Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30174 * 126.79902 * 2 1 4 4 O 1.20925 * 111.60250 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56886 * 359.97438 * 4 3 2 6 6 C 1.35450 * 106.44531 * 359.97438 * 5 4 3 7 7 C 1.50706 * 128.00667 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.46808 * 260.02704 * 7 6 5 9 9 C 1.46898 * 110.99697 * 180.02562 * 8 7 6 10 10 H 1.09008 * 109.47390 * 34.99548 * 9 8 7 11 11 C 1.52998 * 109.47447 * 154.99759 * 9 8 7 12 12 N 1.46495 * 109.47237 * 305.00182 * 11 9 8 13 13 C 1.34777 * 120.00178 * 179.97438 * 12 11 9 14 14 O 1.21278 * 119.99794 * 0.02562 * 13 12 11 15 15 C 1.50693 * 119.99888 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.46996 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00231 * 179.97438 * 16 15 13 18 18 H 1.08006 * 120.00044 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00096 * 180.02562 * 17 16 15 20 20 N 1.31636 * 119.99949 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00277 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46917 * 89.99965 * 21 19 17 23 23 H 1.48492 * 109.47465 * 210.00012 * 21 19 17 24 24 H 1.48506 * 109.47031 * 330.00633 * 21 19 17 25 25 C 1.53002 * 109.47064 * 275.00124 * 9 8 7 26 26 C 1.53002 * 109.47201 * 179.97438 * 25 9 8 27 27 C 1.52992 * 109.47073 * 299.99826 * 25 9 8 28 28 H 1.09005 * 109.46758 * 89.97833 * 1 2 3 29 29 H 1.09001 * 109.46799 * 209.97694 * 1 2 3 30 30 H 1.09000 * 109.47005 * 329.97981 * 1 2 3 31 31 H 1.08000 * 126.77781 * 180.02562 * 5 4 3 32 32 H 1.08994 * 109.47206 * 20.02911 * 7 6 5 33 33 H 1.09000 * 109.46990 * 140.03257 * 7 6 5 34 34 H 1.00899 * 111.00198 * 56.05100 * 8 7 6 35 35 H 1.09002 * 109.46545 * 65.00252 * 11 9 8 36 36 H 1.08999 * 109.47394 * 184.99809 * 11 9 8 37 37 H 0.96995 * 119.99930 * 359.97438 * 12 11 9 38 38 H 1.09002 * 109.47567 * 299.99941 * 15 13 12 39 39 H 1.08999 * 109.47332 * 60.00663 * 15 13 12 40 40 H 0.96996 * 119.99767 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47393 * 60.00025 * 25 9 8 42 42 H 1.09002 * 109.47401 * 300.00265 * 26 25 9 43 43 H 1.08999 * 109.46771 * 59.99834 * 26 25 9 44 44 H 1.09002 * 109.47012 * 179.97438 * 26 25 9 45 45 H 1.08997 * 109.47514 * 60.00102 * 27 25 9 46 46 H 1.09002 * 109.47299 * 179.97438 * 27 25 9 47 47 H 1.09007 * 109.47500 * 300.00287 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6025 -0.6067 0.0015 6 6 2.3540 -1.1320 0.0021 7 6 1.9592 -2.5864 0.0028 8 7 1.5989 -2.9965 -1.3611 9 6 1.2070 -4.4117 -1.3990 10 1 0.6849 -4.6690 -0.4773 11 6 0.2820 -4.6530 -2.5935 12 7 -0.8562 -3.7335 -2.5234 13 6 -1.8074 -3.7644 -3.4777 14 8 -1.7213 -4.5539 -4.3943 15 6 -2.9785 -2.8188 -3.4052 16 16 -4.0728 -3.1042 -4.8185 17 6 -5.3177 -1.9014 -4.4895 18 1 -5.2417 -1.2707 -3.6161 19 6 -6.3963 -1.7652 -5.3522 20 7 -7.3266 -0.8669 -5.1061 21 14 -6.5281 -2.8565 -6.8625 22 1 -7.2784 -4.0907 -6.5174 23 1 -7.2440 -2.1269 -7.9396 24 1 -5.1665 -3.2198 -7.3311 25 6 2.4567 -5.2834 -1.5374 26 6 2.0487 -6.7575 -1.5762 27 6 3.1896 -4.9224 -2.8309 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 4.5340 -1.1533 0.0025 32 1 2.7958 -3.1898 0.3546 33 1 1.1041 -2.7304 0.6633 34 1 2.3534 -2.8126 -2.0052 35 1 0.8315 -4.4812 -3.5190 36 1 -0.0796 -5.6811 -2.5713 37 1 -0.9253 -3.1023 -1.7901 38 1 -3.5282 -2.9914 -2.4799 39 1 -2.6173 -1.7907 -3.4269 40 1 -8.0806 -0.7720 -5.7088 41 1 3.1157 -5.1116 -0.6863 42 1 1.5267 -7.0145 -0.6544 43 1 1.3895 -6.9297 -2.4270 44 1 2.9390 -7.3785 -1.6752 45 1 3.4804 -3.8724 -2.8029 46 1 4.0802 -5.5431 -2.9293 47 1 2.5306 -5.0943 -3.6820 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715527282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = 12.634179 kcal Electronic energy + Delta-G solvation = -27404.610113 eV Core-core repulsion = 23523.689579 eV Total energy + Delta-G solvation = -3880.920534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.20406 -39.73061 -38.44328 -35.86518 -34.00401 -33.77360 -32.40489 -31.87201 -29.99317 -28.89017 -27.82873 -27.72510 -25.68515 -25.42628 -23.54141 -21.77389 -21.58177 -20.41897 -19.74099 -17.92313 -17.84481 -17.67446 -16.80367 -16.28464 -15.95308 -15.71371 -14.98804 -14.92577 -14.83945 -14.59483 -14.42285 -13.90218 -13.60758 -13.51106 -13.46338 -13.15911 -13.05488 -12.92066 -12.76764 -12.69530 -12.43429 -12.33431 -12.17386 -11.67765 -11.56339 -11.34643 -11.24290 -11.20360 -10.98088 -10.89779 -10.55556 -10.10791 -9.84594 -9.82666 -9.43610 -8.97558 -8.86320 -8.76181 -8.45158 -6.87153 -6.25793 -3.96764 1.16585 1.91424 2.83922 2.94322 3.09369 3.34584 3.39066 3.53266 3.66852 3.77844 4.00113 4.22999 4.32099 4.35130 4.36587 4.43448 4.56454 4.75144 4.81930 4.86838 4.97176 5.00536 5.13379 5.14308 5.20734 5.27765 5.30704 5.37263 5.39819 5.45212 5.49990 5.54732 5.57667 5.58373 5.65623 5.77294 5.83573 5.88245 5.95066 5.95694 6.08726 6.48953 6.68442 6.92406 7.80354 7.97497 8.02021 8.45063 8.62755 9.20692 10.83544 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.002790 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.266686 B =10032.022029 C =12229.843613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.040 3.960 3 N -0.369 5.369 4 O 0.096 5.904 5 C -0.058 4.058 6 C -0.199 4.199 7 C 0.137 3.863 8 N -0.678 5.678 9 C 0.079 3.921 10 H 0.087 0.913 11 C 0.131 3.869 12 N -0.722 5.722 13 C 0.528 3.472 14 O -0.527 6.527 15 C -0.122 4.122 16 S -0.144 6.144 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.882 5.882 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.235 1.235 25 C -0.120 4.120 26 C -0.150 4.150 27 C -0.156 4.156 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.212 0.788 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.347 0.653 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.403 0.597 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.270 0.730 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.881 -6.364 14.368 30.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 N -0.075 5.075 4 O 0.033 5.967 5 C -0.140 4.140 6 C -0.203 4.203 7 C 0.008 3.992 8 N -0.311 5.311 9 C -0.031 4.031 10 H 0.105 0.895 11 C 0.006 3.994 12 N -0.376 5.376 13 C 0.314 3.686 14 O -0.402 6.402 15 C -0.273 4.273 16 S 0.083 5.917 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.141 4.141 26 C -0.208 4.208 27 C -0.213 4.213 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.229 0.771 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.238 0.762 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.998 -6.020 12.834 28.738 hybrid contribution 0.522 -0.340 0.901 1.095 sum 25.520 -6.360 13.735 29.671 Atomic orbital electron populations 1.20190 0.85545 1.03493 1.04160 1.23556 0.99246 0.87948 1.01152 1.73898 0.89326 1.24243 1.20016 1.84841 1.21789 1.22748 1.67346 1.25799 1.00550 0.84115 1.03575 1.21153 0.92126 0.97427 1.09584 1.20123 1.00074 0.87724 0.91311 1.60583 1.45341 1.18317 1.06865 1.21909 0.95009 0.86740 0.99431 0.89477 1.21359 0.86685 0.93618 0.97705 1.45737 1.23421 1.40035 1.28413 1.20242 0.82956 0.83898 0.81492 1.90686 1.76980 1.39003 1.33534 1.23255 0.97524 1.01468 1.05020 1.84767 1.24680 1.51852 1.30426 1.22329 1.07977 1.21654 1.14783 0.89422 1.24713 0.94246 0.94783 0.97596 1.69943 1.10956 1.33156 1.37781 0.86736 0.81209 0.81025 0.82889 1.19248 1.20008 1.15899 1.21703 0.97070 0.96526 0.98784 1.21879 1.01712 0.94702 1.02539 1.21965 1.00676 1.01039 0.97652 0.89387 0.90000 0.90764 0.77149 0.93741 0.89415 0.83113 0.91423 0.91187 0.76221 0.88718 0.88584 0.91989 0.91078 0.92464 0.91683 0.92548 0.92749 0.92292 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.39 36.01 0.37 -0.29 16 2 C 0.04 0.40 7.33 -82.10 -0.60 -0.20 16 3 N -0.37 -4.27 12.07 33.42 0.40 -3.87 16 4 O 0.10 0.92 11.20 17.19 0.19 1.11 16 5 C -0.06 -0.36 12.26 29.74 0.36 0.00 16 6 C -0.20 -1.45 5.84 -104.42 -0.61 -2.06 16 7 C 0.14 0.74 5.97 -4.97 -0.03 0.71 16 8 N -0.68 -4.33 5.68 -107.99 -0.61 -4.94 16 9 C 0.08 0.51 2.02 -67.71 -0.14 0.37 16 10 H 0.09 0.53 7.80 -51.92 -0.40 0.12 16 11 C 0.13 1.33 4.65 -4.05 -0.02 1.31 16 12 N -0.72 -8.95 5.39 -60.30 -0.32 -9.27 16 13 C 0.53 9.34 7.85 -10.99 -0.09 9.26 16 14 O -0.53 -11.33 15.86 5.56 0.09 -11.24 16 15 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 16 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 17 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 18 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.81 13.97 55.49 0.78 -26.03 16 21 Si 0.86 21.97 27.74 -169.99 -4.71 17.25 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 25 C -0.12 -0.63 2.82 -90.62 -0.26 -0.89 16 26 C -0.15 -0.87 8.84 37.16 0.33 -0.54 16 27 C -0.16 -0.89 8.58 37.15 0.32 -0.57 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.56 7.99 -51.93 -0.41 0.15 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 32 H 0.04 0.18 7.44 -51.93 -0.39 -0.21 16 33 H 0.09 0.47 7.90 -51.93 -0.41 0.06 16 34 H 0.35 2.27 6.27 -39.29 -0.25 2.03 16 35 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 36 H 0.07 0.76 6.71 -51.93 -0.35 0.41 16 37 H 0.40 4.17 8.14 -40.82 -0.33 3.84 16 38 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 39 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.07 0.32 7.45 -51.93 -0.39 -0.07 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 0.28 6.26 -51.93 -0.32 -0.04 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.49 6.32 -51.92 -0.33 0.16 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -35.43 396.03 -7.34 -42.77 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.20 Total: 1.04 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 0.08 Total: -7.11 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.24 Total: -44.12 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.28 Total: -10.13 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.43 -7.34 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715527282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.402 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds