Wall clock time and date at job start Sat Apr 11 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34330 * 126.44282 * 2 1 4 4 N 1.34478 * 107.67002 * 179.97438 * 3 2 1 5 5 C 1.30251 * 108.69827 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.61640 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46904 * 195.02829 * 6 5 4 8 8 C 1.52999 * 109.47150 * 75.02915 * 6 5 4 9 9 N 1.46903 * 109.46830 * 315.02614 * 6 5 4 10 10 C 1.46898 * 110.99673 * 204.99929 * 9 6 5 11 11 C 1.53006 * 109.47006 * 180.02562 * 10 9 6 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47294 * 179.97438 * 12 11 10 14 14 C 1.46498 * 120.00144 * 270.00112 * 13 12 11 15 15 C 1.34778 * 120.00061 * 89.99672 * 13 12 11 16 16 O 1.21273 * 119.99769 * 0.02562 * 15 13 12 17 17 C 1.50706 * 119.99884 * 180.02562 * 15 13 12 18 18 S 1.81001 * 109.46848 * 180.02562 * 17 15 13 19 19 C 1.76197 * 99.99697 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00206 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99714 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99908 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99719 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47280 * 90.00326 * 23 21 19 25 25 H 1.48503 * 109.47162 * 209.99910 * 23 21 19 26 26 H 1.48500 * 109.47584 * 329.99910 * 23 21 19 27 27 O 1.33965 * 108.76672 * 0.23355 * 5 4 3 28 28 H 1.08995 * 109.46830 * 90.03789 * 1 2 3 29 29 H 1.09007 * 109.46841 * 210.03160 * 1 2 3 30 30 H 1.08995 * 109.47025 * 330.03094 * 1 2 3 31 31 H 1.08002 * 126.16314 * 359.93094 * 3 2 1 32 32 H 1.08994 * 109.47047 * 59.99952 * 8 6 5 33 33 H 1.08996 * 109.46853 * 180.02562 * 8 6 5 34 34 H 1.08998 * 109.46692 * 300.00039 * 8 6 5 35 35 H 1.00894 * 111.00528 * 328.95400 * 9 6 5 36 36 H 1.09001 * 109.47392 * 60.00807 * 10 9 6 37 37 H 1.09001 * 109.47520 * 300.00529 * 10 9 6 38 38 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 39 39 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 40 40 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 41 41 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 42 42 H 1.08999 * 109.47588 * 89.99526 * 14 13 12 43 43 H 1.08998 * 109.47404 * 210.00102 * 14 13 12 44 44 H 1.09007 * 109.47059 * 329.99578 * 14 13 12 45 45 H 1.08998 * 109.46789 * 300.00079 * 17 15 13 46 46 H 1.08994 * 109.46953 * 60.00002 * 17 15 13 47 47 H 0.97005 * 119.99581 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5765 -0.6547 0.0015 6 6 4.8005 -1.5339 0.0018 7 1 4.5165 -2.5521 -0.2639 8 6 5.4325 -1.5278 1.3952 9 7 5.7696 -1.0244 -0.9777 10 6 6.6586 -2.0964 -1.4451 11 6 7.6519 -1.5285 -2.4610 12 6 8.5774 -2.6451 -2.9484 13 7 9.5280 -2.1015 -3.9215 14 6 9.1919 -2.0923 -5.3474 15 6 10.7118 -1.6099 -3.5050 16 8 10.9901 -1.6179 -2.3247 17 6 11.6894 -1.0502 -4.5061 18 16 13.1727 -0.4739 -3.6435 19 6 14.1149 0.1110 -5.0126 20 1 13.7135 0.0430 -6.0129 21 6 15.3728 0.6602 -4.8054 22 7 15.8618 0.7435 -3.5862 23 14 16.3714 1.2809 -6.2569 24 1 16.0590 2.7127 -6.4966 25 1 17.8192 1.1330 -5.9611 26 1 16.0303 0.4904 -7.4669 27 8 2.3075 -1.0840 -0.0037 28 1 -0.3633 -0.0007 -1.0276 29 1 -0.3633 -0.8898 0.5144 30 1 -0.3633 0.8902 0.5133 31 1 1.9821 2.1112 -0.0011 32 1 4.7134 -1.9058 2.1218 33 1 6.3179 -2.1634 1.3952 34 1 5.7164 -0.5096 1.6608 35 1 5.3008 -0.5798 -1.7526 36 1 6.0658 -2.8808 -1.9156 37 1 7.2037 -2.5118 -0.5976 38 1 7.1070 -1.1129 -3.3087 39 1 8.2446 -0.7443 -1.9903 40 1 9.1223 -3.0612 -2.1010 41 1 7.9843 -3.4291 -3.4193 42 1 8.6850 -1.1598 -5.5953 43 1 10.1051 -2.1771 -5.9365 44 1 8.5357 -2.9334 -5.5715 45 1 11.9634 -1.8271 -5.2198 46 1 11.2295 -0.2160 -5.0358 47 1 16.7407 1.1276 -3.4415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722979347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:54 Heat of formation + Delta-G solvation = -14.081503 kcal Electronic energy + Delta-G solvation = -26049.106693 eV Core-core repulsion = 22167.027680 eV Total energy + Delta-G solvation = -3882.079013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.72008 -39.47330 -37.74199 -35.61199 -35.00982 -33.58608 -32.40147 -32.31028 -30.28824 -28.64754 -27.28513 -26.70018 -25.50841 -24.70859 -23.61684 -22.19028 -21.58532 -20.87479 -19.13142 -17.64608 -17.62703 -17.14549 -16.64898 -16.41307 -15.91505 -15.43402 -15.28358 -14.87089 -14.77950 -14.48679 -14.10903 -13.95026 -13.83024 -13.58308 -13.31075 -13.07192 -12.87935 -12.85354 -12.60796 -12.59376 -12.44686 -12.25968 -12.03393 -11.69649 -11.64041 -11.60665 -11.53211 -11.04161 -10.99588 -10.80874 -10.77066 -10.70831 -9.77789 -9.32089 -9.08089 -9.03917 -8.84170 -8.51270 -8.19011 -6.46726 -6.18815 -3.89111 1.00881 2.12060 2.33705 2.96786 3.10232 3.24334 3.28129 3.32248 3.58418 3.61512 3.79404 4.23022 4.33392 4.52102 4.60883 4.72803 4.75424 4.85025 4.87663 4.92874 5.05020 5.06322 5.13983 5.16299 5.17360 5.27692 5.34248 5.38098 5.44439 5.51227 5.54551 5.58486 5.62639 5.68021 5.72634 5.89067 5.94149 5.99304 6.06603 6.16579 6.19081 6.57908 6.70980 6.94713 7.41253 7.56325 7.62295 8.37851 8.60415 9.26374 10.88604 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.001612 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.915290 B =17360.255444 C =17579.350710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.051 4.051 3 C -0.044 4.044 4 N -0.453 5.453 5 C 0.178 3.822 6 C 0.189 3.811 7 H 0.070 0.930 8 C -0.138 4.138 9 N -0.668 5.668 10 C 0.063 3.937 11 C -0.133 4.133 12 C 0.121 3.879 13 N -0.625 5.625 14 C 0.081 3.919 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 O -0.204 6.204 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.184 0.816 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.348 0.652 36 H 0.032 0.968 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.914 -6.825 3.560 32.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C -0.183 4.183 4 N -0.181 5.181 5 C -0.029 4.029 6 C 0.078 3.922 7 H 0.087 0.913 8 C -0.196 4.196 9 N -0.302 5.302 10 C -0.067 4.067 11 C -0.172 4.172 12 C -0.003 4.003 13 N -0.362 5.362 14 C -0.062 4.062 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 O -0.090 6.090 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.201 0.799 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.167 0.833 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.366 -6.255 5.897 31.560 hybrid contribution -1.082 -0.281 -3.037 3.236 sum -31.448 -6.535 2.860 32.247 Atomic orbital electron populations 1.20278 0.83905 1.04427 1.03839 1.23526 0.95064 0.84661 1.07191 1.23208 0.87859 1.00465 1.06731 1.70487 1.22503 1.08914 1.16201 1.26291 0.83980 0.90622 1.02011 1.19809 0.82984 0.92945 0.96459 0.91258 1.21830 1.00764 1.04340 0.92701 1.60504 1.21228 1.30099 1.18356 1.22015 0.94354 0.91802 0.98488 1.21922 0.97306 0.99872 0.98120 1.21305 0.90717 0.94939 0.93326 1.47847 1.17386 1.63481 1.07440 1.21761 1.01818 1.01510 0.81136 1.20340 0.81112 0.76867 0.89641 1.90695 1.75881 1.54360 1.17739 1.23561 1.01566 1.03274 1.01696 1.85401 1.08339 1.78120 1.11605 1.22863 1.04423 1.46922 0.94142 0.90975 1.24987 0.96682 0.95256 0.96635 1.70022 1.17891 1.42350 1.19978 0.86175 0.78859 0.79116 0.81383 1.20282 1.20761 1.19723 1.84384 1.17845 1.36784 1.70035 0.89760 0.90353 0.88872 0.79898 0.92243 0.90669 0.90550 0.83305 0.94999 0.90024 0.92086 0.89888 0.89684 0.91137 0.92865 0.90652 0.91530 0.89320 0.89308 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.43 36.01 0.38 0.13 16 2 C -0.05 -0.41 7.39 -35.69 -0.26 -0.67 16 3 C -0.04 -0.40 11.80 -17.77 -0.21 -0.61 16 4 N -0.45 -5.29 11.28 -11.10 -0.13 -5.41 16 5 C 0.18 1.85 6.84 -12.94 -0.09 1.76 16 6 C 0.19 1.66 3.16 -68.86 -0.22 1.45 16 7 H 0.07 0.50 7.80 -51.93 -0.40 0.10 16 8 C -0.14 -1.17 9.40 37.16 0.35 -0.82 16 9 N -0.67 -6.54 6.29 -107.94 -0.68 -7.22 16 10 C 0.06 0.55 5.48 -3.82 -0.02 0.53 16 11 C -0.13 -1.45 5.80 -26.73 -0.15 -1.60 16 12 C 0.12 1.39 5.45 -4.05 -0.02 1.37 16 13 N -0.63 -8.78 2.87 -181.57 -0.52 -9.31 16 14 C 0.08 0.84 10.28 59.85 0.62 1.46 16 15 C 0.53 10.24 7.69 -10.98 -0.08 10.16 16 16 O -0.51 -11.80 15.44 5.56 0.09 -11.71 16 17 C -0.15 -3.11 4.71 36.01 0.17 -2.94 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 23 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 O -0.20 -2.00 10.78 5.36 0.06 -1.94 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.59 7.45 -51.93 -0.39 0.20 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.35 3.44 8.35 -39.29 -0.33 3.11 16 36 H 0.03 0.23 8.06 -51.93 -0.42 -0.19 16 37 H 0.08 0.74 7.44 -51.93 -0.39 0.35 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.12 7.42 -51.93 -0.39 0.73 16 41 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 44 H 0.07 0.51 7.89 -51.92 -0.41 0.10 16 45 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16 46 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 408.31 15.07 6.15 6.15 Total: -1.00 -36.72 408.31 -8.50 -45.23 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.62 Total: 0.08 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 0.65 Total: -2.86 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.59 Total: -47.57 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.14 Total: -13.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.72 -8.50 -45.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722979347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.144 kcal (2) G-P(sol) polarization free energy of solvation -36.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds