Wall clock time and date at job start Sat Apr 11 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 110.27430 * 2 1 4 4 C 1.34784 * 119.99512 * 57.91552 * 3 2 1 5 5 O 1.21274 * 120.00391 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99484 * 179.97438 * 4 3 2 7 7 S 1.81001 * 109.46906 * 179.97438 * 6 4 3 8 8 C 1.76196 * 99.99824 * 179.97438 * 7 6 4 9 9 H 1.08000 * 120.00437 * 359.97438 * 8 7 6 10 10 C 1.38801 * 120.00045 * 179.97438 * 8 7 6 11 11 N 1.31637 * 119.99640 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00331 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46907 * 90.00301 * 12 10 8 14 14 H 1.48496 * 109.47029 * 210.00150 * 12 10 8 15 15 H 1.48497 * 109.46851 * 330.00172 * 12 10 8 16 16 C 1.54591 * 110.30641 * 122.19875 * 2 1 3 17 17 C 1.54940 * 102.92387 * 140.87266 * 16 2 1 18 18 N 1.48538 * 103.22582 * 322.58465 * 17 16 2 19 19 C 1.46896 * 111.00103 * 159.72017 * 18 17 16 20 20 H 1.08995 * 109.40052 * 66.72183 * 19 18 17 21 21 C 1.53074 * 109.40157 * 306.97577 * 19 18 17 22 22 C 1.53338 * 108.43528 * 190.98670 * 21 19 18 23 23 C 1.52924 * 108.66415 * 67.53642 * 22 21 19 24 24 N 1.45750 * 110.48116 * 309.22627 * 23 22 21 25 25 C 1.33355 * 124.11182 * 19.09969 * 24 23 22 26 26 O 1.21279 * 118.24410 * 177.75354 * 25 24 23 27 27 C 1.47906 * 105.81812 * 39.20585 * 18 17 16 28 28 H 1.08994 * 109.47033 * 182.08315 * 1 2 3 29 29 H 1.08991 * 109.46758 * 302.08976 * 1 2 3 30 30 H 1.09004 * 109.46922 * 62.08748 * 1 2 3 31 31 H 0.96992 * 120.00290 * 237.90717 * 3 2 1 32 32 H 1.09001 * 109.47285 * 299.99935 * 6 4 3 33 33 H 1.08996 * 109.47161 * 59.99760 * 6 4 3 34 34 H 0.97001 * 119.99527 * 179.97438 * 11 10 8 35 35 H 1.08997 * 110.72307 * 259.22743 * 16 2 1 36 36 H 1.09007 * 110.72717 * 22.51599 * 16 2 1 37 37 H 1.08994 * 110.66636 * 81.01650 * 17 16 2 38 38 H 1.09000 * 110.67077 * 204.15239 * 17 16 2 39 39 H 1.08997 * 109.67356 * 310.70767 * 21 19 18 40 40 H 1.09000 * 109.67016 * 71.23524 * 21 19 18 41 41 H 1.08995 * 109.62617 * 307.77277 * 22 21 19 42 42 H 1.09001 * 109.72943 * 187.35702 * 22 21 19 43 43 H 1.09001 * 109.29974 * 188.91657 * 23 22 21 44 44 H 1.08991 * 109.30208 * 69.53963 * 23 22 21 45 45 H 0.97008 * 117.94619 * 199.07787 * 24 23 22 46 46 H 1.08999 * 109.91706 * 215.31766 * 27 18 17 47 47 H 1.08993 * 109.91778 * 94.02324 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0377 1.3742 0.0000 4 6 1.6896 2.2211 0.9890 5 8 0.9558 1.8457 1.8786 6 6 2.2122 3.6346 0.9893 7 16 1.5703 4.5149 2.4347 8 6 2.3183 6.0913 2.1899 9 1 2.9547 6.2600 1.3339 10 6 2.0896 7.1164 3.0974 11 7 1.3143 6.9106 4.1411 12 14 2.8820 8.7880 2.8376 13 1 1.9800 9.6422 2.0240 14 1 3.1202 9.4327 4.1539 15 1 4.1755 8.6176 2.1284 16 6 2.0666 -0.7726 1.2269 17 6 3.2855 -1.5355 0.6500 18 7 2.8313 -1.9230 -0.7101 19 6 3.9751 -2.2248 -1.5810 20 1 4.4777 -3.1224 -1.2206 21 6 4.9564 -1.0503 -1.5569 22 6 5.9910 -1.2599 -2.6691 23 6 5.2891 -1.1286 -4.0215 24 7 4.1018 -1.9729 -4.0639 25 6 3.4878 -2.4548 -2.9827 26 8 2.4818 -3.1137 -3.1398 27 6 2.0645 -0.7672 -1.2236 28 1 -0.3633 -1.0269 0.0374 29 1 -0.3632 0.5459 0.8706 30 1 -0.3633 0.4811 -0.9082 31 1 2.6244 1.6745 -0.7116 32 1 3.3015 3.6192 1.0270 33 1 1.8873 4.1423 0.0812 34 1 1.1548 7.6269 4.7755 35 1 2.3791 -0.0826 2.0106 36 1 1.3172 -1.4699 1.6016 37 1 4.1563 -0.8825 0.5933 38 1 3.5046 -2.4196 1.2488 39 1 4.4176 -0.1184 -1.7282 40 1 5.4590 -1.0118 -0.5905 41 1 6.4287 -2.2540 -2.5793 42 1 6.7748 -0.5066 -2.5893 43 1 5.9743 -1.4302 -4.8137 44 1 4.9983 -0.0898 -4.1770 45 1 3.7350 -2.1981 -4.9333 46 1 1.2327 -1.1158 -1.8357 47 1 2.7162 -0.1209 -1.8115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716834558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:04 Heat of formation + Delta-G solvation = -56.631158 kcal Electronic energy + Delta-G solvation = -28370.172610 eV Core-core repulsion = 24486.248506 eV Total energy + Delta-G solvation = -3883.924104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36888 -39.90653 -38.11699 -36.78048 -34.89646 -32.75338 -32.44916 -31.37966 -30.08715 -28.72939 -28.31857 -26.14794 -25.49930 -24.59509 -22.99380 -21.70585 -21.13925 -19.45325 -19.19814 -17.92152 -17.77756 -16.93936 -16.53021 -16.21441 -15.86780 -15.30186 -14.99418 -14.88533 -14.82346 -14.59630 -14.41049 -14.17492 -13.96703 -13.63686 -13.18794 -13.12227 -12.80422 -12.62237 -12.41461 -12.35124 -12.04829 -11.87195 -11.80368 -11.74486 -11.51480 -11.34192 -11.09067 -11.04503 -10.97061 -10.78524 -10.78089 -10.00854 -9.83570 -9.49243 -9.25067 -9.09150 -8.89348 -8.65945 -8.25728 -6.51902 -6.23956 -3.94378 2.26865 2.79687 2.98478 3.07577 3.20208 3.25450 3.28916 3.55402 3.76729 4.03391 4.13670 4.18163 4.18812 4.30371 4.40036 4.63590 4.69190 4.82044 4.86005 4.99495 5.03497 5.11136 5.11994 5.19269 5.21626 5.29422 5.34113 5.45458 5.60091 5.60786 5.64800 5.77206 5.85263 5.86901 5.89131 6.01529 6.10489 6.17263 6.31859 6.38412 6.45500 6.57299 6.80576 6.92786 7.57061 7.70099 7.88626 8.32693 8.61523 9.21418 10.83410 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.002529 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.157521 B =11070.313376 C =12023.559016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 N -0.732 5.732 4 C 0.534 3.466 5 O -0.509 6.509 6 C -0.154 4.154 7 S -0.057 6.057 8 C -0.536 4.536 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C -0.122 4.122 17 C 0.028 3.972 18 N -0.487 5.487 19 C 0.066 3.934 20 H 0.116 0.884 21 C -0.164 4.164 22 C -0.133 4.133 23 C 0.108 3.892 24 N -0.723 5.723 25 C 0.521 3.479 26 O -0.530 6.530 27 C 0.031 3.969 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.393 0.607 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.268 0.732 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.400 0.600 46 H 0.095 0.905 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.789 -18.120 -16.517 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.084 3.916 3 N -0.387 5.387 4 C 0.321 3.679 5 O -0.383 6.383 6 C -0.305 4.305 7 S 0.169 5.831 8 C -0.685 4.685 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.502 5.502 12 Si 0.745 3.255 13 H -0.203 1.203 14 H -0.207 1.207 15 H -0.197 1.197 16 C -0.161 4.161 17 C -0.099 4.099 18 N -0.211 5.211 19 C -0.046 4.046 20 H 0.134 0.866 21 C -0.203 4.203 22 C -0.171 4.171 23 C -0.017 4.017 24 N -0.377 5.377 25 C 0.307 3.693 26 O -0.405 6.405 27 C -0.097 4.097 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.227 0.773 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.235 0.765 46 H 0.113 0.887 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.699 -19.458 -14.695 25.889 hybrid contribution 2.260 2.429 -2.091 3.922 sum 10.959 -17.029 -16.787 26.304 Atomic orbital electron populations 1.22198 0.93132 1.02636 1.03677 1.20994 0.94977 0.81256 0.94371 1.46266 1.52651 1.11491 1.28253 1.20239 0.80164 0.86552 0.80985 1.90667 1.34836 1.77201 1.35563 1.23551 1.04232 0.95234 1.07496 1.85389 1.64402 1.08085 1.25202 1.22863 1.34934 0.97215 1.13441 0.91016 1.24992 0.95115 0.99012 0.94458 1.70019 1.35075 1.33301 1.11844 0.86174 0.79402 0.82184 0.77776 1.20270 1.20737 1.19728 1.22873 0.97065 0.98770 0.97423 1.23451 0.97689 0.99652 0.89128 1.64980 1.18272 1.36145 1.01698 1.21788 0.91719 1.00066 0.91068 0.86634 1.22465 0.97854 0.99550 1.00459 1.21824 0.98276 1.03660 0.93344 1.21409 0.86708 0.94873 0.98663 1.45530 1.30381 1.52602 1.09224 1.19928 0.83542 0.79143 0.86723 1.90779 1.24426 1.38883 1.86371 1.23295 0.98766 0.91149 0.96470 0.91598 0.89512 0.92836 0.77315 0.89472 0.89415 0.92167 0.89413 0.89731 0.92653 0.89495 0.90534 0.89653 0.90717 0.89397 0.90367 0.91536 0.76452 0.88696 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.15 37.16 0.30 -1.82 16 2 C 0.17 2.09 0.94 -130.46 -0.12 1.96 16 3 N -0.73 -9.42 5.15 -46.35 -0.24 -9.66 16 4 C 0.53 9.43 7.04 -10.98 -0.08 9.35 16 5 O -0.51 -10.74 12.75 5.56 0.07 -10.67 16 6 C -0.15 -3.01 6.16 36.01 0.22 -2.78 16 7 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 8 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 9 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 10 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 11 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 12 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 16 C -0.12 -1.50 5.85 -24.87 -0.15 -1.65 16 17 C 0.03 0.27 6.34 -1.89 -0.01 0.26 16 18 N -0.49 -5.02 5.12 -224.15 -1.15 -6.16 16 19 C 0.07 0.55 2.62 -69.08 -0.18 0.37 16 20 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.16 -0.98 4.30 -26.52 -0.11 -1.09 16 22 C -0.13 -0.52 6.02 -26.59 -0.16 -0.68 16 23 C 0.11 0.41 7.17 -4.48 -0.03 0.38 16 24 N -0.72 -4.72 5.45 -61.39 -0.33 -5.05 16 25 C 0.52 5.11 6.33 -11.87 -0.08 5.03 16 26 O -0.53 -7.50 17.26 5.56 0.10 -7.40 16 27 C 0.03 0.33 4.84 -2.75 -0.01 0.32 16 28 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 29 H 0.09 1.42 6.03 -51.93 -0.31 1.11 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.39 4.02 8.09 -40.82 -0.33 3.69 16 32 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 33 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.09 1.28 6.82 -51.93 -0.35 0.92 16 36 H 0.08 1.05 7.84 -51.92 -0.41 0.64 16 37 H 0.06 0.49 5.65 -51.93 -0.29 0.20 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.51 5.96 -51.93 -0.31 0.20 16 40 H 0.08 0.49 6.63 -51.93 -0.34 0.15 16 41 H 0.07 0.28 8.12 -51.93 -0.42 -0.15 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.40 2.32 8.80 -40.82 -0.36 1.96 16 46 H 0.09 1.16 7.60 -51.93 -0.39 0.76 16 47 H 0.05 0.48 4.96 -51.93 -0.26 0.22 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -35.55 377.01 -9.72 -45.27 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.13 Total: 3.93 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -0.21 Total: -3.14 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.99 Total: -46.06 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.17 Total: -18.07 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.55 -9.72 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716834558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.363 kcal (2) G-P(sol) polarization free energy of solvation -35.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds