Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 110.27323 * 2 1 4 4 C 1.34781 * 119.99892 * 300.70607 * 3 2 1 5 5 O 1.21277 * 120.00129 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99566 * 180.27225 * 4 3 2 7 7 S 1.81005 * 109.46845 * 179.72278 * 6 4 3 8 8 C 1.76198 * 99.99927 * 180.02562 * 7 6 4 9 9 H 1.08006 * 120.00205 * 0.02562 * 8 7 6 10 10 C 1.38798 * 119.99859 * 179.97438 * 8 7 6 11 11 N 1.31628 * 120.00196 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47426 * 60.00008 * 12 10 8 14 14 H 1.48503 * 109.47404 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46962 * 300.00158 * 12 10 8 16 16 C 1.54592 * 110.31035 * 237.91621 * 2 1 3 17 17 C 1.55200 * 102.80187 * 219.04657 * 16 2 1 18 18 N 1.48532 * 103.23846 * 37.43047 * 17 16 2 19 19 C 1.46900 * 111.00273 * 200.25737 * 18 17 16 20 20 H 1.09006 * 109.39741 * 46.82064 * 19 18 17 21 21 C 1.53062 * 109.40317 * 166.65027 * 19 18 17 22 22 C 1.53291 * 108.44740 * 169.11333 * 21 19 18 23 23 C 1.52921 * 108.61240 * 292.36384 * 22 21 19 24 24 N 1.45756 * 110.48601 * 50.76546 * 23 22 21 25 25 C 1.33354 * 124.10970 * 340.92545 * 24 23 22 26 26 O 1.21279 * 118.25111 * 182.22336 * 25 24 23 27 27 C 1.47906 * 105.81734 * 320.77227 * 18 17 16 28 28 H 1.08995 * 109.47502 * 59.29721 * 1 2 3 29 29 H 1.08997 * 109.46941 * 179.30138 * 1 2 3 30 30 H 1.09001 * 109.47079 * 299.29159 * 1 2 3 31 31 H 0.97000 * 119.99578 * 120.70295 * 3 2 1 32 32 H 1.08999 * 109.47704 * 299.72138 * 6 4 3 33 33 H 1.09001 * 109.47372 * 59.72855 * 6 4 3 34 34 H 0.96995 * 120.00086 * 180.02562 * 11 10 8 35 35 H 1.09001 * 110.72073 * 337.37872 * 16 2 1 36 36 H 1.09001 * 110.72763 * 100.66154 * 16 2 1 37 37 H 1.09001 * 110.67901 * 278.98054 * 17 16 2 38 38 H 1.09004 * 110.78468 * 155.92734 * 17 16 2 39 39 H 1.08995 * 109.67817 * 288.76818 * 21 19 18 40 40 H 1.09006 * 109.67111 * 49.29224 * 21 19 18 41 41 H 1.08997 * 109.62597 * 172.63390 * 22 21 19 42 42 H 1.09004 * 109.78312 * 52.18519 * 22 21 19 43 43 H 1.08994 * 109.30170 * 290.45538 * 23 22 21 44 44 H 1.08995 * 109.30526 * 171.07623 * 23 22 21 45 45 H 0.97006 * 117.94957 * 160.95080 * 24 23 22 46 46 H 1.09002 * 109.91118 * 265.97177 * 27 18 17 47 47 H 1.09007 * 110.07789 * 144.77405 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.7120 2.2130 -1.0036 5 8 0.9992 1.8299 -1.9069 6 6 2.2392 3.6247 -1.0067 7 16 1.6362 4.4906 -2.4774 8 6 2.3831 6.0674 -2.2318 9 1 2.9987 6.2439 -1.3620 10 6 2.1812 7.0826 -3.1566 11 7 1.4315 6.8675 -4.2168 12 14 2.9736 8.7541 -2.8966 13 1 4.4499 8.6001 -2.8494 14 1 2.6052 9.6563 -4.0170 15 1 2.4954 9.3348 -1.6162 16 6 2.0665 -0.7701 -1.2284 17 6 3.2882 -1.5325 -0.6496 18 7 2.8334 -1.9215 0.7098 19 6 3.9770 -2.2223 1.5816 20 1 4.7254 -1.4362 1.4810 21 6 3.5037 -2.2908 3.0356 22 6 4.6389 -2.8687 3.8884 23 6 4.8455 -4.3329 3.4985 24 7 4.9806 -4.4617 2.0530 25 6 4.5784 -3.5382 1.1791 26 8 4.7056 -3.7733 -0.0039 27 6 2.0645 -0.7671 1.2235 28 1 -0.3634 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3633 0.5028 0.8963 31 1 2.6080 1.6806 0.7223 32 1 1.8938 4.1436 -0.1125 33 1 3.3290 3.6056 -1.0177 34 1 1.2907 7.5768 -4.8633 35 1 1.3178 -1.4679 -1.6033 36 1 2.3773 -0.0786 -2.0116 37 1 4.1581 -0.8782 -0.5917 38 1 3.5119 -2.4157 -1.2479 39 1 3.2548 -1.2900 3.3881 40 1 2.6264 -2.9339 3.1060 41 1 4.3729 -2.8053 4.9435 42 1 5.5570 -2.3094 3.7085 43 1 3.9901 -4.9192 3.8341 44 1 5.7478 -4.7100 3.9797 45 1 5.3882 -5.2701 1.7047 46 1 2.7149 -0.1204 1.8124 47 1 1.2328 -1.1145 1.8365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716834560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = -62.320490 kcal Electronic energy + Delta-G solvation = -27910.077711 eV Core-core repulsion = 24025.906899 eV Total energy + Delta-G solvation = -3884.170812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.12269 -39.93606 -38.02181 -36.85405 -34.84545 -32.81471 -32.42472 -31.39688 -30.07232 -28.64083 -28.31781 -26.35599 -25.47560 -23.87005 -23.12365 -21.79531 -20.86007 -19.52577 -19.29985 -17.86099 -17.73945 -16.98517 -16.64703 -16.21244 -15.66288 -15.41471 -14.91092 -14.81764 -14.78218 -14.58054 -14.39526 -13.92780 -13.85916 -13.67350 -13.16715 -13.12477 -12.72622 -12.66236 -12.51991 -12.34385 -12.08759 -11.86429 -11.78064 -11.73502 -11.34603 -11.21464 -11.04291 -11.03851 -10.92593 -10.76896 -10.76368 -9.99245 -9.81827 -9.47429 -9.22990 -9.05932 -8.85108 -8.70886 -8.23213 -6.49071 -6.21131 -3.91534 2.27800 2.81596 3.03001 3.11376 3.23361 3.27367 3.30488 3.60393 3.79553 4.01837 4.14835 4.20854 4.29084 4.33531 4.41936 4.67642 4.77892 4.81872 4.85363 5.02071 5.13127 5.13861 5.15396 5.19629 5.25136 5.32256 5.35954 5.41033 5.59390 5.61967 5.73079 5.82592 5.85775 5.89170 6.00658 6.11581 6.14104 6.24531 6.37067 6.42563 6.48993 6.63104 6.84155 6.94753 7.59367 7.73760 7.90655 8.35188 8.65150 9.23985 10.86186 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002172 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.546269 B =12890.322268 C =13261.491274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 N -0.732 5.732 4 C 0.534 3.466 5 O -0.509 6.509 6 C -0.154 4.154 7 S -0.058 6.058 8 C -0.536 4.536 9 H 0.071 0.929 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C -0.125 4.125 17 C 0.039 3.961 18 N -0.498 5.498 19 C 0.063 3.937 20 H 0.076 0.924 21 C -0.122 4.122 22 C -0.137 4.137 23 C 0.110 3.890 24 N -0.722 5.722 25 C 0.531 3.469 26 O -0.539 6.539 27 C 0.039 3.961 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.394 0.606 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.269 0.731 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.400 0.600 46 H 0.052 0.948 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.225 -22.261 20.871 31.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.081 3.919 3 N -0.387 5.387 4 C 0.321 3.679 5 O -0.383 6.383 6 C -0.305 4.305 7 S 0.169 5.831 8 C -0.685 4.685 9 H 0.089 0.911 10 C -0.136 4.136 11 N -0.502 5.502 12 Si 0.745 3.255 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.200 1.200 16 C -0.164 4.164 17 C -0.088 4.088 18 N -0.223 5.223 19 C -0.049 4.049 20 H 0.093 0.907 21 C -0.160 4.160 22 C -0.175 4.175 23 C -0.015 4.015 24 N -0.375 5.375 25 C 0.317 3.683 26 O -0.415 6.415 27 C -0.089 4.089 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.228 0.772 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.235 0.765 46 H 0.070 0.930 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.592 -23.212 18.638 30.120 hybrid contribution 2.424 2.110 1.727 3.648 sum 7.016 -21.101 20.365 30.153 Atomic orbital electron populations 1.22177 0.93225 1.02365 1.03696 1.21024 0.94792 0.81384 0.94687 1.46265 1.53953 1.11623 1.26860 1.20231 0.79970 0.86589 0.81153 1.90672 1.35725 1.76794 1.35135 1.23549 1.04166 0.95249 1.07538 1.85384 1.66108 1.08714 1.22896 1.22825 1.36221 0.97543 1.11882 0.91062 1.24987 0.95126 0.98993 0.94469 1.70003 1.35960 1.33678 1.10609 0.86234 0.79503 0.81862 0.77950 1.19967 1.20802 1.19962 1.22961 0.97296 0.98722 0.97376 1.23474 0.96297 0.99882 0.89130 1.64725 1.18920 1.36232 1.02408 1.21711 0.94043 0.94961 0.94186 0.90672 1.21834 0.99100 1.02938 0.92144 1.21876 0.99539 0.95082 1.00982 1.21385 1.02191 0.97564 0.80329 1.45438 1.63288 1.21816 1.06970 1.19852 0.77240 0.85503 0.85706 1.90738 1.54853 1.78796 1.17132 1.23202 0.98316 0.91079 0.96312 0.89712 0.91710 0.92784 0.77191 0.89391 0.89459 0.92125 0.89932 0.89461 0.93879 0.88106 0.90291 0.89807 0.89265 0.90851 0.91483 0.90517 0.76456 0.92957 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.14 37.15 0.30 -1.66 16 2 C 0.17 2.03 0.94 -130.47 -0.12 1.91 16 3 N -0.73 -9.63 5.15 -46.36 -0.24 -9.87 16 4 C 0.53 9.68 7.04 -10.99 -0.08 9.60 16 5 O -0.51 -11.01 12.73 5.56 0.07 -10.94 16 6 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 7 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 8 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 9 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 10 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 11 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 12 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 16 C -0.12 -1.70 5.85 -24.73 -0.14 -1.84 16 17 C 0.04 0.49 5.67 -1.76 -0.01 0.48 16 18 N -0.50 -5.17 5.07 -223.97 -1.14 -6.31 16 19 C 0.06 0.54 2.04 -69.08 -0.14 0.40 16 20 H 0.08 0.65 7.81 -51.93 -0.41 0.24 16 21 C -0.12 -0.65 4.67 -26.55 -0.12 -0.77 16 22 C -0.14 -0.45 6.02 -26.62 -0.16 -0.61 16 23 C 0.11 0.37 7.16 -4.48 -0.03 0.34 16 24 N -0.72 -4.78 5.45 -61.39 -0.33 -5.11 16 25 C 0.53 5.38 7.44 -11.87 -0.09 5.29 16 26 O -0.54 -7.66 15.16 5.56 0.08 -7.58 16 27 C 0.04 0.36 4.94 -2.75 -0.01 0.34 16 28 H 0.08 1.35 6.17 -51.93 -0.32 1.03 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.39 4.07 8.09 -40.82 -0.33 3.74 16 32 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 33 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 34 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.08 1.12 7.86 -51.93 -0.41 0.71 16 36 H 0.09 1.42 6.68 -51.93 -0.35 1.08 16 37 H 0.04 0.55 7.80 -51.93 -0.41 0.14 16 38 H 0.10 1.43 6.63 -51.93 -0.34 1.09 16 39 H 0.08 0.36 6.94 -51.93 -0.36 -0.01 16 40 H 0.08 0.48 8.13 -51.93 -0.42 0.06 16 41 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.07 0.26 8.13 -51.93 -0.42 -0.16 16 43 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 44 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 45 H 0.40 2.34 8.80 -40.82 -0.36 1.98 16 46 H 0.05 0.40 6.27 -51.93 -0.33 0.07 16 47 H 0.09 0.75 7.68 -51.93 -0.40 0.35 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -35.99 379.38 -9.88 -45.88 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.35 Total: 3.40 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -0.19 Total: -2.36 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.98 Total: -46.76 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.16 Total: -18.52 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.99 -9.88 -45.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716834560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.445 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds