Wall clock time and date at job start Sat Apr 11 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34468 * 126.16636 * 2 1 4 4 C 1.30260 * 108.70187 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.61694 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.46943 * 90.00562 * 5 4 3 7 7 C 1.46905 * 110.99573 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47329 * 324.99587 * 7 6 5 9 9 C 1.53000 * 109.47255 * 84.99626 * 7 6 5 10 10 C 1.53004 * 109.46677 * 204.99568 * 7 6 5 11 11 H 1.08999 * 109.46713 * 65.00445 * 10 7 6 12 12 C 1.52998 * 109.47415 * 305.00079 * 10 7 6 13 13 N 1.46500 * 109.46683 * 184.99879 * 10 7 6 14 14 C 1.34784 * 119.99629 * 204.99984 * 13 10 7 15 15 O 1.21276 * 120.00008 * 0.02562 * 14 13 10 16 16 C 1.50704 * 119.99823 * 180.02562 * 14 13 10 17 17 S 1.80997 * 109.47023 * 180.02562 * 16 14 13 18 18 C 1.76196 * 99.99794 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00499 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99874 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00111 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00230 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46850 * 59.99907 * 22 20 18 24 24 H 1.48495 * 109.47442 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46878 * 300.00585 * 22 20 18 26 26 O 1.33966 * 108.75987 * 359.73492 * 4 3 2 27 27 C 1.34336 * 126.16644 * 179.97438 * 2 1 3 28 28 C 1.50706 * 126.44006 * 0.02562 * 27 2 1 29 29 H 1.08991 * 109.47534 * 269.99944 * 1 2 3 30 30 H 1.09001 * 109.46868 * 30.00562 * 1 2 3 31 31 H 1.09006 * 109.46902 * 150.00136 * 1 2 3 32 32 H 1.09000 * 109.46565 * 210.00013 * 5 4 3 33 33 H 1.08995 * 109.47288 * 330.00213 * 5 4 3 34 34 H 1.00894 * 111.00366 * 56.04040 * 6 5 4 35 35 H 1.08993 * 109.47287 * 299.99806 * 9 7 6 36 36 H 1.09003 * 109.46984 * 59.99749 * 9 7 6 37 37 H 1.08996 * 109.47024 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47203 * 59.99550 * 12 10 7 39 39 H 1.08993 * 109.47218 * 180.02562 * 12 10 7 40 40 H 1.09000 * 109.47043 * 300.00208 * 12 10 7 41 41 H 0.96998 * 120.00402 * 25.00434 * 13 10 7 42 42 H 1.08995 * 109.46660 * 300.00325 * 16 14 13 43 43 H 1.09001 * 109.47046 * 60.00010 * 16 14 13 44 44 H 0.97003 * 120.00017 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.47015 * 90.00069 * 28 27 2 46 46 H 1.09000 * 109.46646 * 209.99222 * 28 27 2 47 47 H 1.09000 * 109.47248 * 329.99939 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6946 0.0006 5 6 4.7479 1.5999 0.0013 6 7 5.1388 1.8937 1.3866 7 6 6.3132 2.7753 1.4264 8 1 6.9760 2.5355 0.5949 9 6 5.8610 4.2326 1.3142 10 6 7.0583 2.5727 2.7474 11 1 7.4571 1.5591 2.7878 12 6 6.0937 2.7883 3.9153 13 7 8.1593 3.5347 2.8394 14 6 9.2321 3.2596 3.6076 15 8 9.2860 2.2156 4.2222 16 6 10.3645 4.2495 3.7027 17 16 11.6462 3.5961 4.8011 18 6 12.8117 4.9156 4.7300 19 1 12.6053 5.7866 4.1256 20 6 13.9946 4.8363 5.4517 21 7 14.2460 3.7751 6.1888 22 14 15.2300 6.2355 5.3770 23 1 14.5936 7.4844 5.8675 24 1 16.4009 5.9082 6.2296 25 1 15.6777 6.4262 3.9740 26 8 3.5734 -0.6447 0.0068 27 6 2.2997 -1.0845 0.0005 28 6 1.8492 -2.5227 0.0006 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 5.5732 1.1066 -0.5122 33 1 4.5041 2.5297 -0.5124 34 1 5.3076 1.0434 1.9028 35 1 5.3303 4.3769 0.3732 36 1 5.1982 4.4724 2.1457 37 1 6.7324 4.8867 1.3442 38 1 5.2744 2.0726 3.8467 39 1 6.6246 2.6444 4.8562 40 1 5.6949 3.8019 3.8748 41 1 8.1163 4.3697 2.3475 42 1 10.7860 4.4156 2.7114 43 1 9.9902 5.1925 4.1011 44 1 15.0726 3.7198 6.6934 45 1 1.7410 -2.8695 -1.0271 46 1 2.5898 -3.1353 0.5147 47 1 0.8912 -2.6033 0.5141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717398824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:26 Heat of formation + Delta-G solvation = -21.733896 kcal Electronic energy + Delta-G solvation = -26351.076353 eV Core-core repulsion = 22468.665507 eV Total energy + Delta-G solvation = -3882.410846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.69083 -39.73171 -37.86635 -35.52907 -34.99018 -33.31235 -32.42957 -31.49360 -29.77993 -29.51384 -28.46900 -27.51381 -25.49454 -24.89765 -23.86550 -22.04598 -20.93125 -20.69214 -19.83679 -17.98841 -17.25553 -17.16562 -16.56347 -16.36899 -15.87935 -15.28118 -14.91879 -14.81585 -14.77179 -14.51625 -14.28267 -13.87920 -13.67482 -13.50266 -13.41930 -13.31801 -13.04817 -12.94825 -12.82426 -12.61738 -12.51904 -12.32506 -12.28000 -11.88691 -11.77510 -11.26678 -11.13888 -11.04636 -11.03728 -10.84320 -10.79115 -10.75539 -9.82599 -9.41525 -9.06599 -9.04805 -8.92577 -8.83701 -8.24248 -6.50140 -6.21589 -3.92290 1.02720 2.20354 2.29588 2.99532 3.08782 3.23506 3.26897 3.29759 3.49703 3.68096 3.94481 4.20543 4.30550 4.38320 4.43474 4.58728 4.72402 4.81179 4.87324 4.91416 4.96371 5.11383 5.13477 5.13563 5.18712 5.27695 5.35174 5.38019 5.41873 5.47036 5.59716 5.62162 5.63478 5.72452 5.79881 5.88653 5.93241 5.98370 6.07829 6.13673 6.33909 6.41808 6.65445 6.80750 7.43178 7.59157 7.69904 8.34896 8.61005 9.23600 10.85745 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032535 B = 0.001619 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.402270 B =17295.505597 C =17672.567387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.018 4.018 3 N -0.459 5.459 4 C 0.192 3.808 5 C 0.159 3.841 6 N -0.672 5.672 7 C 0.079 3.921 8 H 0.056 0.944 9 C -0.146 4.146 10 C 0.143 3.857 11 H 0.086 0.914 12 C -0.158 4.158 13 N -0.733 5.733 14 C 0.533 3.467 15 O -0.517 6.517 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 O -0.202 6.202 27 C -0.050 4.050 28 C -0.068 4.068 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.349 0.651 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.052 -6.969 -15.827 32.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.138 4.138 3 N -0.189 5.189 4 C -0.015 4.015 5 C 0.029 3.971 6 N -0.306 5.306 7 C -0.030 4.030 8 H 0.074 0.926 9 C -0.203 4.203 10 C 0.038 3.962 11 H 0.104 0.896 12 C -0.216 4.216 13 N -0.389 5.389 14 C 0.319 3.681 15 O -0.391 6.391 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 O -0.089 6.089 27 C -0.103 4.103 28 C -0.124 4.124 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.168 0.832 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.233 0.767 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.415 -7.698 -14.604 32.002 hybrid contribution 1.638 1.214 -1.242 2.387 sum -25.777 -6.484 -15.846 30.945 Atomic orbital electron populations 1.20108 0.86488 1.03261 1.02917 1.21572 0.98018 0.87708 1.06485 1.70336 1.00407 1.31161 1.16986 1.25924 0.95405 0.78737 1.01477 1.20281 0.89014 0.95931 0.91835 1.60527 1.37606 1.21029 1.11427 1.21753 0.89719 0.94501 0.97065 0.92592 1.21890 1.01439 0.93998 1.03013 1.20908 0.86970 0.94436 0.93914 0.89642 1.22135 0.98876 1.02434 0.98161 1.46130 1.19405 1.22498 1.50891 1.20316 0.82228 0.87498 0.78008 1.90697 1.79171 1.25802 1.43414 1.23536 0.99373 1.01289 1.06244 1.85391 1.13252 1.27474 1.57176 1.22833 1.05746 1.05660 1.34265 0.90972 1.24987 0.97413 0.96627 0.94499 1.70008 1.25263 1.27525 1.27501 0.86228 0.79765 0.81266 0.78261 1.19928 1.20806 1.19954 1.84380 1.30301 1.24172 1.70005 1.23214 0.80761 0.98308 1.08010 1.20279 1.02053 0.86395 1.03714 0.90672 0.90544 0.90820 0.91953 0.86610 0.83178 0.92299 0.90963 0.92180 0.91333 0.92073 0.92129 0.76672 0.89265 0.89192 0.92129 0.89841 0.90195 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.05 36.00 0.36 -0.07 16 2 C -0.02 -0.17 7.11 -82.82 -0.59 -0.76 16 3 N -0.46 -5.27 11.29 -7.36 -0.08 -5.35 16 4 C 0.19 1.96 7.86 -12.94 -0.10 1.86 16 5 C 0.16 1.23 6.11 -4.97 -0.03 1.20 16 6 N -0.67 -5.62 5.50 -107.98 -0.59 -6.21 16 7 C 0.08 0.66 2.66 -67.71 -0.18 0.49 16 8 H 0.06 0.45 7.80 -51.93 -0.40 0.04 16 9 C -0.15 -1.11 8.93 37.16 0.33 -0.77 16 10 C 0.14 1.62 2.30 -67.93 -0.16 1.46 16 11 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 12 C -0.16 -1.81 9.02 37.16 0.34 -1.47 16 13 N -0.73 -9.43 4.99 -53.80 -0.27 -9.70 16 14 C 0.53 9.74 7.81 -10.98 -0.09 9.66 16 15 O -0.52 -11.53 15.52 5.56 0.09 -11.44 16 16 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 22 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 O -0.20 -2.08 10.77 5.39 0.06 -2.02 16 27 C -0.05 -0.44 7.39 -35.68 -0.26 -0.70 16 28 C -0.07 -0.31 10.04 36.01 0.36 0.05 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.27 7.79 -51.93 -0.40 -0.13 16 32 H 0.06 0.40 8.05 -51.93 -0.42 -0.02 16 33 H 0.12 0.82 7.44 -51.93 -0.39 0.43 16 34 H 0.35 3.00 7.91 -39.30 -0.31 2.69 16 35 H 0.06 0.41 7.45 -51.93 -0.39 0.02 16 36 H 0.07 0.61 6.57 -51.93 -0.34 0.27 16 37 H 0.06 0.41 6.29 -51.93 -0.33 0.08 16 38 H 0.07 0.72 7.17 -51.93 -0.37 0.34 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 41 H 0.40 4.04 6.58 -40.82 -0.27 3.77 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.25 7.79 -51.93 -0.40 -0.15 16 LS Contribution 401.25 15.07 6.05 6.05 Total: -1.00 -36.21 401.25 -8.11 -44.32 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.26 Total: 2.11 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 0.40 Total: -4.85 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.21 Total: -46.68 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.14 Total: -13.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.21 -8.11 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717398824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.588 kcal (2) G-P(sol) polarization free energy of solvation -36.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds