Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 110.27430 * 2 1 4 4 C 1.34784 * 119.99512 * 57.91552 * 3 2 1 5 5 O 1.21274 * 120.00391 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99484 * 179.97438 * 4 3 2 7 7 S 1.81001 * 109.46906 * 179.97438 * 6 4 3 8 8 C 1.76196 * 99.99824 * 179.97438 * 7 6 4 9 9 H 1.08000 * 120.00437 * 359.97438 * 8 7 6 10 10 C 1.38801 * 120.00045 * 179.97438 * 8 7 6 11 11 N 1.31637 * 119.99640 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00331 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46907 * 90.00301 * 12 10 8 14 14 H 1.48496 * 109.47029 * 210.00150 * 12 10 8 15 15 H 1.48497 * 109.46851 * 330.00172 * 12 10 8 16 16 C 1.54591 * 110.30641 * 122.19875 * 2 1 3 17 17 C 1.54940 * 102.92387 * 140.87266 * 16 2 1 18 18 N 1.48538 * 103.22582 * 322.58465 * 17 16 2 19 19 C 1.46896 * 111.00103 * 159.72017 * 18 17 16 20 20 H 1.08995 * 109.40052 * 66.72183 * 19 18 17 21 21 C 1.53074 * 109.40157 * 306.97577 * 19 18 17 22 22 C 1.53338 * 108.43528 * 190.98670 * 21 19 18 23 23 C 1.52924 * 108.66415 * 67.53642 * 22 21 19 24 24 N 1.45750 * 110.48116 * 309.22627 * 23 22 21 25 25 C 1.33355 * 124.11182 * 19.09969 * 24 23 22 26 26 O 1.21279 * 118.24410 * 177.75354 * 25 24 23 27 27 C 1.47906 * 105.81812 * 39.20585 * 18 17 16 28 28 H 1.08994 * 109.47033 * 182.08315 * 1 2 3 29 29 H 1.08991 * 109.46758 * 302.08976 * 1 2 3 30 30 H 1.09004 * 109.46922 * 62.08748 * 1 2 3 31 31 H 0.96992 * 120.00290 * 237.90717 * 3 2 1 32 32 H 1.09001 * 109.47285 * 299.99935 * 6 4 3 33 33 H 1.08996 * 109.47161 * 59.99760 * 6 4 3 34 34 H 0.97001 * 119.99527 * 179.97438 * 11 10 8 35 35 H 1.08997 * 110.72307 * 259.22743 * 16 2 1 36 36 H 1.09007 * 110.72717 * 22.51599 * 16 2 1 37 37 H 1.08994 * 110.66636 * 81.01650 * 17 16 2 38 38 H 1.09000 * 110.67077 * 204.15239 * 17 16 2 39 39 H 1.08997 * 109.67356 * 310.70767 * 21 19 18 40 40 H 1.09000 * 109.67016 * 71.23524 * 21 19 18 41 41 H 1.08995 * 109.62617 * 307.77277 * 22 21 19 42 42 H 1.09001 * 109.72943 * 187.35702 * 22 21 19 43 43 H 1.09001 * 109.29974 * 188.91657 * 23 22 21 44 44 H 1.08991 * 109.30208 * 69.53963 * 23 22 21 45 45 H 0.97008 * 117.94619 * 199.07787 * 24 23 22 46 46 H 1.08999 * 109.91706 * 215.31766 * 27 18 17 47 47 H 1.08993 * 109.91778 * 94.02324 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0377 1.3742 0.0000 4 6 1.6896 2.2211 0.9890 5 8 0.9558 1.8457 1.8786 6 6 2.2122 3.6346 0.9893 7 16 1.5703 4.5149 2.4347 8 6 2.3183 6.0913 2.1899 9 1 2.9547 6.2600 1.3339 10 6 2.0896 7.1164 3.0974 11 7 1.3143 6.9106 4.1411 12 14 2.8820 8.7880 2.8376 13 1 1.9800 9.6422 2.0240 14 1 3.1202 9.4327 4.1539 15 1 4.1755 8.6176 2.1284 16 6 2.0666 -0.7726 1.2269 17 6 3.2855 -1.5355 0.6500 18 7 2.8313 -1.9230 -0.7101 19 6 3.9751 -2.2248 -1.5810 20 1 4.4777 -3.1224 -1.2206 21 6 4.9564 -1.0503 -1.5569 22 6 5.9910 -1.2599 -2.6691 23 6 5.2891 -1.1286 -4.0215 24 7 4.1018 -1.9729 -4.0639 25 6 3.4878 -2.4548 -2.9827 26 8 2.4818 -3.1137 -3.1398 27 6 2.0645 -0.7672 -1.2236 28 1 -0.3633 -1.0269 0.0374 29 1 -0.3632 0.5459 0.8706 30 1 -0.3633 0.4811 -0.9082 31 1 2.6244 1.6745 -0.7116 32 1 3.3015 3.6192 1.0270 33 1 1.8873 4.1423 0.0812 34 1 1.1548 7.6269 4.7755 35 1 2.3791 -0.0826 2.0106 36 1 1.3172 -1.4699 1.6016 37 1 4.1563 -0.8825 0.5933 38 1 3.5046 -2.4196 1.2488 39 1 4.4176 -0.1184 -1.7282 40 1 5.4590 -1.0118 -0.5905 41 1 6.4287 -2.2540 -2.5793 42 1 6.7748 -0.5066 -2.5893 43 1 5.9743 -1.4302 -4.8137 44 1 4.9983 -0.0898 -4.1770 45 1 3.7350 -2.1981 -4.9333 46 1 1.2327 -1.1158 -1.8357 47 1 2.7162 -0.1209 -1.8115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716834558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = -85.371712 kcal Electronic energy + Delta-G solvation = -28371.418894 eV Core-core repulsion = 24486.248506 eV Total energy + Delta-G solvation = -3885.170388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.14934 -40.98178 -39.20360 -37.41975 -35.88962 -34.57505 -33.69013 -32.25915 -30.99663 -29.97625 -29.19276 -27.64856 -26.96524 -25.28634 -23.51127 -22.69834 -22.13363 -20.63621 -19.93069 -19.68823 -18.47226 -17.94401 -17.58367 -17.15875 -16.87167 -16.68699 -16.39448 -16.20397 -15.81107 -15.52650 -15.18898 -15.05845 -14.91644 -14.69102 -14.51607 -14.20300 -14.06917 -13.87406 -13.39938 -13.27899 -13.15053 -13.01446 -12.89505 -12.75001 -12.57063 -12.49455 -12.34606 -12.25026 -12.07859 -11.96706 -11.72558 -11.66564 -11.13609 -10.74952 -10.67618 -10.25219 -10.11300 -10.03791 -9.40129 -8.64490 -8.33957 -6.11214 1.27468 1.42702 1.47504 1.55146 1.57921 1.65500 2.19955 2.25762 2.29227 2.92778 3.00318 3.29782 3.34869 3.47951 3.67468 3.74946 3.78529 3.87054 3.98096 4.00552 4.17930 4.26861 4.30276 4.33953 4.42359 4.51515 4.54079 4.67975 4.69965 4.75235 4.78514 4.82801 4.90701 4.98455 5.05520 5.08782 5.13914 5.25489 5.28690 5.42495 5.45612 5.72135 5.77642 5.93123 6.20390 6.34185 6.52705 7.07599 7.23661 7.28524 8.75071 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.002529 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.157521 B =11070.313376 C =12023.559016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 N -0.706 5.706 4 C 0.538 3.462 5 O -0.548 6.548 6 C -0.130 4.130 7 S -0.147 6.147 8 C -0.546 4.546 9 H 0.082 0.918 10 C 0.013 3.987 11 N -0.912 5.912 12 Si 0.997 3.003 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.257 1.257 16 C -0.123 4.123 17 C 0.039 3.961 18 N -0.503 5.503 19 C 0.065 3.935 20 H 0.122 0.878 21 C -0.160 4.160 22 C -0.129 4.129 23 C 0.102 3.898 24 N -0.713 5.713 25 C 0.518 3.482 26 O -0.584 6.584 27 C 0.045 3.955 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.411 0.589 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.271 0.729 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.403 0.597 46 H 0.080 0.920 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.845 -17.649 -18.936 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.085 3.915 3 N -0.361 5.361 4 C 0.324 3.676 5 O -0.425 6.425 6 C -0.281 4.281 7 S 0.080 5.920 8 C -0.694 4.694 9 H 0.100 0.900 10 C -0.192 4.192 11 N -0.548 5.548 12 Si 0.819 3.181 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.180 1.180 16 C -0.162 4.162 17 C -0.088 4.088 18 N -0.227 5.227 19 C -0.046 4.046 20 H 0.140 0.860 21 C -0.199 4.199 22 C -0.167 4.167 23 C -0.021 4.021 24 N -0.365 5.365 25 C 0.304 3.696 26 O -0.463 6.463 27 C -0.083 4.083 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.248 0.752 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.239 0.761 46 H 0.098 0.902 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.820 -18.988 -17.182 28.204 hybrid contribution 1.326 2.161 -1.434 2.912 sum 13.146 -16.827 -18.616 28.329 Atomic orbital electron populations 1.22140 0.94188 1.02670 1.02372 1.21044 0.94249 0.80707 0.95535 1.45959 1.51778 1.11141 1.27195 1.19959 0.79849 0.86344 0.81459 1.90675 1.36737 1.77694 1.37436 1.23382 1.05105 0.95451 1.04172 1.85577 1.66080 1.09846 1.30461 1.23207 1.34885 0.97471 1.13807 0.89954 1.26119 0.95548 1.03569 0.93945 1.70187 1.36804 1.34773 1.13047 0.84969 0.78843 0.76368 0.77904 1.19452 1.20401 1.18046 1.22797 0.98217 0.98447 0.96783 1.23391 0.96660 0.99974 0.88792 1.64917 1.19664 1.35914 1.02212 1.21844 0.91436 1.01513 0.89850 0.85992 1.22434 0.97688 0.97947 1.01804 1.21846 0.97986 1.04619 0.92248 1.21685 0.85948 0.94859 0.99629 1.45571 1.30631 1.51661 1.08621 1.20204 0.82987 0.78609 0.87814 1.90758 1.26896 1.41524 1.87162 1.23078 0.98732 0.91258 0.95244 0.90827 0.92661 0.92276 0.75216 0.87290 0.87637 0.92046 0.91784 0.90475 0.91218 0.88485 0.90872 0.88999 0.90290 0.87498 0.87967 0.90576 0.76093 0.90182 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 8.15 71.98 0.59 -3.66 16 2 C 0.17 4.07 0.94 4.48 0.00 4.07 16 3 N -0.71 -17.12 5.15 -418.95 -2.16 -19.28 16 4 C 0.54 18.78 7.04 87.66 0.62 19.40 16 5 O -0.55 -23.89 12.75 -3.01 -0.04 -23.93 16 6 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 7 S -0.15 -7.96 20.57 -56.49 -1.16 -9.13 16 8 C -0.55 -30.61 9.50 67.95 0.65 -29.96 16 9 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 10 C 0.01 0.73 5.49 84.86 0.47 1.19 16 11 N -0.91 -55.57 13.22 21.65 0.29 -55.28 16 12 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 13 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 14 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 15 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 16 C -0.12 -3.02 5.85 31.80 0.19 -2.83 16 17 C 0.04 0.69 6.34 86.65 0.55 1.24 16 18 N -0.50 -9.63 5.12 -863.06 -4.42 -14.05 16 19 C 0.07 0.95 2.62 44.03 0.12 1.06 16 20 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 21 C -0.16 -1.36 4.30 30.73 0.13 -1.23 16 22 C -0.13 -0.49 6.02 30.68 0.18 -0.30 16 23 C 0.10 0.40 7.17 86.50 0.62 1.02 16 24 N -0.71 -7.63 5.45 -467.33 -2.55 -10.18 16 25 C 0.52 9.37 6.33 87.71 0.56 9.92 16 26 O -0.58 -16.42 17.26 -3.03 -0.05 -16.47 16 27 C 0.05 0.90 4.84 86.45 0.42 1.31 16 28 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 29 H 0.05 1.89 6.03 -2.39 -0.01 1.87 16 30 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.41 7.16 8.09 -92.71 -0.75 6.41 16 32 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 34 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.06 1.89 6.82 -2.39 -0.02 1.88 16 36 H 0.08 1.97 7.84 -2.38 -0.02 1.95 16 37 H 0.07 1.05 5.65 -2.39 -0.01 1.03 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 0.69 5.96 -2.39 -0.01 0.67 16 40 H 0.09 0.71 6.63 -2.39 -0.02 0.69 16 41 H 0.08 0.28 8.12 -2.39 -0.02 0.26 16 42 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.40 3.93 8.80 -92.70 -0.82 3.11 16 46 H 0.08 1.89 7.60 -2.39 -0.02 1.87 16 47 H 0.07 1.10 4.96 -2.39 -0.01 1.09 16 Total: -1.00 -80.95 377.01 -3.10 -84.05 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.56 Total: 22.57 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.52 Total: -3.25 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -8.84 Total: -98.79 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.09 Total: -40.40 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.13 kcal Total: -80.95 -3.10 -84.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716834558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.317 kcal (2) G-P(sol) polarization free energy of solvation -80.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds