Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34476 * 126.16406 * 2 1 4 4 C 1.30257 * 108.69813 * 179.82670 * 3 2 1 5 5 C 1.50699 * 125.62134 * 180.19030 * 4 3 2 6 6 N 1.46895 * 109.47130 * 90.28946 * 5 4 3 7 7 C 1.46903 * 111.00097 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.46953 * 35.00287 * 7 6 5 9 9 C 1.53004 * 109.47263 * 275.00577 * 7 6 5 10 10 C 1.52998 * 109.47204 * 155.00266 * 7 6 5 11 11 H 1.09002 * 109.47270 * 295.00640 * 10 7 6 12 12 C 1.53003 * 109.47031 * 55.00051 * 10 7 6 13 13 N 1.46500 * 109.47419 * 175.00233 * 10 7 6 14 14 C 1.34771 * 120.00104 * 155.00161 * 13 10 7 15 15 O 1.21280 * 120.00425 * 359.97438 * 14 13 10 16 16 C 1.50703 * 119.99637 * 180.02562 * 14 13 10 17 17 S 1.81003 * 109.46817 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00041 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00160 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00154 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99994 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 119.99879 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47319 * 90.00297 * 22 20 18 24 24 H 1.48501 * 109.47133 * 210.00017 * 22 20 18 25 25 H 1.48499 * 109.47314 * 329.99965 * 22 20 18 26 26 O 1.33969 * 108.76055 * 0.44172 * 4 3 2 27 27 C 1.34332 * 126.16201 * 180.31489 * 2 1 3 28 28 C 1.50698 * 126.44830 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.46953 * 269.68512 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.68110 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.68740 * 1 2 3 32 32 H 1.09002 * 109.47241 * 210.29742 * 5 4 3 33 33 H 1.09011 * 109.46686 * 330.29304 * 5 4 3 34 34 H 1.00902 * 110.99798 * 56.04891 * 6 5 4 35 35 H 1.09001 * 109.46724 * 299.99439 * 9 7 6 36 36 H 1.08993 * 109.46995 * 59.99279 * 9 7 6 37 37 H 1.08997 * 109.46951 * 180.02562 * 9 7 6 38 38 H 1.08999 * 109.47135 * 300.00068 * 12 10 7 39 39 H 1.09002 * 109.47045 * 60.00503 * 12 10 7 40 40 H 1.09001 * 109.47057 * 180.02562 * 12 10 7 41 41 H 0.97002 * 119.99732 * 334.99981 * 13 10 7 42 42 H 1.08995 * 109.47384 * 299.99449 * 16 14 13 43 43 H 1.09003 * 109.47344 * 59.99999 * 16 14 13 44 44 H 0.96999 * 120.00177 * 180.02562 * 21 20 18 45 45 H 1.08992 * 109.47616 * 89.99349 * 28 27 2 46 46 H 1.08995 * 109.46981 * 210.00439 * 28 27 2 47 47 H 1.09003 * 109.46630 * 329.99461 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 0.0037 5 6 4.7480 1.5998 0.0091 6 7 5.1390 1.8864 1.3958 7 6 6.3127 2.7687 1.4403 8 1 6.2670 3.4761 0.6124 9 6 7.5865 1.9291 1.3238 10 6 6.3256 3.5339 2.7650 11 1 5.4631 4.1990 2.8089 12 6 6.2639 2.5415 3.9279 13 7 7.5561 4.3231 2.8612 14 6 7.5906 5.4260 3.6350 15 8 6.6028 5.7656 4.2514 16 6 8.8563 6.2381 3.7334 17 16 8.5857 7.6453 4.8392 18 6 10.1775 8.3976 4.7722 19 1 10.9563 7.9605 4.1649 20 6 10.4308 9.5521 5.5000 21 7 11.6199 10.1144 5.4495 22 14 9.0837 10.3086 6.5499 23 1 9.1392 9.7321 7.9173 24 1 9.2807 11.7787 6.6242 25 1 7.7602 10.0167 5.9429 26 8 3.5734 -0.6446 -0.0036 27 6 2.2997 -1.0845 -0.0060 28 6 1.8493 -2.5226 -0.0144 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3634 0.8928 -0.5089 31 1 -0.3633 -0.8872 -0.5187 32 1 5.5732 1.1093 -0.5072 33 1 4.5041 2.5325 -0.4998 34 1 5.3079 1.0333 1.9075 35 1 7.6323 1.2216 2.1518 36 1 7.5773 1.3839 0.3801 37 1 8.4574 2.5837 1.3573 38 1 5.3484 1.9544 3.8564 39 1 7.1265 1.8765 3.8841 40 1 6.2727 3.0868 4.8717 41 1 8.3461 4.0518 2.3680 42 1 9.6583 5.6145 4.1281 43 1 9.1324 6.6020 2.7438 44 1 11.7970 10.9210 5.9584 45 1 1.7410 -2.8634 -1.0440 46 1 2.5898 -3.1382 0.4962 47 1 0.8913 -2.6062 0.4987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717398823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = -50.629500 kcal Electronic energy + Delta-G solvation = -26402.970258 eV Core-core repulsion = 22519.306405 eV Total energy + Delta-G solvation = -3883.663853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.36233 -40.97154 -38.93552 -36.20648 -35.97889 -34.66750 -34.07582 -32.55269 -30.72934 -30.01806 -29.68361 -27.98342 -27.83235 -25.59621 -24.87194 -22.76242 -22.05878 -21.57551 -20.84950 -19.90976 -18.19998 -17.96634 -17.71360 -17.20296 -17.03725 -16.72237 -16.47945 -16.01629 -15.73566 -15.51733 -15.02601 -14.95621 -14.80663 -14.75202 -14.29420 -14.18638 -13.91776 -13.82027 -13.67028 -13.46199 -13.34223 -13.21430 -13.18177 -13.10419 -13.00659 -12.96521 -12.77174 -12.54532 -11.98921 -11.90761 -11.85030 -11.81403 -11.48353 -11.16719 -10.96616 -10.51959 -10.14266 -9.64201 -9.43886 -8.98708 -8.51200 -6.21576 0.36779 0.99711 1.31370 1.46784 1.52450 1.58708 1.60882 1.65347 2.20708 2.26227 2.72121 2.87182 2.93934 3.27878 3.69914 3.77908 3.82767 3.88093 3.93782 4.12497 4.21305 4.24817 4.30214 4.37460 4.44242 4.48078 4.55902 4.64121 4.67784 4.72491 4.75346 4.82140 4.85592 4.92487 4.98602 5.04790 5.08130 5.17245 5.21002 5.41560 5.41839 5.50295 5.71221 5.79136 6.11815 6.22137 6.50344 6.75910 6.94345 7.24267 8.61077 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029102 B = 0.001692 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.897104 B =16545.730979 C =17048.060454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.046 4.046 3 N -0.497 5.497 4 C 0.181 3.819 5 C 0.165 3.835 6 N -0.684 5.684 7 C 0.094 3.906 8 H 0.095 0.905 9 C -0.187 4.187 10 C 0.155 3.845 11 H 0.063 0.937 12 C -0.156 4.156 13 N -0.706 5.706 14 C 0.536 3.464 15 O -0.562 6.562 16 C -0.111 4.111 17 S -0.178 6.178 18 C -0.528 4.528 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.238 1.238 26 O -0.211 6.211 27 C -0.052 4.052 28 C -0.066 4.066 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.353 0.647 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.414 0.586 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.277 0.723 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.154 -30.408 -15.689 38.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.165 4.165 3 N -0.227 5.227 4 C -0.026 4.026 5 C 0.036 3.964 6 N -0.318 5.318 7 C -0.016 4.016 8 H 0.113 0.887 9 C -0.246 4.246 10 C 0.050 3.950 11 H 0.081 0.919 12 C -0.214 4.214 13 N -0.362 5.362 14 C 0.321 3.679 15 O -0.440 6.440 16 C -0.262 4.262 17 S 0.048 5.952 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.158 4.158 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.183 1.183 25 H -0.162 1.162 26 O -0.098 6.098 27 C -0.105 4.105 28 C -0.122 4.122 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.173 0.827 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.253 0.747 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.104 0.896 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.268 -28.613 -14.582 37.451 hybrid contribution 2.393 -0.769 -0.470 2.557 sum -16.875 -29.382 -15.052 37.076 Atomic orbital electron populations 1.20210 0.84742 1.04176 1.03499 1.22143 0.99464 0.87670 1.07223 1.70342 1.01650 1.32742 1.17975 1.26357 0.95718 0.79124 1.01414 1.20313 0.88765 0.95976 0.91368 1.60222 1.37933 1.21306 1.12329 1.21568 0.88737 0.94924 0.96416 0.88695 1.22582 0.97545 1.00921 1.03505 1.20793 0.86427 0.92209 0.95584 0.91851 1.22112 1.03153 0.99026 0.97135 1.45873 1.16001 1.25866 1.48449 1.19963 0.88432 0.80853 0.78650 1.90699 1.37169 1.70335 1.45845 1.23278 0.99427 0.98916 1.04551 1.84769 1.18557 1.29498 1.62376 1.22468 0.96908 1.14315 1.33916 0.91834 1.25533 0.97566 0.96031 0.96716 1.70011 1.22438 1.21032 1.41938 0.85886 0.81233 0.79113 0.80260 1.18756 1.18316 1.16218 1.84368 1.31099 1.24090 1.70252 1.23981 0.80100 0.99830 1.06570 1.20495 1.02966 0.83700 1.05082 0.90215 0.91395 0.88144 0.89464 0.86704 0.82719 0.91108 0.90578 0.90734 0.90412 0.90627 0.95034 0.74668 0.86788 0.86700 0.91389 0.88245 0.89569 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.05 71.24 0.72 -0.09 16 2 C -0.05 -0.84 7.11 41.26 0.29 -0.55 16 3 N -0.50 -11.60 11.29 -291.97 -3.30 -14.89 16 4 C 0.18 3.45 7.86 88.34 0.69 4.15 16 5 C 0.16 2.15 6.11 85.56 0.52 2.68 16 6 N -0.68 -9.68 5.59 -495.57 -2.77 -12.45 16 7 C 0.09 1.24 2.64 44.92 0.12 1.35 16 8 H 0.09 1.21 7.80 -2.39 -0.02 1.19 16 9 C -0.19 -1.56 8.68 71.98 0.62 -0.93 16 10 C 0.16 3.27 2.63 44.99 0.12 3.39 16 11 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 12 C -0.16 -3.18 8.86 71.98 0.64 -2.54 16 13 N -0.71 -16.06 4.99 -442.53 -2.21 -18.27 16 14 C 0.54 18.35 7.81 87.66 0.68 19.04 16 15 O -0.56 -24.51 15.52 -3.03 -0.05 -24.56 16 16 C -0.11 -4.13 6.16 71.24 0.44 -3.69 16 17 S -0.18 -9.09 18.55 -56.49 -1.05 -10.14 16 18 C -0.53 -30.84 10.04 67.96 0.68 -30.16 16 19 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 20 C 0.05 2.77 5.50 84.86 0.47 3.24 16 21 N -0.92 -55.88 13.97 21.65 0.30 -55.57 16 22 Si 0.91 45.44 27.74 68.60 1.90 47.34 16 23 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.24 -11.90 6.74 99.48 0.67 -11.23 16 26 O -0.21 -3.79 10.78 -3.76 -0.04 -3.83 16 27 C -0.05 -0.79 7.39 24.79 0.18 -0.61 16 28 C -0.07 -0.36 10.04 71.24 0.72 0.35 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.55 7.79 -2.39 -0.02 0.53 16 32 H 0.09 0.69 7.44 -2.39 -0.02 0.67 16 33 H 0.11 1.52 8.06 -2.38 -0.02 1.50 16 34 H 0.35 4.46 7.68 -89.69 -0.69 3.77 16 35 H 0.07 0.58 6.55 -2.39 -0.02 0.57 16 36 H 0.08 0.44 7.45 -2.39 -0.02 0.43 16 37 H 0.07 0.56 6.29 -2.39 -0.02 0.54 16 38 H 0.08 1.45 7.13 -2.39 -0.02 1.44 16 39 H 0.07 1.20 6.57 -2.39 -0.02 1.18 16 40 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.41 6.53 6.58 -92.71 -0.61 5.92 16 42 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 43 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 44 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.11 0.20 7.79 -2.39 -0.02 0.18 16 Total: -1.00 -81.54 398.28 -0.65 -82.19 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -0.34 Total: 14.56 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 6.90 Total: -4.37 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -7.97 Total: -101.20 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.09 Total: -28.39 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.14 kcal Total: -81.54 -0.65 -82.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717398823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.562 kcal (2) G-P(sol) polarization free energy of solvation -81.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds