -36.84422 -35.61750 -34.58392 -34.30512 -33.00218 -31.21269 -30.15195 -27.79905 -27.73495 -27.42769 -25.57768 -24.46872 -22.69857 -21.78524 -21.65997 -21.18827 -19.80085 -18.32321 -17.73528 -17.71568 -17.41958 -16.87728 -16.76612 -16.48127 -16.14950 -15.81257 -15.67359 -15.24738 -15.02303 -14.69673 -14.43852 -14.28668 -14.15147 -13.90863 -13.84934 -13.71611 -13.52103 -13.23414 -13.19115 -13.15248 -12.96895 -12.90499 -12.60711 -12.44392 -12.29079 -12.03067 -11.84835 -11.76021 -11.68254 -11.46002 -11.15329 -10.94734 -10.26523 -10.08365 -9.65527 -9.46656 -8.65857 -8.34305 -6.12157 0.46904 1.27968 1.41841 1.47642 1.57234 1.60935 1.63585 1.74503 2.26704 2.32161 3.00031 3.10115 3.18925 3.33944 3.80354 3.85330 3.90621 3.93168 4.03616 4.07600 4.08256 4.14289 4.31111 4.42364 4.48870 4.52417 4.56898 4.59929 4.66573 4.67930 4.76169 4.80640 4.82591 4.97669 5.03106 5.05403 5.14131 5.20330 5.27602 5.38078 5.39521 5.42827 5.50270 5.86856 6.20672 6.33276 6.52556 6.79781 7.07289 7.26544 8.75217 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.001446 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.546225 B =19361.345636 C =19622.944026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.055 4.055 3 C -0.066 4.066 4 N -0.492 5.492 5 C 0.189 3.811 6 C 0.184 3.816 7 H 0.113 0.887 8 C -0.170 4.170 9 N -0.682 5.682 10 C 0.071 3.929 11 C -0.087 4.087 12 H 0.087 0.913 13 C -0.151 4.151 14 C 0.127 3.873 15 N -0.711 5.711 16 C 0.533 3.467 17 O -0.567 6.567 18 C -0.130 4.130 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.274 1.274 28 O -0.218 6.218 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.202 0.798 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.356 0.644 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.415 0.585 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.630 14.063 21.412 36.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 C -0.204 4.204 4 N -0.221 5.221 5 C -0.019 4.019 6 C 0.072 3.928 7 H 0.131 0.869 8 C -0.229 4.229 9 N -0.316 5.316 10 C -0.057 4.057 11 C -0.106 4.106 12 H 0.105 0.895 13 C -0.208 4.208 14 C 0.003 3.997 15 N -0.365 5.365 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.076 5.924 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.199 1.199 28 O -0.105 6.105 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.219 0.781 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.177 0.823 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.252 0.748 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.398 12.246 21.329 36.080 hybrid contribution 0.558 1.425 -0.556 1.628 sum -25.839 13.671 20.773 35.862 Atomic orbital electron populations 1.20474 0.81263 1.05685 1.04869 1.24226 0.96536 0.84010 1.06038 1.23546 0.87599 1.01626 1.07580 1.70320 1.23913 1.09780 1.18125 1.26554 0.84434 0.90466 1.00405 1.19732 0.84842 0.95094 0.93114 0.86893 1.22417 1.02081 1.03519 0.94910 1.60076 1.19887 1.11058 1.40557 1.21912 0.93379 0.93101 0.97357 1.21207 0.95426 0.95247 0.98694 0.89495 1.21893 0.99271 0.98781 1.00854 1.21371 0.92335 0.96640 0.89396 1.45739 1.40523 1.12568 1.37634 1.20042 0.80118 0.85931 0.82046 1.90689 1.68550 1.18288 1.67010 1.23379 1.01205 1.03622 0.99953 1.85561 1.48080 1.13893 1.44913 1.23246 1.26624 0.97559 1.21997 0.89935 1.26116 0.97352 0.95990 0.99608 1.70189 1.34681 1.09868 1.40050 0.84908 0.77519 0.78559 0.76968 1.18058 1.19899 1.19947 1.84371 1.18202 1.37657 1.70285 0.88775 0.89805 0.86799 0.78141 0.91171 0.89356 0.91818 0.82252 0.90290 0.92862 0.92219 0.91213 0.92300 0.92334 0.92019 0.74803 0.87322 0.87207 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.43 71.24 0.74 0.38 16 2 C -0.06 -0.81 7.39 24.79 0.18 -0.63 16 3 C -0.07 -1.07 11.80 83.40 0.98 -0.09 16 4 N -0.49 -10.12 11.28 -303.84 -3.43 -13.55 16 5 C 0.19 3.52 7.19 88.34 0.64 4.16 16 6 C 0.18 2.42 3.13 44.17 0.14 2.56 16 7 H 0.11 1.28 7.80 -2.39 -0.02 1.27 16 8 C -0.17 -1.66 9.14 71.98 0.66 -1.01 16 9 N -0.68 -9.21 6.22 -495.44 -3.08 -12.29 16 10 C 0.07 0.86 4.94 86.30 0.43 1.29 16 11 C -0.09 -1.20 2.63 -10.79 -0.03 -1.23 16 12 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 13 C -0.15 -1.85 8.84 71.98 0.64 -1.21 16 14 C 0.13 2.64 5.06 86.38 0.44 3.08 16 15 N -0.71 -17.51 5.28 -463.05 -2.45 -19.96 16 16 C 0.53 19.59 7.85 87.65 0.69 20.28 16 17 O -0.57 -26.28 15.86 -3.04 -0.05 -26.33 16 18 C -0.13 -5.17 6.16 71.23 0.44 -4.73 16 19 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 20 C -0.55 -31.35 9.50 67.95 0.65 -30.71 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.80 5.49 84.86 0.47 1.27 16 23 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 24 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 28 O -0.22 -4.11 10.77 -3.64 -0.04 -4.15 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.20 2.09 8.06 -2.91 -0.02 2.06 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.63 7.45 -2.38 -0.02 0.61 16 35 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 36 H 0.36 4.63 6.72 -89.69 -0.60 4.03 16 37 H 0.08 1.00 8.06 -2.38 -0.02 0.98 16 38 H 0.05 0.54 7.44 -2.39 -0.02 0.52 16 39 H 0.06 0.76 7.19 -2.39 -0.02 0.75 16 40 H 0.07 0.75 6.68 -2.39 -0.02 0.73 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.41 7.59 7.66 -92.71 -0.71 6.88 16 45 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 46 H 0.11 3.90 8.14 -2.39 -0.02 3.89 16 47 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -81.65 406.36 -1.17 -82.81 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.33 Total: 19.80 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 7.05 Total: -6.60 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -8.67 Total: -101.68 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.09 Total: -30.48 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -81.65 -1.17 -82.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714375063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.208 kcal (2) G-P(sol) polarization free energy of solvation -81.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds