Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32559 * 121.64884 * 2 1 4 4 S 1.77231 * 105.31936 * 180.19698 * 3 2 1 5 5 C 1.72202 * 94.84605 * 359.76146 * 4 3 2 6 6 O 1.21830 * 127.05815 * 180.02562 * 5 4 3 7 7 N 1.34240 * 105.88838 * 359.97438 * 5 4 3 8 8 C 1.46505 * 121.38581 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46612 * 90.02567 * 8 7 5 10 10 C 1.50704 * 109.47133 * 180.02562 * 9 8 7 11 11 O 1.21285 * 119.99522 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00172 * 179.72300 * 10 9 8 13 13 C 1.46497 * 119.99770 * 0.02562 * 12 10 9 14 14 C 1.46495 * 119.99708 * 180.02562 * 12 10 9 15 15 C 1.52996 * 109.47511 * 90.00670 * 14 12 10 16 16 C 1.52997 * 109.47611 * 179.97438 * 15 14 12 17 17 N 1.46497 * 109.47163 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00300 * 269.99643 * 17 16 15 19 19 C 1.36942 * 119.99850 * 89.99958 * 17 16 15 20 20 H 1.08003 * 119.99942 * 22.34532 * 19 17 16 21 21 C 1.38805 * 120.00080 * 202.34387 * 19 17 16 22 22 N 1.31627 * 119.99843 * 11.34182 * 21 19 17 23 23 Si 1.86798 * 120.00487 * 191.34548 * 21 19 17 24 24 H 1.48504 * 109.47325 * 89.99444 * 23 21 19 25 25 H 1.48496 * 109.47682 * 210.00169 * 23 21 19 26 26 H 1.48503 * 109.46869 * 330.00316 * 23 21 19 27 27 H 1.08998 * 109.47173 * 270.24535 * 1 2 3 28 28 H 1.09006 * 109.47022 * 30.24172 * 1 2 3 29 29 H 1.08998 * 109.47349 * 150.23999 * 1 2 3 30 30 H 1.08005 * 127.34111 * 359.93356 * 3 2 1 31 31 H 1.09004 * 109.46825 * 330.03303 * 8 7 5 32 32 H 1.08996 * 109.47353 * 210.02757 * 8 7 5 33 33 H 1.09004 * 109.46924 * 60.00797 * 9 8 7 34 34 H 1.09000 * 109.47880 * 300.00306 * 9 8 7 35 35 H 1.09000 * 109.47181 * 89.99897 * 13 12 10 36 36 H 1.08998 * 109.46660 * 209.99093 * 13 12 10 37 37 H 1.08997 * 109.47230 * 329.99643 * 13 12 10 38 38 H 1.09002 * 109.46726 * 210.00736 * 14 12 10 39 39 H 1.08999 * 109.47496 * 329.99725 * 14 12 10 40 40 H 1.09007 * 109.46602 * 299.99370 * 15 14 12 41 41 H 1.08993 * 109.47088 * 59.99200 * 15 14 12 42 42 H 1.08998 * 109.46849 * 299.99651 * 16 15 14 43 43 H 1.09006 * 109.47175 * 59.99403 * 16 15 14 44 44 H 1.08995 * 109.46914 * 94.21232 * 18 17 16 45 45 H 1.09000 * 109.47339 * 214.21599 * 18 17 16 46 46 H 1.08998 * 109.46730 * 334.21481 * 18 17 16 47 47 H 0.97003 * 119.99742 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1284 0.0000 4 16 3.9034 0.6302 -0.0059 5 6 3.5606 -1.0574 -0.0008 6 8 4.3672 -1.9704 -0.0016 7 7 2.2221 -1.1605 0.0055 8 6 1.5575 -2.4661 0.0107 9 6 1.3322 -2.9178 1.4550 10 6 0.6490 -4.2611 1.4605 11 8 0.3703 -4.8039 0.4123 12 7 0.3533 -4.8620 2.6301 13 6 0.6955 -4.2091 3.8961 14 6 -0.3102 -6.1680 2.6353 15 6 0.7446 -7.2762 2.6267 16 6 0.0516 -8.6402 2.6328 17 7 1.0618 -9.7012 2.6240 18 6 1.5557 -10.2318 1.3509 19 6 1.5443 -10.1970 3.8058 20 1 0.9642 -10.0952 4.7111 21 6 2.7788 -10.8306 3.8401 22 7 3.5830 -10.7617 2.8003 23 14 3.2991 -11.7809 5.3618 24 1 2.8560 -13.1930 5.2390 25 1 4.7776 -11.7356 5.4925 26 1 2.6769 -11.1698 6.5638 27 1 -0.3633 0.0044 1.0276 28 1 -0.3633 0.8879 -0.5176 29 1 -0.3634 -0.8921 -0.5101 30 1 1.8153 2.1367 -0.0010 31 1 2.1837 -3.1946 -0.5043 32 1 0.5974 -2.3871 -0.4993 33 1 0.7059 -2.1892 1.9700 34 1 2.2922 -2.9968 1.9651 35 1 -0.1358 -3.5816 4.2176 36 1 0.8928 -4.9671 4.6541 37 1 1.5839 -3.5928 3.7586 38 1 -0.9257 -6.2592 3.5303 39 1 -0.9402 -6.2591 1.7505 40 1 1.3600 -7.1849 1.7316 41 1 1.3745 -7.1850 3.5116 42 1 -0.5635 -8.7312 3.5280 43 1 -0.5786 -8.7315 1.7481 44 1 2.4658 -9.7040 1.0660 45 1 1.7709 -11.2948 1.4593 46 1 0.7978 -10.0913 0.5803 47 1 4.4459 -11.2042 2.8245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724849966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = -12.578001 kcal Electronic energy + Delta-G solvation = -27438.901336 eV Core-core repulsion = 23556.887520 eV Total energy + Delta-G solvation = -3882.013816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.40440 -39.84905 -37.86307 -36.33030 -35.31835 -33.80133 -32.35689 -31.54629 -30.20225 -28.54816 -27.00320 -26.02077 -25.70592 -24.61884 -23.37633 -21.97888 -20.61664 -20.16975 -19.18623 -18.40889 -17.73821 -16.79643 -16.60813 -16.58526 -16.03766 -15.76712 -15.28214 -14.72677 -14.67955 -14.17050 -14.13018 -14.09821 -13.95031 -13.59715 -13.33907 -13.09257 -12.92363 -12.85593 -12.69973 -12.60676 -12.24841 -11.76900 -11.63128 -11.48902 -11.41234 -11.35334 -10.90322 -10.81354 -10.66250 -10.39338 -10.34318 -10.03992 -10.01918 -9.87416 -9.74750 -9.67631 -8.64511 -8.48744 -8.28620 -6.69536 -5.66812 -3.12809 0.64763 1.03045 1.46515 1.83612 2.37377 2.55857 3.03492 3.40026 3.45531 3.47545 4.05033 4.36830 4.39078 4.48908 4.53676 4.63947 4.87418 4.92117 4.98411 5.06437 5.10515 5.20617 5.22371 5.32812 5.38997 5.45262 5.54329 5.56899 5.61313 5.77251 5.84788 6.06217 6.12130 6.24602 6.39939 6.51404 6.65134 6.86189 6.88888 7.02863 7.16823 7.35500 7.46288 7.80035 7.86826 8.11493 8.45785 9.29387 9.93378 10.42966 11.38202 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.002186 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.479731 B =12807.004845 C =13508.975415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.104 3.896 3 C -0.242 4.242 4 S -0.004 6.004 5 C 0.479 3.521 6 O -0.464 6.464 7 N -0.533 5.533 8 C 0.115 3.885 9 C -0.155 4.155 10 C 0.518 3.482 11 O -0.537 6.537 12 N -0.610 5.610 13 C 0.076 3.924 14 C 0.116 3.884 15 C -0.151 4.151 16 C 0.157 3.843 17 N -0.603 5.603 18 C 0.165 3.835 19 C -0.252 4.252 20 H 0.068 0.932 21 C -0.001 4.001 22 N -0.908 5.908 23 Si 0.905 3.095 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.280 1.280 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.191 0.809 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.027 0.973 45 H 0.044 0.956 46 H -0.004 1.004 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 28.045 -3.223 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.007 4.007 3 C -0.380 4.380 4 S 0.239 5.761 5 C 0.160 3.840 6 O -0.342 6.342 7 N -0.254 5.254 8 C -0.010 4.010 9 C -0.196 4.196 10 C 0.304 3.696 11 O -0.414 6.414 12 N -0.343 5.343 13 C -0.068 4.068 14 C -0.007 4.007 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.326 5.326 18 C 0.020 3.980 19 C -0.382 4.382 20 H 0.085 0.915 21 C -0.199 4.199 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.206 1.206 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.208 0.792 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.015 0.985 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.480 27.700 -3.809 28.944 hybrid contribution -0.538 -1.115 1.043 1.619 sum -8.018 26.585 -2.766 27.905 Atomic orbital electron populations 1.20833 0.86611 1.04734 1.04103 1.19476 0.95885 0.84918 1.00402 1.24885 0.93220 1.01268 1.18643 1.85220 1.08475 1.01380 1.81043 1.21645 0.83821 0.95712 0.82779 1.91029 1.48505 1.42262 1.52409 1.46174 1.06404 1.07850 1.64993 1.21666 1.00064 0.82309 0.96957 1.21989 1.03017 0.96065 0.98528 1.20188 0.79077 0.86514 0.83795 1.90732 1.53612 1.66097 1.30990 1.47932 1.59766 1.20809 1.05814 1.21828 1.00273 0.98488 0.86171 1.21679 0.95682 0.80896 1.02419 1.22625 0.98482 0.95621 1.02478 1.20726 0.91399 0.86584 0.98449 1.43979 1.46551 1.38674 1.03371 1.20783 0.94485 0.98534 0.84209 1.19206 0.99259 1.31922 0.87825 0.91450 1.25054 0.95682 1.01713 0.97473 1.70085 1.09324 1.46242 1.29676 0.86251 0.77523 0.80141 0.82577 1.21519 1.21784 1.20586 0.89553 0.89077 0.90152 0.79176 0.87595 0.87787 0.88496 0.88179 0.92600 0.90281 0.91345 0.90874 0.90231 0.92361 0.92007 0.93993 0.94464 0.95498 0.93747 0.98512 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.36 9.69 36.01 0.35 -0.01 16 2 C 0.10 0.68 6.59 -82.51 -0.54 0.14 16 3 C -0.24 -1.45 11.24 28.82 0.32 -1.12 16 4 S 0.00 -0.04 22.97 -107.50 -2.47 -2.51 16 5 C 0.48 5.87 8.27 53.82 0.45 6.31 16 6 O -0.46 -7.54 17.55 5.07 0.09 -7.45 16 7 N -0.53 -5.09 2.60 -117.28 -0.31 -5.39 16 8 C 0.12 1.16 4.56 -4.04 -0.02 1.14 16 9 C -0.16 -1.52 4.58 -27.88 -0.13 -1.65 16 10 C 0.52 7.00 7.67 -10.98 -0.08 6.92 16 11 O -0.54 -9.22 15.56 5.55 0.09 -9.14 16 12 N -0.61 -7.88 2.87 -181.58 -0.52 -8.40 16 13 C 0.08 0.70 10.25 59.85 0.61 1.31 16 14 C 0.12 1.69 5.40 -4.05 -0.02 1.67 16 15 C -0.15 -2.91 5.86 -26.73 -0.16 -3.06 16 16 C 0.16 3.29 5.71 -4.04 -0.02 3.27 16 17 N -0.60 -15.84 2.93 -181.12 -0.53 -16.37 16 18 C 0.16 4.33 9.01 59.85 0.54 4.87 16 19 C -0.25 -7.09 9.67 -15.06 -0.15 -7.24 16 20 H 0.07 1.83 7.84 -52.48 -0.41 1.42 16 21 C 0.00 -0.03 5.13 -17.43 -0.09 -0.12 16 22 N -0.91 -27.44 10.59 55.49 0.59 -26.86 16 23 Si 0.90 22.29 29.57 -169.99 -5.03 17.27 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.15 8.10 -51.93 -0.42 -0.27 16 29 H 0.08 0.31 6.18 -51.93 -0.32 -0.01 16 30 H 0.19 0.54 8.06 -52.48 -0.42 0.12 16 31 H 0.11 1.37 7.76 -51.93 -0.40 0.96 16 32 H 0.10 0.88 6.07 -51.93 -0.32 0.56 16 33 H 0.10 0.66 8.11 -51.93 -0.42 0.24 16 34 H 0.10 1.06 7.39 -51.93 -0.38 0.68 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.77 8.07 -51.93 -0.42 0.36 16 37 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 38 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.08 1.21 7.43 -51.93 -0.39 0.83 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 43 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 44 H 0.03 0.77 7.42 -51.93 -0.39 0.38 16 45 H 0.04 1.23 7.19 -51.93 -0.37 0.86 16 46 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 47 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -36.10 398.35 -8.50 -44.60 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -7.47 Total: -4.19 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 1.06 Total: 12.43 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.77 Total: -57.02 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.18 Total: -16.58 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.47 Total: -2.51 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.10 -8.50 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724849966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.027 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds