Wall clock time and date at job start Sat Apr 11 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34330 * 126.44282 * 2 1 4 4 N 1.34478 * 107.67002 * 179.97438 * 3 2 1 5 5 C 1.30251 * 108.69827 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.61640 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46904 * 195.02829 * 6 5 4 8 8 C 1.52999 * 109.47150 * 75.02915 * 6 5 4 9 9 N 1.46903 * 109.46830 * 315.02614 * 6 5 4 10 10 C 1.46898 * 110.99673 * 204.99929 * 9 6 5 11 11 C 1.53006 * 109.47006 * 180.02562 * 10 9 6 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47294 * 179.97438 * 12 11 10 14 14 C 1.46498 * 120.00144 * 270.00112 * 13 12 11 15 15 C 1.34778 * 120.00061 * 89.99672 * 13 12 11 16 16 O 1.21273 * 119.99769 * 0.02562 * 15 13 12 17 17 C 1.50706 * 119.99884 * 180.02562 * 15 13 12 18 18 S 1.81001 * 109.46848 * 180.02562 * 17 15 13 19 19 C 1.76197 * 99.99697 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00206 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99714 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99908 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99719 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47280 * 90.00326 * 23 21 19 25 25 H 1.48503 * 109.47162 * 209.99910 * 23 21 19 26 26 H 1.48500 * 109.47584 * 329.99910 * 23 21 19 27 27 O 1.33965 * 108.76672 * 0.23355 * 5 4 3 28 28 H 1.08995 * 109.46830 * 90.03789 * 1 2 3 29 29 H 1.09007 * 109.46841 * 210.03160 * 1 2 3 30 30 H 1.08995 * 109.47025 * 330.03094 * 1 2 3 31 31 H 1.08002 * 126.16314 * 359.93094 * 3 2 1 32 32 H 1.08994 * 109.47047 * 59.99952 * 8 6 5 33 33 H 1.08996 * 109.46853 * 180.02562 * 8 6 5 34 34 H 1.08998 * 109.46692 * 300.00039 * 8 6 5 35 35 H 1.00894 * 111.00528 * 328.95400 * 9 6 5 36 36 H 1.09001 * 109.47392 * 60.00807 * 10 9 6 37 37 H 1.09001 * 109.47520 * 300.00529 * 10 9 6 38 38 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 39 39 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 40 40 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 41 41 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 42 42 H 1.08999 * 109.47588 * 89.99526 * 14 13 12 43 43 H 1.08998 * 109.47404 * 210.00102 * 14 13 12 44 44 H 1.09007 * 109.47059 * 329.99578 * 14 13 12 45 45 H 1.08998 * 109.46789 * 300.00079 * 17 15 13 46 46 H 1.08994 * 109.46953 * 60.00002 * 17 15 13 47 47 H 0.97005 * 119.99581 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5765 -0.6547 0.0015 6 6 4.8005 -1.5339 0.0018 7 1 4.5165 -2.5521 -0.2639 8 6 5.4325 -1.5278 1.3952 9 7 5.7696 -1.0244 -0.9777 10 6 6.6586 -2.0964 -1.4451 11 6 7.6519 -1.5285 -2.4610 12 6 8.5774 -2.6451 -2.9484 13 7 9.5280 -2.1015 -3.9215 14 6 9.1919 -2.0923 -5.3474 15 6 10.7118 -1.6099 -3.5050 16 8 10.9901 -1.6179 -2.3247 17 6 11.6894 -1.0502 -4.5061 18 16 13.1727 -0.4739 -3.6435 19 6 14.1149 0.1110 -5.0126 20 1 13.7135 0.0430 -6.0129 21 6 15.3728 0.6602 -4.8054 22 7 15.8618 0.7435 -3.5862 23 14 16.3714 1.2809 -6.2569 24 1 16.0590 2.7127 -6.4966 25 1 17.8192 1.1330 -5.9611 26 1 16.0303 0.4904 -7.4669 27 8 2.3075 -1.0840 -0.0037 28 1 -0.3633 -0.0007 -1.0276 29 1 -0.3633 -0.8898 0.5144 30 1 -0.3633 0.8902 0.5133 31 1 1.9821 2.1112 -0.0011 32 1 4.7134 -1.9058 2.1218 33 1 6.3179 -2.1634 1.3952 34 1 5.7164 -0.5096 1.6608 35 1 5.3008 -0.5798 -1.7526 36 1 6.0658 -2.8808 -1.9156 37 1 7.2037 -2.5118 -0.5976 38 1 7.1070 -1.1129 -3.3087 39 1 8.2446 -0.7443 -1.9903 40 1 9.1223 -3.0612 -2.1010 41 1 7.9843 -3.4291 -3.4193 42 1 8.6850 -1.1598 -5.5953 43 1 10.1051 -2.1771 -5.9365 44 1 8.5357 -2.9334 -5.5715 45 1 11.9634 -1.8271 -5.2198 46 1 11.2295 -0.2160 -5.0358 47 1 16.7407 1.1276 -3.4415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722979347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:53 Heat of formation + Delta-G solvation = -42.177805 kcal Electronic energy + Delta-G solvation = -26050.325040 eV Core-core repulsion = 22167.027680 eV Total energy + Delta-G solvation = -3883.297360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.39636 -40.83628 -38.51622 -36.82127 -35.74501 -34.58193 -34.39530 -32.94426 -31.36286 -29.87427 -27.90463 -27.68792 -27.56221 -25.65017 -24.39260 -22.92745 -22.35173 -21.59312 -20.58223 -19.51339 -18.32311 -18.04538 -17.83430 -17.27967 -17.03053 -16.87349 -16.67936 -16.06672 -15.80413 -15.70799 -15.13158 -14.87601 -14.53688 -14.50447 -14.33374 -14.28719 -13.88773 -13.67944 -13.54598 -13.36378 -13.24469 -13.20924 -13.16316 -13.05511 -12.88825 -12.65815 -12.61370 -12.45688 -12.35096 -12.31491 -11.74100 -11.62197 -11.49821 -11.13863 -10.86228 -10.26078 -9.72615 -9.65332 -9.52766 -8.66972 -8.34032 -6.12564 0.35831 1.26827 1.42913 1.46112 1.50155 1.57654 1.61024 1.64396 2.16272 2.28344 2.94172 2.99996 3.07919 3.28259 3.73528 3.79169 3.96957 3.99658 4.03915 4.08013 4.19054 4.24372 4.31131 4.37677 4.41313 4.48237 4.50576 4.57142 4.60172 4.65632 4.69291 4.71396 4.80205 4.86964 4.95174 5.01773 5.14468 5.15757 5.23186 5.25380 5.32594 5.41833 5.63860 5.88950 6.20038 6.22302 6.29893 6.73015 7.06908 7.18094 8.75298 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.001612 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.915290 B =17360.255444 C =17579.350710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.044 4.044 3 C -0.069 4.069 4 N -0.488 5.488 5 C 0.167 3.833 6 C 0.191 3.809 7 H 0.091 0.909 8 C -0.134 4.134 9 N -0.684 5.684 10 C 0.070 3.930 11 C -0.122 4.122 12 C 0.118 3.882 13 N -0.612 5.612 14 C 0.071 3.929 15 C 0.528 3.472 16 O -0.564 6.564 17 C -0.124 4.124 18 S -0.155 6.155 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.257 1.257 27 O -0.212 6.212 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.203 0.797 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.346 0.654 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.502 -7.884 1.080 35.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.097 4.097 3 C -0.207 4.207 4 N -0.217 5.217 5 C -0.041 4.041 6 C 0.081 3.919 7 H 0.109 0.891 8 C -0.193 4.193 9 N -0.319 5.319 10 C -0.059 4.059 11 C -0.161 4.161 12 C -0.004 4.004 13 N -0.346 5.346 14 C -0.071 4.071 15 C 0.316 3.684 16 O -0.442 6.442 17 C -0.275 4.275 18 S 0.072 5.928 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.181 1.181 27 O -0.099 6.099 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.220 0.780 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.165 0.835 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -33.016 -7.336 3.384 33.990 hybrid contribution -0.475 0.020 -2.267 2.316 sum -33.490 -7.316 1.117 34.298 Atomic orbital electron populations 1.20517 0.80764 1.05838 1.05167 1.24325 0.96628 0.83811 1.04945 1.23623 0.87338 1.01898 1.07849 1.70444 1.24201 1.09910 1.17139 1.26479 0.84559 0.90526 1.02494 1.19856 0.82375 0.93641 0.96042 0.89120 1.21798 1.01350 1.02940 0.93194 1.60450 1.21840 1.30940 1.18625 1.21934 0.93997 0.92031 0.97954 1.21772 0.97093 0.98510 0.98772 1.21536 0.90251 0.95957 0.92699 1.47869 1.15746 1.61235 1.09724 1.22100 1.02694 1.03939 0.78332 1.20148 0.82545 0.77247 0.88503 1.90677 1.77295 1.56800 1.19435 1.23384 0.98475 1.04183 1.01465 1.85597 1.13084 1.79122 1.14964 1.23199 1.04922 1.47022 0.94274 0.89916 1.26143 0.97939 0.95161 0.99905 1.70192 1.18469 1.43415 1.22703 0.84940 0.76792 0.78714 0.77443 1.19367 1.20243 1.18069 1.84388 1.17862 1.37533 1.70123 0.88286 0.89548 0.86824 0.78048 0.91034 0.90095 0.93012 0.83478 0.91993 0.90491 0.90814 0.94357 0.91783 0.86557 0.91597 0.90851 0.87665 0.87348 0.87789 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.43 71.24 0.74 0.42 16 2 C -0.04 -0.65 7.39 24.79 0.18 -0.46 16 3 C -0.07 -1.22 11.80 83.39 0.98 -0.24 16 4 N -0.49 -11.55 11.28 -303.83 -3.43 -14.98 16 5 C 0.17 3.41 6.84 88.35 0.60 4.02 16 6 C 0.19 3.25 3.16 44.17 0.14 3.39 16 7 H 0.09 1.13 7.80 -2.39 -0.02 1.11 16 8 C -0.13 -2.29 9.40 71.98 0.68 -1.62 16 9 N -0.68 -13.14 6.29 -495.42 -3.12 -16.25 16 10 C 0.07 1.13 5.48 86.31 0.47 1.61 16 11 C -0.12 -2.55 5.80 30.60 0.18 -2.38 16 12 C 0.12 2.50 5.45 86.38 0.47 2.97 16 13 N -0.61 -16.13 2.87 -846.76 -2.43 -18.56 16 14 C 0.07 1.22 10.28 127.77 1.31 2.53 16 15 C 0.53 20.44 7.69 87.66 0.67 21.11 16 16 O -0.56 -27.11 15.44 -3.01 -0.05 -27.15 16 17 C -0.12 -5.11 4.71 71.24 0.34 -4.77 16 18 S -0.15 -8.84 20.57 -56.49 -1.16 -10.00 16 19 C -0.55 -31.73 9.50 67.96 0.65 -31.09 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 23 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 O -0.21 -3.96 10.78 -3.74 -0.04 -4.00 16 28 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.25 7.45 -2.39 -0.02 1.23 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.35 6.70 8.35 -89.70 -0.75 5.95 16 36 H 0.06 0.67 8.06 -2.39 -0.02 0.65 16 37 H 0.08 1.33 7.44 -2.39 -0.02 1.32 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.67 7.42 -2.39 -0.02 1.65 16 41 H 0.12 1.46 7.89 -2.38 -0.02 1.44 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 1.32 6.44 -2.39 -0.02 1.31 16 44 H 0.10 1.06 7.89 -2.38 -0.02 1.04 16 45 H 0.11 4.01 7.40 -2.40 -0.02 3.99 16 46 H 0.10 3.93 8.11 -2.40 -0.02 3.92 16 47 H 0.27 15.67 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -85.14 408.31 0.20 -84.95 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.22 Total: 19.74 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 7.89 Total: -3.28 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -8.69 Total: -106.35 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.09 Total: -31.16 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -85.14 0.20 -84.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722979347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.771 kcal (2) G-P(sol) polarization free energy of solvation -85.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds