Wall clock time and date at job start Sat Apr 11 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34476 * 126.16406 * 2 1 4 4 C 1.30257 * 108.69813 * 179.82670 * 3 2 1 5 5 C 1.50699 * 125.62134 * 180.19030 * 4 3 2 6 6 N 1.46895 * 109.47130 * 90.28946 * 5 4 3 7 7 C 1.46903 * 111.00097 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.46953 * 35.00287 * 7 6 5 9 9 C 1.53004 * 109.47263 * 275.00577 * 7 6 5 10 10 C 1.52998 * 109.47204 * 155.00266 * 7 6 5 11 11 H 1.09002 * 109.47270 * 295.00640 * 10 7 6 12 12 C 1.53003 * 109.47031 * 55.00051 * 10 7 6 13 13 N 1.46500 * 109.47419 * 175.00233 * 10 7 6 14 14 C 1.34771 * 120.00104 * 155.00161 * 13 10 7 15 15 O 1.21280 * 120.00425 * 359.97438 * 14 13 10 16 16 C 1.50703 * 119.99637 * 180.02562 * 14 13 10 17 17 S 1.81003 * 109.46817 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00041 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00160 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00154 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99994 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 119.99879 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47319 * 90.00297 * 22 20 18 24 24 H 1.48501 * 109.47133 * 210.00017 * 22 20 18 25 25 H 1.48499 * 109.47314 * 329.99965 * 22 20 18 26 26 O 1.33969 * 108.76055 * 0.44172 * 4 3 2 27 27 C 1.34332 * 126.16201 * 180.31489 * 2 1 3 28 28 C 1.50698 * 126.44830 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.46953 * 269.68512 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.68110 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.68740 * 1 2 3 32 32 H 1.09002 * 109.47241 * 210.29742 * 5 4 3 33 33 H 1.09011 * 109.46686 * 330.29304 * 5 4 3 34 34 H 1.00902 * 110.99798 * 56.04891 * 6 5 4 35 35 H 1.09001 * 109.46724 * 299.99439 * 9 7 6 36 36 H 1.08993 * 109.46995 * 59.99279 * 9 7 6 37 37 H 1.08997 * 109.46951 * 180.02562 * 9 7 6 38 38 H 1.08999 * 109.47135 * 300.00068 * 12 10 7 39 39 H 1.09002 * 109.47045 * 60.00503 * 12 10 7 40 40 H 1.09001 * 109.47057 * 180.02562 * 12 10 7 41 41 H 0.97002 * 119.99732 * 334.99981 * 13 10 7 42 42 H 1.08995 * 109.47384 * 299.99449 * 16 14 13 43 43 H 1.09003 * 109.47344 * 59.99999 * 16 14 13 44 44 H 0.96999 * 120.00177 * 180.02562 * 21 20 18 45 45 H 1.08992 * 109.47616 * 89.99349 * 28 27 2 46 46 H 1.08995 * 109.46981 * 210.00439 * 28 27 2 47 47 H 1.09003 * 109.46630 * 329.99461 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 0.0037 5 6 4.7480 1.5998 0.0091 6 7 5.1390 1.8864 1.3958 7 6 6.3127 2.7687 1.4403 8 1 6.2670 3.4761 0.6124 9 6 7.5865 1.9291 1.3238 10 6 6.3256 3.5339 2.7650 11 1 5.4631 4.1990 2.8089 12 6 6.2639 2.5415 3.9279 13 7 7.5561 4.3231 2.8612 14 6 7.5906 5.4260 3.6350 15 8 6.6028 5.7656 4.2514 16 6 8.8563 6.2381 3.7334 17 16 8.5857 7.6453 4.8392 18 6 10.1775 8.3976 4.7722 19 1 10.9563 7.9605 4.1649 20 6 10.4308 9.5521 5.5000 21 7 11.6199 10.1144 5.4495 22 14 9.0837 10.3086 6.5499 23 1 9.1392 9.7321 7.9173 24 1 9.2807 11.7787 6.6242 25 1 7.7602 10.0167 5.9429 26 8 3.5734 -0.6446 -0.0036 27 6 2.2997 -1.0845 -0.0060 28 6 1.8493 -2.5226 -0.0144 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3634 0.8928 -0.5089 31 1 -0.3633 -0.8872 -0.5187 32 1 5.5732 1.1093 -0.5072 33 1 4.5041 2.5325 -0.4998 34 1 5.3079 1.0333 1.9075 35 1 7.6323 1.2216 2.1518 36 1 7.5773 1.3839 0.3801 37 1 8.4574 2.5837 1.3573 38 1 5.3484 1.9544 3.8564 39 1 7.1265 1.8765 3.8841 40 1 6.2727 3.0868 4.8717 41 1 8.3461 4.0518 2.3680 42 1 9.6583 5.6145 4.1281 43 1 9.1324 6.6020 2.7438 44 1 11.7970 10.9210 5.9584 45 1 1.7410 -2.8634 -1.0440 46 1 2.5898 -3.1382 0.4962 47 1 0.8913 -2.6062 0.4987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717398823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:22 Heat of formation + Delta-G solvation = -21.617098 kcal Electronic energy + Delta-G solvation = -26401.712186 eV Core-core repulsion = 22519.306405 eV Total energy + Delta-G solvation = -3882.405781 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.71754 -39.78480 -37.99522 -35.55266 -35.04129 -33.38202 -32.42570 -31.54209 -29.88017 -29.50331 -28.52578 -27.39821 -25.60609 -24.91367 -24.19315 -22.10297 -20.95741 -20.85509 -19.88532 -17.97881 -17.31882 -17.17323 -16.55732 -16.23587 -15.88997 -15.45357 -14.99187 -14.96791 -14.79636 -14.40212 -14.33268 -13.91643 -13.77189 -13.59682 -13.47138 -13.27406 -13.17854 -13.03808 -12.84941 -12.78131 -12.60096 -12.43484 -12.42090 -12.06084 -11.88911 -11.29066 -11.25309 -11.15800 -11.00465 -10.97896 -10.79615 -10.57633 -9.84030 -9.47036 -9.08695 -9.00466 -8.96318 -8.82117 -8.47821 -6.89784 -6.27679 -3.99089 0.99483 2.17655 2.26833 2.77698 3.01744 3.25858 3.34862 3.50499 3.52748 3.65642 3.95483 4.27257 4.34831 4.39310 4.42563 4.50507 4.59909 4.75318 4.76222 4.82465 4.86616 4.87105 5.10273 5.11522 5.14175 5.18768 5.21718 5.26547 5.35907 5.37690 5.44910 5.51024 5.60094 5.63361 5.69622 5.77998 5.78616 5.96293 6.02668 6.06011 6.26214 6.35385 6.62487 6.80071 7.41476 7.64731 7.95339 8.42635 8.54425 9.18700 10.81528 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029102 B = 0.001692 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.897104 B =16545.730979 C =17048.060454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 N -0.457 5.457 4 C 0.191 3.809 5 C 0.160 3.840 6 N -0.672 5.672 7 C 0.081 3.919 8 H 0.090 0.910 9 C -0.191 4.191 10 C 0.156 3.844 11 H 0.096 0.904 12 C -0.163 4.163 13 N -0.734 5.734 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 O -0.203 6.203 27 C -0.052 4.052 28 C -0.067 4.067 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.349 0.651 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.396 0.604 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.270 0.730 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.650 -27.956 -14.626 35.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 N -0.187 5.187 4 C -0.016 4.016 5 C 0.031 3.969 6 N -0.306 5.306 7 C -0.029 4.029 8 H 0.108 0.892 9 C -0.249 4.249 10 C 0.050 3.950 11 H 0.114 0.886 12 C -0.222 4.222 13 N -0.390 5.390 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 O -0.091 6.091 27 C -0.105 4.105 28 C -0.123 4.123 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.168 0.832 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.231 0.769 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.786 -26.114 -13.480 34.880 hybrid contribution 2.254 -1.366 -0.696 2.726 sum -16.532 -27.480 -14.176 35.063 Atomic orbital electron populations 1.20123 0.86455 1.03320 1.02981 1.21597 0.98071 0.87678 1.06228 1.70364 1.00434 1.31154 1.16731 1.25938 0.95463 0.78689 1.01554 1.20257 0.88824 0.96158 0.91698 1.60355 1.37660 1.20957 1.11581 1.21752 0.87587 0.94798 0.98766 0.89152 1.22604 0.98896 1.01052 1.02381 1.20723 0.88479 0.92657 0.93105 0.88567 1.22190 1.01634 0.99222 0.99135 1.46137 1.14710 1.27777 1.50360 1.20253 0.89814 0.79902 0.78276 1.90706 1.35954 1.68843 1.43542 1.23287 0.97818 1.01073 1.05337 1.84805 1.20522 1.26273 1.59867 1.22327 0.95918 1.14095 1.34604 0.89427 1.24710 0.95571 0.95477 0.95525 1.69938 1.20778 1.20235 1.40785 0.86735 0.84066 0.79163 0.81895 1.19226 1.19955 1.15885 1.84364 1.30314 1.24192 1.70184 1.23194 0.80763 0.98270 1.08267 1.20265 1.02033 0.86361 1.03686 0.90611 0.90448 0.90822 0.91995 0.86514 0.83185 0.91432 0.92265 0.91266 0.91286 0.92834 0.91820 0.76863 0.88600 0.88529 0.91964 0.89867 0.90307 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.05 36.01 0.36 -0.08 16 2 C -0.02 -0.15 7.11 -82.81 -0.59 -0.74 16 3 N -0.46 -5.32 11.29 -7.35 -0.08 -5.41 16 4 C 0.19 1.88 7.86 -12.95 -0.10 1.78 16 5 C 0.16 1.17 6.11 -4.98 -0.03 1.14 16 6 N -0.67 -5.29 5.59 -107.99 -0.60 -5.89 16 7 C 0.08 0.62 2.64 -67.71 -0.18 0.44 16 8 H 0.09 0.68 7.80 -51.93 -0.40 0.28 16 9 C -0.19 -1.13 8.68 37.16 0.32 -0.81 16 10 C 0.16 1.73 2.63 -67.93 -0.18 1.55 16 11 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 12 C -0.16 -1.76 8.86 37.16 0.33 -1.43 16 13 N -0.73 -8.99 4.99 -53.80 -0.27 -9.26 16 14 C 0.53 9.34 7.81 -10.99 -0.09 9.25 16 15 O -0.52 -11.15 15.52 5.56 0.09 -11.07 16 16 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 17 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 18 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 22 Si 0.86 21.93 27.74 -169.99 -4.71 17.21 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.23 -6.02 6.74 56.52 0.38 -5.64 16 26 O -0.20 -1.95 10.78 5.35 0.06 -1.89 16 27 C -0.05 -0.43 7.39 -35.69 -0.26 -0.69 16 28 C -0.07 -0.26 10.04 36.00 0.36 0.10 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.27 7.79 -51.93 -0.40 -0.13 16 32 H 0.06 0.33 7.44 -51.93 -0.39 -0.06 16 33 H 0.12 0.83 8.06 -51.92 -0.42 0.41 16 34 H 0.35 2.54 7.68 -39.29 -0.30 2.24 16 35 H 0.07 0.40 6.55 -51.93 -0.34 0.06 16 36 H 0.06 0.29 7.45 -51.93 -0.39 -0.09 16 37 H 0.07 0.40 6.29 -51.93 -0.33 0.07 16 38 H 0.07 0.68 7.13 -51.93 -0.37 0.31 16 39 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.40 3.72 6.58 -40.82 -0.27 3.45 16 42 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.10 1.72 8.14 -51.91 -0.42 1.29 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.22 7.79 -51.93 -0.40 -0.19 16 LS Contribution 398.28 15.07 6.00 6.00 Total: -1.00 -36.46 398.28 -7.64 -44.10 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.28 Total: 1.35 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 0.38 Total: -3.70 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.18 Total: -46.43 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.14 Total: -12.95 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.46 -7.64 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717398823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.480 kcal (2) G-P(sol) polarization free energy of solvation -36.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds