Wall clock time and date at job start Sat Apr 11 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34468 * 126.16636 * 2 1 4 4 C 1.30260 * 108.70187 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.61694 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.46943 * 90.00562 * 5 4 3 7 7 C 1.46905 * 110.99573 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47329 * 324.99587 * 7 6 5 9 9 C 1.53000 * 109.47255 * 84.99626 * 7 6 5 10 10 C 1.53004 * 109.46677 * 204.99568 * 7 6 5 11 11 H 1.08999 * 109.46713 * 65.00445 * 10 7 6 12 12 C 1.52998 * 109.47415 * 305.00079 * 10 7 6 13 13 N 1.46500 * 109.46683 * 184.99879 * 10 7 6 14 14 C 1.34784 * 119.99629 * 204.99984 * 13 10 7 15 15 O 1.21276 * 120.00008 * 0.02562 * 14 13 10 16 16 C 1.50704 * 119.99823 * 180.02562 * 14 13 10 17 17 S 1.80997 * 109.47023 * 180.02562 * 16 14 13 18 18 C 1.76196 * 99.99794 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00499 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99874 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00111 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00230 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46850 * 59.99907 * 22 20 18 24 24 H 1.48495 * 109.47442 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46878 * 300.00585 * 22 20 18 26 26 O 1.33966 * 108.75987 * 359.73492 * 4 3 2 27 27 C 1.34336 * 126.16644 * 179.97438 * 2 1 3 28 28 C 1.50706 * 126.44006 * 0.02562 * 27 2 1 29 29 H 1.08991 * 109.47534 * 269.99944 * 1 2 3 30 30 H 1.09001 * 109.46868 * 30.00562 * 1 2 3 31 31 H 1.09006 * 109.46902 * 150.00136 * 1 2 3 32 32 H 1.09000 * 109.46565 * 210.00013 * 5 4 3 33 33 H 1.08995 * 109.47288 * 330.00213 * 5 4 3 34 34 H 1.00894 * 111.00366 * 56.04040 * 6 5 4 35 35 H 1.08993 * 109.47287 * 299.99806 * 9 7 6 36 36 H 1.09003 * 109.46984 * 59.99749 * 9 7 6 37 37 H 1.08996 * 109.47024 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47203 * 59.99550 * 12 10 7 39 39 H 1.08993 * 109.47218 * 180.02562 * 12 10 7 40 40 H 1.09000 * 109.47043 * 300.00208 * 12 10 7 41 41 H 0.96998 * 120.00402 * 25.00434 * 13 10 7 42 42 H 1.08995 * 109.46660 * 300.00325 * 16 14 13 43 43 H 1.09001 * 109.47046 * 60.00010 * 16 14 13 44 44 H 0.97003 * 120.00017 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.47015 * 90.00069 * 28 27 2 46 46 H 1.09000 * 109.46646 * 209.99222 * 28 27 2 47 47 H 1.09000 * 109.47248 * 329.99939 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6946 0.0006 5 6 4.7479 1.5999 0.0013 6 7 5.1388 1.8937 1.3866 7 6 6.3132 2.7753 1.4264 8 1 6.9760 2.5355 0.5949 9 6 5.8610 4.2326 1.3142 10 6 7.0583 2.5727 2.7474 11 1 7.4571 1.5591 2.7878 12 6 6.0937 2.7883 3.9153 13 7 8.1593 3.5347 2.8394 14 6 9.2321 3.2596 3.6076 15 8 9.2860 2.2156 4.2222 16 6 10.3645 4.2495 3.7027 17 16 11.6462 3.5961 4.8011 18 6 12.8117 4.9156 4.7300 19 1 12.6053 5.7866 4.1256 20 6 13.9946 4.8363 5.4517 21 7 14.2460 3.7751 6.1888 22 14 15.2300 6.2355 5.3770 23 1 14.5936 7.4844 5.8675 24 1 16.4009 5.9082 6.2296 25 1 15.6777 6.4262 3.9740 26 8 3.5734 -0.6447 0.0068 27 6 2.2997 -1.0845 0.0005 28 6 1.8492 -2.5227 0.0006 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 5.5732 1.1066 -0.5122 33 1 4.5041 2.5297 -0.5124 34 1 5.3076 1.0434 1.9028 35 1 5.3303 4.3769 0.3732 36 1 5.1982 4.4724 2.1457 37 1 6.7324 4.8867 1.3442 38 1 5.2744 2.0726 3.8467 39 1 6.6246 2.6444 4.8562 40 1 5.6949 3.8019 3.8748 41 1 8.1163 4.3697 2.3475 42 1 10.7860 4.4156 2.7114 43 1 9.9902 5.1925 4.1011 44 1 15.0726 3.7198 6.6934 45 1 1.7410 -2.8695 -1.0271 46 1 2.5898 -3.1353 0.5147 47 1 0.8912 -2.6033 0.5141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717398824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:25 Heat of formation + Delta-G solvation = -50.117192 kcal Electronic energy + Delta-G solvation = -26352.307145 eV Core-core repulsion = 22468.665507 eV Total energy + Delta-G solvation = -3883.641638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.36990 -40.97352 -38.87663 -36.21203 -35.96033 -34.57923 -34.04875 -32.54732 -30.70073 -30.03340 -29.71065 -28.16517 -27.64924 -25.59201 -24.66666 -22.74332 -21.94546 -21.57539 -20.81050 -19.86640 -18.22369 -17.95532 -17.74071 -17.30330 -16.87318 -16.72022 -16.37833 -16.16224 -15.92137 -15.39379 -15.08548 -14.91138 -14.70423 -14.42705 -14.17788 -14.10936 -14.02804 -13.81772 -13.63325 -13.41865 -13.19302 -13.18618 -13.16831 -13.07743 -12.92285 -12.85894 -12.64749 -12.53148 -11.98511 -11.95202 -11.77938 -11.66034 -11.50389 -11.12301 -10.94793 -10.27181 -10.15033 -9.69383 -9.46777 -8.66002 -8.33920 -6.12049 0.36242 1.26817 1.44427 1.46295 1.53420 1.58600 1.62458 1.66388 2.22905 2.28941 2.91695 3.00210 3.20274 3.33787 3.57307 3.76434 3.86966 3.89845 3.99129 4.13945 4.17900 4.29399 4.31269 4.37427 4.46485 4.52026 4.59387 4.63113 4.66506 4.76612 4.80560 4.83032 4.83407 4.98060 4.98985 5.01573 5.08058 5.16961 5.26088 5.42194 5.42350 5.47749 5.50367 5.78150 6.10483 6.20155 6.50476 6.74285 7.07315 7.25342 8.74973 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032535 B = 0.001619 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.402270 B =17295.505597 C =17672.567387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.042 4.042 3 N -0.489 5.489 4 C 0.180 3.820 5 C 0.162 3.838 6 N -0.676 5.676 7 C 0.092 3.908 8 H 0.067 0.933 9 C -0.145 4.145 10 C 0.144 3.856 11 H 0.066 0.934 12 C -0.150 4.150 13 N -0.706 5.706 14 C 0.536 3.464 15 O -0.564 6.564 16 C -0.130 4.130 17 S -0.151 6.151 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 O -0.216 6.216 27 C -0.056 4.056 28 C -0.067 4.067 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.346 0.654 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.415 0.585 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.271 0.729 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.167 -5.645 -17.760 33.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.162 4.162 3 N -0.219 5.219 4 C -0.027 4.027 5 C 0.033 3.967 6 N -0.310 5.310 7 C -0.018 4.018 8 H 0.085 0.915 9 C -0.203 4.203 10 C 0.039 3.961 11 H 0.085 0.915 12 C -0.208 4.208 13 N -0.362 5.362 14 C 0.322 3.678 15 O -0.442 6.442 16 C -0.281 4.281 17 S 0.076 5.924 18 C -0.696 4.696 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.186 1.186 26 O -0.103 6.103 27 C -0.108 4.108 28 C -0.124 4.124 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.165 0.835 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -28.581 -6.346 -16.583 33.647 hybrid contribution 1.819 0.750 -0.702 2.089 sum -26.762 -5.596 -17.285 32.346 Atomic orbital electron populations 1.20211 0.84467 1.04270 1.03569 1.22148 0.99502 0.87538 1.06963 1.70319 1.01267 1.32447 1.17899 1.26334 0.95799 0.79007 1.01560 1.20367 0.88723 0.96129 0.91453 1.60549 1.37378 1.21017 1.12033 1.21635 0.89640 0.95291 0.95212 0.91481 1.21907 1.01857 0.93140 1.03368 1.20991 0.86347 0.92984 0.95791 0.91545 1.22053 0.98756 1.03457 0.96578 1.45854 1.18038 1.23318 1.48986 1.20060 0.82981 0.86448 0.78345 1.90690 1.80207 1.27582 1.45736 1.23380 0.97601 1.01871 1.05287 1.85579 1.16777 1.29725 1.60347 1.23188 1.06106 1.05805 1.34475 0.89842 1.26122 0.99662 0.99516 0.93787 1.70179 1.26025 1.29985 1.28598 0.85010 0.76680 0.77530 0.78816 1.18669 1.20451 1.18624 1.84383 1.31342 1.24382 1.70216 1.24000 0.80095 0.99951 1.06790 1.20497 1.02932 0.83864 1.05058 0.90108 0.91067 0.88295 0.90510 0.85738 0.83499 0.91121 0.91725 0.91102 0.90333 0.95144 0.90951 0.74581 0.87076 0.87223 0.92018 0.88237 0.89952 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.05 71.24 0.72 -0.02 16 2 C -0.04 -0.77 7.11 41.26 0.29 -0.48 16 3 N -0.49 -11.05 11.29 -291.98 -3.30 -14.35 16 4 C 0.18 3.58 7.86 88.34 0.69 4.28 16 5 C 0.16 2.30 6.11 85.56 0.52 2.83 16 6 N -0.68 -10.42 5.50 -495.55 -2.73 -13.15 16 7 C 0.09 1.35 2.66 44.92 0.12 1.47 16 8 H 0.07 0.89 7.80 -2.39 -0.02 0.87 16 9 C -0.14 -1.80 8.93 71.98 0.64 -1.15 16 10 C 0.14 3.12 2.30 44.99 0.10 3.22 16 11 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 12 C -0.15 -3.37 9.02 71.98 0.65 -2.72 16 13 N -0.71 -17.04 4.99 -442.52 -2.21 -19.25 16 14 C 0.54 19.36 7.81 87.66 0.68 20.05 16 15 O -0.56 -25.86 15.52 -3.02 -0.05 -25.91 16 16 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 17 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 18 C -0.55 -31.20 9.50 67.95 0.65 -30.55 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.79 5.49 84.86 0.47 1.26 16 21 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 22 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 26 O -0.22 -4.38 10.77 -3.64 -0.04 -4.41 16 27 C -0.06 -0.92 7.39 24.80 0.18 -0.74 16 28 C -0.07 -0.48 10.04 71.24 0.72 0.23 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.51 7.79 -2.38 -0.02 0.50 16 32 H 0.08 0.86 8.05 -2.39 -0.02 0.84 16 33 H 0.12 1.53 7.44 -2.39 -0.02 1.51 16 34 H 0.35 5.73 7.91 -89.70 -0.71 5.02 16 35 H 0.07 0.76 7.45 -2.39 -0.02 0.74 16 36 H 0.06 0.93 6.57 -2.39 -0.02 0.92 16 37 H 0.07 0.72 6.29 -2.39 -0.02 0.71 16 38 H 0.08 1.60 7.17 -2.39 -0.02 1.59 16 39 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 40 H 0.07 1.45 6.57 -2.39 -0.02 1.43 16 41 H 0.42 7.21 6.58 -92.71 -0.61 6.60 16 42 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 43 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 44 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.11 0.34 7.79 -2.39 -0.02 0.32 16 Total: -1.00 -81.76 401.25 -0.61 -82.37 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.32 Total: 21.52 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 6.87 Total: -6.97 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -7.95 Total: -102.51 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.09 Total: -30.32 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -81.76 -0.61 -82.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717398824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.257 kcal (2) G-P(sol) polarization free energy of solvation -81.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds